RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CYSTM1Q9H1C7 97 aa3.61□□□□□ -1.83
SCN1A-203ENST00000409050 POLQO75417 2590 aa3.61□□□□□ -1.83
SCN1A-203ENST00000409050 M0R2T5 61 aa3.6□□□□□ -1.83
SCN1A-203ENST00000409050 PANO1I0J062 215 aa3.6□□□□□ -1.83
SCN1A-203ENST00000409050 PLAC4Q8WY50 150 aa3.59□□□□□ -1.83
SCN1A-203ENST00000409050 A6NN06 94 aa3.58□□□□□ -1.84
SCN1A-203ENST00000409050 KRTAP16-1A8MUX0 517 aa3.58□□□□□ -1.84
SCN1A-203ENST00000409050 KRTAP25-1Q3LHN0 102 aa3.57□□□□□ -1.84
SCN1A-203ENST00000409050 FLNBO75369 2602 aaKnown RBP3.57□□□□□ -1.84
SCN1A-203ENST00000409050 EPG5Q9HCE0 2579 aa3.56□□□□□ -1.84
SCN1A-203ENST00000409050 Q5VSD8 79 aa3.54□□□□□ -1.84
SCN1A-203ENST00000409050 PP632Q6XCG6 107 aa3.53□□□□□ -1.84
SCN1A-203ENST00000409050 MGAM2Q2M2H8 2515 aa3.53□□□□□ -1.84
SCN1A-203ENST00000409050 ADM2Q7Z4H4 148 aa3.53□□□□□ -1.84
SCN1A-203ENST00000409050 KRTAP1-5Q9BYS1 174 aa3.52□□□□□ -1.85
SCN1A-203ENST00000409050 NOTCH2NLQ7Z3S9 236 aa3.52□□□□□ -1.85
SCN1A-203ENST00000409050 KRTAP10-1P60331 282 aa3.51□□□□□ -1.85
SCN1A-203ENST00000409050 MAST4O15021 2626 aa3.51□□□□□ -1.85
SCN1A-203ENST00000409050 WDR87Q6ZQQ6 2873 aa3.5□□□□□ -1.85
SCN1A-203ENST00000409050 STAB1Q9NY15 2570 aa3.49□□□□□ -1.85
SCN1A-203ENST00000409050 KRTAP13-1Q8IUC0 172 aa3.49□□□□□ -1.85
SCN1A-203ENST00000409050 SRCAPQ6ZRS2 3230 aa3.49□□□□□ -1.85
SCN1A-203ENST00000409050 UTRNP46939 3433 aa3.48□□□□□ -1.85
SCN1A-203ENST00000409050 USP24Q9UPU5 2620 aa3.48□□□□□ -1.85
SCN1A-203ENST00000409050 ATRQ13535 2644 aa3.46□□□□□ -1.86
SCN1A-203ENST00000409050 A8MUU9 505 aa3.45□□□□□ -1.86
SCN1A-203ENST00000409050 Q6ZRN7 208 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-203ENST00000409050 TNP1P09430 55 aa3.45□□□□□ -1.86
SCN1A-203ENST00000409050 KRTAP10-2P60368 255 aa3.45□□□□□ -1.86
SCN1A-203ENST00000409050 EP400Q96L91 3159 aa3.44□□□□□ -1.86
SCN1A-203ENST00000409050 C20orf166-AS1Q96NR2 134 aa3.44□□□□□ -1.86
SCN1A-203ENST00000409050 HECTD1Q9ULT8 2610 aa3.43□□□□□ -1.86
SCN1A-203ENST00000409050 KRTAP21-3Q3LHN1 58 aa3.43□□□□□ -1.86
SCN1A-203ENST00000409050 FLG2Q5D862 2391 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-203ENST00000409050 KRTAP11-1Q8IUC1 163 aa3.42□□□□□ -1.86
SCN1A-203ENST00000409050 ZFHX3Q15911 3703 aa3.41□□□□□ -1.86
SCN1A-203ENST00000409050 NBEAQ8NFP9 2946 aa3.39□□□□□ -1.87
SCN1A-203ENST00000409050 CENPFP49454 3210 aa3.38□□□□□ -1.87
SCN1A-203ENST00000409050 KRTAP13-2Q52LG2 175 aa3.38□□□□□ -1.87
SCN1A-203ENST00000409050 KRTAP7-1Q8IUC3 87 aa3.37□□□□□ -1.87
SCN1A-203ENST00000409050 CEP350Q5VT06 3117 aa3.37□□□□□ -1.87
SCN1A-203ENST00000409050 PRRC2CQ9Y520 2896 aaKnown RBP3.36□□□□□ -1.87
SCN1A-203ENST00000409050 USP34Q70CQ2 3546 aa3.35□□□□□ -1.87
SCN1A-203ENST00000409050 NDUFAF8A1L188 74 aa3.35□□□□□ -1.87
SCN1A-203ENST00000409050 A8MU10 97 aa3.34□□□□□ -1.87
SCN1A-203ENST00000409050 HELZ2Q9BYK8 2649 aaKnown RBP3.31□□□□□ -1.88
SCN1A-203ENST00000409050 FLNAP21333 2647 aaKnown RBP3.29□□□□□ -1.88
SCN1A-203ENST00000409050 P0C880 135 aa3.29□□□□□ -1.88
SCN1A-203ENST00000409050 ITPR3Q14573 2671 aa3.28□□□□□ -1.88
SCN1A-203ENST00000409050 PCNTO95613 3336 aa3.28□□□□□ -1.88
SCN1A-203ENST00000409050 TPRXLQ17RH7 258 aa3.28□□□□□ -1.89
SCN1A-203ENST00000409050 DMBT1Q9UGM3 2413 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-203ENST00000409050 WDFY3Q8IZQ1 3526 aa3.27□□□□□ -1.89
SCN1A-203ENST00000409050 DNAH12Q6ZR08 3092 aa3.26□□□□□ -1.89
SCN1A-203ENST00000409050 C10orf95Q9H7T3 257 aa3.26□□□□□ -1.89
SCN1A-203ENST00000409050 SETXQ7Z333 2677 aaKnown RBP3.26□□□□□ -1.89
SCN1A-203ENST00000409050 GOLGB1Q14789 3259 aaKnown RBP3.26□□□□□ -1.89
SCN1A-203ENST00000409050 PRO2289Q9P1D8 64 aa3.25□□□□□ -1.89
SCN1A-203ENST00000409050 NBEAL1Q6ZS30 2694 aa3.24□□□□□ -1.89
SCN1A-203ENST00000409050 TRANK1O15050 2925 aa3.24□□□□□ -1.89
SCN1A-203ENST00000409050 KRTAP1-4P0C5Y4 121 aa3.23□□□□□ -1.89
SCN1A-203ENST00000409050 XP32Q5T750 250 aa3.23□□□□□ -1.89
SCN1A-203ENST00000409050 TEP1Q99973 2627 aaKnown RBP3.22□□□□□ -1.89
SCN1A-203ENST00000409050 STAB2Q8WWQ8 2551 aa3.22□□□□□ -1.89
SCN1A-203ENST00000409050 H0YAA0 97 aa3.21□□□□□ -1.89
SCN1A-203ENST00000409050 CFAP46Q8IYW2 2715 aa3.21□□□□□ -1.89
SCN1A-203ENST00000409050 CHD9Q3L8U1 2897 aa3.21□□□□□ -1.9
SCN1A-203ENST00000409050 TNRC18O15417 2968 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-203ENST00000409050 KMT2BQ9UMN6 2715 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-203ENST00000409050 NOTCH1P46531 2555 aa3.18□□□□□ -1.9
SCN1A-203ENST00000409050 UNC79Q9P2D8 2635 aa3.17□□□□□ -1.9
SCN1A-203ENST00000409050 CHD7Q9P2D1 2997 aa3.17□□□□□ -1.9
SCN1A-203ENST00000409050 DSPP15924 2871 aaKnown RBP3.17□□□□□ -1.9
SCN1A-203ENST00000409050 FRYQ5TBA9 3013 aa3.17□□□□□ -1.9
SCN1A-203ENST00000409050 CENPEQ02224 2701 aa3.16□□□□□ -1.9
SCN1A-203ENST00000409050 COL6A5A8TX70 2615 aa3.16□□□□□ -1.9
SCN1A-203ENST00000409050 KRTAP10-8P60410 259 aa3.16□□□□□ -1.9
SCN1A-203ENST00000409050 CFAP54Q96N23 3096 aa3.15□□□□□ -1.91
SCN1A-203ENST00000409050 KRTAP13-3Q3SY46 172 aa3.14□□□□□ -1.91
SCN1A-203ENST00000409050 BAHCC1Q9P281 2608 aa3.14□□□□□ -1.91
SCN1A-203ENST00000409050 MUC3AQ02505 3323 aa3.14□□□□□ -1.91
SCN1A-203ENST00000409050 RANBP2P49792 3224 aaKnown RBP3.14□□□□□ -1.91
SCN1A-203ENST00000409050 ITPR1Q14643 2758 aa3.13□□□□□ -1.91
SCN1A-203ENST00000409050 TEX15Q9BXT5 2789 aa3.12□□□□□ -1.91
SCN1A-203ENST00000409050 HTTP42858 3142 aa3.12□□□□□ -1.91
SCN1A-203ENST00000409050 LAMA2P24043 3122 aaKnown RBP3.12□□□□□ -1.91
SCN1A-203ENST00000409050 MGAQ8IWI9 3026 aa3.11□□□□□ -1.91
SCN1A-203ENST00000409050 CDH23Q9H251 3354 aa3.1□□□□□ -1.91
SCN1A-203ENST00000409050 KRTAP13-4Q3LI77 160 aa3.1□□□□□ -1.91
SCN1A-203ENST00000409050 EYSQ5T1H1 3165 aa3.09□□□□□ -1.91
SCN1A-203ENST00000409050 AKAP13Q12802 2813 aa3.09□□□□□ -1.91
SCN1A-203ENST00000409050 NSD1Q96L73 2696 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-203ENST00000409050 MAP1AP78559 2803 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-203ENST00000409050 BRCA2P51587 3418 aa3.08□□□□□ -1.92
SCN1A-203ENST00000409050 LAMA3Q16787 3333 aa3.07□□□□□ -1.92
SCN1A-203ENST00000409050 IGSF10Q6WRI0 2623 aa3.07□□□□□ -1.92
SCN1A-203ENST00000409050 TACC2O95359 2948 aa3.06□□□□□ -1.92
SCN1A-203ENST00000409050 KRTAP10-10P60014 251 aa3.06□□□□□ -1.92
SCN1A-203ENST00000409050 CHD6Q8TD26 2715 aa3.05□□□□□ -1.92
SCN1A-203ENST00000409050 C5orf42Q9H799 3197 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms