RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 LINC00483Q53H64 154 aa13.83□□□□□ -0.2
CPSF4-204ENST00000436336 BIRC6Q9NR09 4857 aa13.82□□□□□ -0.2
CPSF4-204ENST00000436336 NDUFV3P56181 108 aaKnown RBP13.8□□□□□ -0.2
CPSF4-204ENST00000436336 SMIM29Q86T20 159 aa13.8□□□□□ -0.2
CPSF4-204ENST00000436336 LAMTOR3Q9UHA4 124 aa13.8□□□□□ -0.2
CPSF4-204ENST00000436336 KRTAP17-1Q9BYP8 105 aa13.79□□□□□ -0.2
CPSF4-204ENST00000436336 C3orf22Q8N5N4 141 aa13.78□□□□□ -0.2
CPSF4-204ENST00000436336 PKHD1L1Q86WI1 4243 aa13.75□□□□□ -0.21
CPSF4-204ENST00000436336 TEN1Q86WV5 123 aa13.74□□□□□ -0.21
CPSF4-204ENST00000436336 ANAPC11Q9NYG5 84 aa13.74□□□□□ -0.21
CPSF4-204ENST00000436336 JMJD7-PLA2G4BH0Y9G9 81 aa13.73□□□□□ -0.21
CPSF4-204ENST00000436336 KRTAP1-4P0C5Y4 121 aa13.73□□□□□ -0.21
CPSF4-204ENST00000436336 ETDBQ3ZM63 59 aa13.73□□□□□ -0.21
CPSF4-204ENST00000436336 F8WEM9 126 aa13.73□□□□□ -0.21
CPSF4-204ENST00000436336 FAM229BQ4G0N7 80 aa13.71□□□□□ -0.21
CPSF4-204ENST00000436336 OBSCN-AS1Q96MR7 158 aa13.71□□□□□ -0.21
CPSF4-204ENST00000436336 A0A1B0GV72 72 aa13.7□□□□□ -0.22
CPSF4-204ENST00000436336 RBM3P98179 157 aaKnown RBP13.69□□□□□ -0.22
CPSF4-204ENST00000436336 IGLV9-49A0A0B4J1Y8 123 aa13.67□□□□□ -0.22
CPSF4-204ENST00000436336 IGLV8-61A0A075B6I0 122 aa13.66□□□□□ -0.22
CPSF4-204ENST00000436336 CRYGAP11844 174 aa13.64□□□□□ -0.23
CPSF4-204ENST00000436336 A0A087X002 238 aa13.64□□□□□ -0.23
CPSF4-204ENST00000436336 C9orf153Q5TBE3 101 aa13.64□□□□□ -0.23
CPSF4-204ENST00000436336 DSCR8Q96T75 97 aa13.63□□□□□ -0.23
CPSF4-204ENST00000436336 C14orf132Q9NPU4 83 aa13.63□□□□□ -0.23
CPSF4-204ENST00000436336 TRBV7-4A0A0J9YYF1 115 aa13.61□□□□□ -0.23
CPSF4-204ENST00000436336 Q8NBF4 154 aa13.61□□□□□ -0.23
CPSF4-204ENST00000436336 MOBPQ13875 183 aa13.61□□□□□ -0.23
CPSF4-204ENST00000436336 Q6JHZ5 121 aa13.6□□□□□ -0.23
CPSF4-204ENST00000436336 KRTAP13-2Q52LG2 175 aa13.59□□□□□ -0.23
CPSF4-204ENST00000436336 LOC110117498A0A087WWA1 95 aa13.59□□□□□ -0.23
CPSF4-204ENST00000436336 PDE6GP18545 87 aa13.57□□□□□ -0.24
CPSF4-204ENST00000436336 IGFL1Q6UW32 110 aa13.57□□□□□ -0.24
CPSF4-204ENST00000436336 HERC2O95714 4834 aa13.57□□□□□ -0.24
CPSF4-204ENST00000436336 SSBP3-AS1Q7Z2R9 100 aa13.56□□□□□ -0.24
CPSF4-204ENST00000436336 Q6ZQT0 140 aa13.55□□□□□ -0.24
CPSF4-204ENST00000436336 PRR26Q8N8Z3 221 aa13.54□□□□□ -0.24
CPSF4-204ENST00000436336 KRTAP4-5Q9BYR2 181 aa13.53□□□□□ -0.24
CPSF4-204ENST00000436336 C21orf62-AS1Q17RA5 79 aa13.53□□□□□ -0.24
CPSF4-204ENST00000436336 TYMSOSQ8TAI1 123 aa13.52□□□□□ -0.25
CPSF4-204ENST00000436336 A0A0G2JQZ4 141 aa13.51□□□□□ -0.25
CPSF4-204ENST00000436336 CCKP06307 115 aa13.5□□□□□ -0.25
CPSF4-204ENST00000436336 A0A1W2PNM2 257 aa13.47□□□□□ -0.25
CPSF4-204ENST00000436336 VPS25Q9BRG1 176 aa13.47□□□□□ -0.25
CPSF4-204ENST00000436336 Q6Q795 121 aa13.44□□□□□ -0.26
CPSF4-204ENST00000436336 FAT3Q8TDW7 4589 aa13.44□□□□□ -0.26
CPSF4-204ENST00000436336 J3QR89 54 aa13.42□□□□□ -0.26
CPSF4-204ENST00000436336 LRP1Q07954 4544 aaKnown RBP13.42□□□□□ -0.26
CPSF4-204ENST00000436336 CD164Q04900 197 aa13.42□□□□□ -0.26
CPSF4-204ENST00000436336 A0A1B0GW54 56 aa13.4□□□□□ -0.26
CPSF4-204ENST00000436336 FLG2Q5D862 2391 aaPredicted RBP13.4□□□□□ -0.26
CPSF4-204ENST00000436336 KRTAP10-8P60410 259 aa13.39□□□□□ -0.27
CPSF4-204ENST00000436336 HRCT1Q6UXD1 115 aa13.39□□□□□ -0.27
CPSF4-204ENST00000436336 OXTP01178 125 aa13.37□□□□□ -0.27
CPSF4-204ENST00000436336 TRBV7-7A0A0K0K1E9 115 aa13.36□□□□□ -0.27
CPSF4-204ENST00000436336 LINC00304Q8N9R0 145 aa13.36□□□□□ -0.27
CPSF4-204ENST00000436336 C4orf48Q5BLP8 95 aa13.36□□□□□ -0.27
CPSF4-204ENST00000436336 FAM240AA0A1B0GVK7 77 aa13.35□□□□□ -0.27
CPSF4-204ENST00000436336 K7ERU9 68 aa13.35□□□□□ -0.27
CPSF4-204ENST00000436336 ACYP1P07311 99 aa13.35□□□□□ -0.27
CPSF4-204ENST00000436336 ABCA13Q86UQ4 5058 aa13.35□□□□□ -0.27
CPSF4-204ENST00000436336 SPAG11AQ6PDA7 123 aa13.33□□□□□ -0.27
CPSF4-204ENST00000436336 A0A087WSZ3 146 aa13.33□□□□□ -0.28
CPSF4-204ENST00000436336 TNXBP22105 4242 aa13.32□□□□□ -0.28
CPSF4-204ENST00000436336 MYCBP2O75592 4640 aa13.31□□□□□ -0.28
CPSF4-204ENST00000436336 SPINK1P00995 79 aa13.3□□□□□ -0.28
CPSF4-204ENST00000436336 KRTAP29-1A8MX34 341 aaPredicted RBP13.28□□□□□ -0.28
CPSF4-204ENST00000436336 MT1HL1P0DM35 61 aa13.28□□□□□ -0.28
CPSF4-204ENST00000436336 LINC00846Q9NV44 126 aa13.28□□□□□ -0.28
CPSF4-204ENST00000436336 SS18L2Q9UHA2 77 aa13.27□□□□□ -0.29
CPSF4-204ENST00000436336 RPS29P62273 56 aaKnown RBP13.26□□□□□ -0.29
CPSF4-204ENST00000436336 LIMD2Q9BT23 127 aa13.25□□□□□ -0.29
CPSF4-204ENST00000436336 Q5XG85 94 aa13.24□□□□□ -0.29
CPSF4-204ENST00000436336 UBL5Q9BZL1 73 aa13.22□□□□□ -0.29
CPSF4-204ENST00000436336 NREPQ16612 68 aa13.21□□□□□ -0.3
CPSF4-204ENST00000436336 Q6ZVQ6 151 aa13.19□□□□□ -0.3
CPSF4-204ENST00000436336 ASB16-AS1Q495Z4 193 aa13.18□□□□□ -0.3
CPSF4-204ENST00000436336 LINC00472Q9H8W2 130 aa13.13□□□□□ -0.31
CPSF4-204ENST00000436336 CDIP1Q9H305 208 aa13.12□□□□□ -0.31
CPSF4-204ENST00000436336 Q96NJ1 140 aa13.11□□□□□ -0.31
CPSF4-204ENST00000436336 J3QL48 77 aa13.1□□□□□ -0.31
CPSF4-204ENST00000436336 LINC00643Q86TS7 51 aa13.08□□□□□ -0.32
CPSF4-204ENST00000436336 C1orf195Q5TG92 126 aa13.07□□□□□ -0.32
CPSF4-204ENST00000436336 DMBT1Q9UGM3 2413 aaPredicted RBP13.07□□□□□ -0.32
CPSF4-204ENST00000436336 DEFB116Q30KQ4 102 aa13.06□□□□□ -0.32
CPSF4-204ENST00000436336 BPY2O14599 106 aa13.05□□□□□ -0.32
CPSF4-204ENST00000436336 SIGMAR1Q99720 223 aa13.05□□□□□ -0.32
CPSF4-204ENST00000436336 J3KT08 172 aa13.04□□□□□ -0.32
CPSF4-204ENST00000436336 IGKV4-1P06312 121 aa13.02□□□□□ -0.32
CPSF4-204ENST00000436336 ATP5EP2Q5VTU8 51 aa13.02□□□□□ -0.33
CPSF4-204ENST00000436336 CXCL6P80162 114 aa13.01□□□□□ -0.33
CPSF4-204ENST00000436336 PCLOQ9Y6V0 5065 aa13□□□□□ -0.33
CPSF4-204ENST00000436336 IGKV3D-7A0A0C4DH55 119 aa12.97□□□□□ -0.33
CPSF4-204ENST00000436336 DSCR10P59022 87 aa12.97□□□□□ -0.33
CPSF4-204ENST00000436336 RETNLBQ9BQ08 111 aa12.97□□□□□ -0.33
CPSF4-204ENST00000436336 A8MWP4 228 aa12.93□□□□□ -0.34
CPSF4-204ENST00000436336 NDUFB1O75438 58 aa12.91□□□□□ -0.34
CPSF4-204ENST00000436336 K7EQZ3 153 aa12.89□□□□□ -0.35
CPSF4-204ENST00000436336 FP248Q71RG6 208 aaPredicted RBP12.89□□□□□ -0.35
CPSF4-204ENST00000436336 MT-ATP8P03928 68 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms