RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 CENPEQ02224 2701 aa3.64□□□□□ -1.83
HERC4-206ENST00000427635 DMAC1Q96GE9 116 aa3.63□□□□□ -1.83
HERC4-206ENST00000427635 LITAFQ99732 161 aa3.63□□□□□ -1.83
HERC4-206ENST00000427635 R4GN34 69 aa3.63□□□□□ -1.83
HERC4-206ENST00000427635 COL6A5A8TX70 2615 aa3.63□□□□□ -1.83
HERC4-206ENST00000427635 KRTAP23-1A1A580 65 aa3.62□□□□□ -1.83
HERC4-206ENST00000427635 A0A096LNT2 108 aa3.62□□□□□ -1.83
HERC4-206ENST00000427635 KLK9Q2XQG4 91 aa3.62□□□□□ -1.83
HERC4-206ENST00000427635 A0A0G2JQZ4 141 aa3.61□□□□□ -1.83
HERC4-206ENST00000427635 ZCCHC13Q8WW36 166 aaKnown RBP3.61□□□□□ -1.83
HERC4-206ENST00000427635 ROMO1P60602 79 aa3.61□□□□□ -1.83
HERC4-206ENST00000427635 A0A1B0GU33 70 aa3.6□□□□□ -1.83
HERC4-206ENST00000427635 A0A087X002 238 aa3.6□□□□□ -1.83
HERC4-206ENST00000427635 PLAC8Q9NZF1 115 aa3.6□□□□□ -1.83
HERC4-206ENST00000427635 REV3LO60673 3130 aa3.59□□□□□ -1.83
HERC4-206ENST00000427635 KRTAP21-3Q3LHN1 58 aa3.59□□□□□ -1.83
HERC4-206ENST00000427635 GIG44P09565 113 aaPredicted RBP3.59□□□□□ -1.83
HERC4-206ENST00000427635 KRTAP1-3Q8IUG1 177 aa3.59□□□□□ -1.83
HERC4-206ENST00000427635 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.59□□□□□ -1.84
HERC4-206ENST00000427635 PCSK5Q92824 1860 aa3.58□□□□□ -1.84
HERC4-206ENST00000427635 SPANXA2-OT1Q8N9U9 137 aa3.58□□□□□ -1.84
HERC4-206ENST00000427635 RANBP2P49792 3224 aaKnown RBP3.58□□□□□ -1.84
HERC4-206ENST00000427635 FLNCQ14315 2725 aa3.57□□□□□ -1.84
HERC4-206ENST00000427635 KRTAP1-1Q07627 177 aa3.57□□□□□ -1.84
HERC4-206ENST00000427635 FLNAP21333 2647 aaKnown RBP3.56□□□□□ -1.84
HERC4-206ENST00000427635 H1FX-AS1Q4G0G2 97 aa3.56□□□□□ -1.84
HERC4-206ENST00000427635 NDUFAF8A1L188 74 aa3.56□□□□□ -1.84
HERC4-206ENST00000427635 M0QZ58 72 aa3.54□□□□□ -1.84
HERC4-206ENST00000427635 TEX15Q9BXT5 2789 aa3.53□□□□□ -1.84
HERC4-206ENST00000427635 ZNF292O60281 2723 aa3.53□□□□□ -1.84
HERC4-206ENST00000427635 A0A1W2PNM2 257 aa3.52□□□□□ -1.85
HERC4-206ENST00000427635 SPINK7P58062 85 aa3.52□□□□□ -1.85
HERC4-206ENST00000427635 IGSF10Q6WRI0 2623 aa3.51□□□□□ -1.85
HERC4-206ENST00000427635 Q8N9P0 234 aaPredicted RBP3.51□□□□□ -1.85
HERC4-206ENST00000427635 C20orf166-AS1Q96NR2 134 aa3.5□□□□□ -1.85
HERC4-206ENST00000427635 KRTAP10-1P60331 282 aa3.5□□□□□ -1.85
HERC4-206ENST00000427635 DSPP15924 2871 aaKnown RBP3.49□□□□□ -1.85
HERC4-206ENST00000427635 LINC01558Q9Y6Z2 57 aa3.49□□□□□ -1.85
HERC4-206ENST00000427635 UBR5O95071 2799 aaPredicted RBP3.48□□□□□ -1.85
HERC4-206ENST00000427635 A8MUU9 505 aa3.47□□□□□ -1.85
HERC4-206ENST00000427635 LAMA3Q16787 3333 aa3.47□□□□□ -1.85
HERC4-206ENST00000427635 KRTAP25-1Q3LHN0 102 aa3.47□□□□□ -1.85
HERC4-206ENST00000427635 Q8NDZ9 215 aa3.47□□□□□ -1.85
HERC4-206ENST00000427635 PRUNE2Q8WUY3 3088 aa3.46□□□□□ -1.86
HERC4-206ENST00000427635 Q5W150 140 aa3.46□□□□□ -1.86
HERC4-206ENST00000427635 DMBT1Q9UGM3 2413 aaPredicted RBP3.45□□□□□ -1.86
HERC4-206ENST00000427635 KRTAP10-2P60368 255 aa3.45□□□□□ -1.86
HERC4-206ENST00000427635 TENM4Q6N022 2769 aa3.45□□□□□ -1.86
HERC4-206ENST00000427635 MKI67P46013 3256 aaKnown RBP3.44□□□□□ -1.86
HERC4-206ENST00000427635 A8MU10 97 aa3.44□□□□□ -1.86
HERC4-206ENST00000427635 PRRC2CQ9Y520 2896 aaKnown RBP3.44□□□□□ -1.86
HERC4-206ENST00000427635 RPL37P61927 97 aaKnown RBP3.43□□□□□ -1.86
HERC4-206ENST00000427635 STAB2Q8WWQ8 2551 aa3.43□□□□□ -1.86
HERC4-206ENST00000427635 Q6ZR54 194 aa3.43□□□□□ -1.86
HERC4-206ENST00000427635 MMP24-AS1A0A0U1RRL7 71 aa3.42□□□□□ -1.86
HERC4-206ENST00000427635 CFAP54Q96N23 3096 aa3.42□□□□□ -1.86
HERC4-206ENST00000427635 DNAH12Q6ZR08 3092 aa3.41□□□□□ -1.86
HERC4-206ENST00000427635 BPTFQ12830 3046 aa3.41□□□□□ -1.86
HERC4-206ENST00000427635 SPRR1BP22528 89 aa3.4□□□□□ -1.86
HERC4-206ENST00000427635 UTP20O75691 2785 aaKnown RBP3.4□□□□□ -1.86
HERC4-206ENST00000427635 KRTAP4-16G5E9R7 235 aaPredicted RBP3.4□□□□□ -1.87
HERC4-206ENST00000427635 BRCA2P51587 3418 aa3.38□□□□□ -1.87
HERC4-206ENST00000427635 SZT2Q5T011 3432 aa3.38□□□□□ -1.87
HERC4-206ENST00000427635 COL6A3P12111 3177 aa3.37□□□□□ -1.87
HERC4-206ENST00000427635 SPRR1AP35321 89 aa3.37□□□□□ -1.87
HERC4-206ENST00000427635 TRIOO75962 3097 aa3.36□□□□□ -1.87
HERC4-206ENST00000427635 TNRC18O15417 2968 aaPredicted RBP3.36□□□□□ -1.87
HERC4-206ENST00000427635 RPS29P62273 56 aaKnown RBP3.36□□□□□ -1.87
HERC4-206ENST00000427635 CHD7Q9P2D1 2997 aa3.35□□□□□ -1.87
HERC4-206ENST00000427635 KRTAP1-5Q9BYS1 174 aa3.34□□□□□ -1.87
HERC4-206ENST00000427635 CRYBG3Q68DQ2 2970 aa3.34□□□□□ -1.87
HERC4-206ENST00000427635 MGAQ8IWI9 3026 aa3.34□□□□□ -1.87
HERC4-206ENST00000427635 C5orf42Q9H799 3197 aa3.34□□□□□ -1.87
HERC4-206ENST00000427635 LINC00472Q9H8W2 130 aa3.34□□□□□ -1.87
HERC4-206ENST00000427635 PANO1I0J062 215 aa3.34□□□□□ -1.88
HERC4-206ENST00000427635 HIVEP1P15822 2718 aa3.33□□□□□ -1.88
HERC4-206ENST00000427635 KRTAP26-1Q6PEX3 210 aa3.33□□□□□ -1.88
HERC4-206ENST00000427635 CR1P17927 2039 aa3.33□□□□□ -1.88
HERC4-206ENST00000427635 AKAP13Q12802 2813 aa3.32□□□□□ -1.88
HERC4-206ENST00000427635 ITPR2Q14571 2701 aa3.32□□□□□ -1.88
HERC4-206ENST00000427635 LAMA2P24043 3122 aaKnown RBP3.32□□□□□ -1.88
HERC4-206ENST00000427635 HTTP42858 3142 aa3.32□□□□□ -1.88
HERC4-206ENST00000427635 WDFY4Q6ZS81 3184 aa3.32□□□□□ -1.88
HERC4-206ENST00000427635 SPTBN5Q9NRC6 3674 aaKnown RBP3.31□□□□□ -1.88
HERC4-206ENST00000427635 TNP1P09430 55 aa3.31□□□□□ -1.88
HERC4-206ENST00000427635 KRTAP3-3Q9BYR6 98 aa3.31□□□□□ -1.88
HERC4-206ENST00000427635 KRTAP3-2Q9BYR7 98 aa3.31□□□□□ -1.88
HERC4-206ENST00000427635 ASH1LQ9NR48 2969 aaKnown RBP3.3□□□□□ -1.88
HERC4-206ENST00000427635 FLG2Q5D862 2391 aaPredicted RBP3.3□□□□□ -1.88
HERC4-206ENST00000427635 SPATA8Q6RVD6 105 aa3.29□□□□□ -1.88
HERC4-206ENST00000427635 NSD1Q96L73 2696 aaPredicted RBP3.29□□□□□ -1.88
HERC4-206ENST00000427635 CHD9Q3L8U1 2897 aa3.29□□□□□ -1.88
HERC4-206ENST00000427635 MUC3AQ02505 3323 aa3.28□□□□□ -1.88
HERC4-206ENST00000427635 FRYQ5TBA9 3013 aa3.28□□□□□ -1.88
HERC4-206ENST00000427635 MAP1AP78559 2803 aaPredicted RBP3.28□□□□□ -1.88
HERC4-206ENST00000427635 FRYLO94915 3013 aa3.27□□□□□ -1.89
HERC4-206ENST00000427635 UNC80Q8N2C7 3258 aa3.27□□□□□ -1.89
HERC4-206ENST00000427635 P0C880 135 aa3.27□□□□□ -1.89
HERC4-206ENST00000427635 PRO2289Q9P1D8 64 aa3.26□□□□□ -1.89
HERC4-206ENST00000427635 KALRNO60229 2985 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms