RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 LST1O00453 97 aa7.27□□□□□ -1.25
PTCH1-202ENST00000375271 FAM236CP0DP71 79 aa7.27□□□□□ -1.25
PTCH1-202ENST00000375271 LINC01545Q5VT33 79 aa7.27□□□□□ -1.25
PTCH1-202ENST00000375271 SMIM11BQ8TCY0 68 aa7.26□□□□□ -1.25
PTCH1-202ENST00000375271 IGFL1Q6UW32 110 aa7.25□□□□□ -1.25
PTCH1-202ENST00000375271 Q6ZQY7 126 aa7.25□□□□□ -1.25
PTCH1-202ENST00000375271 MUSTN1Q8IVN3 82 aa7.25□□□□□ -1.25
PTCH1-202ENST00000375271 USH2AO75445 5202 aa7.24□□□□□ -1.25
PTCH1-202ENST00000375271 hADV29S1A0JD25 119 aa7.24□□□□□ -1.25
PTCH1-202ENST00000375271 SSPOA2VEC9 5147 aa7.24□□□□□ -1.25
PTCH1-202ENST00000375271 KRTAP9-8Q9BYQ0 159 aa7.23□□□□□ -1.25
PTCH1-202ENST00000375271 SS18L2Q9UHA2 77 aa7.23□□□□□ -1.25
PTCH1-202ENST00000375271 OCIAD2Q56VL3 154 aa7.22□□□□□ -1.25
PTCH1-202ENST00000375271 SNHG12Q9BXW3 62 aa7.22□□□□□ -1.25
PTCH1-202ENST00000375271 SCGB1D1O95968 90 aa7.21□□□□□ -1.26
PTCH1-202ENST00000375271 KRTDAPP60985 99 aa7.21□□□□□ -1.26
PTCH1-202ENST00000375271 LINC00575Q6W349 94 aa7.21□□□□□ -1.26
PTCH1-202ENST00000375271 LINC00846Q9NV44 126 aa7.19□□□□□ -1.26
PTCH1-202ENST00000375271 C3orf79P0CE67 100 aa7.18□□□□□ -1.26
PTCH1-202ENST00000375271 C20orf166-AS1Q96NR2 134 aa7.18□□□□□ -1.26
PTCH1-202ENST00000375271 COLCA2A8K830 154 aa7.17□□□□□ -1.26
PTCH1-202ENST00000375271 PPDPFLQ8WWR9 84 aa7.17□□□□□ -1.26
PTCH1-202ENST00000375271 RBM12B-AS1Q9P1G2 102 aa7.17□□□□□ -1.26
PTCH1-202ENST00000375271 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.16□□□□□ -1.26
PTCH1-202ENST00000375271 FCGBPQ9Y6R7 5405 aaPredicted RBP7.16□□□□□ -1.26
PTCH1-202ENST00000375271 A8MUU9 505 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 H3BUT2 72 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BKO60814 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BJP06899 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BOP23527 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BBP33778 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BDP58876 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BCP62807 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST2H2BEQ16778 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 ANKRD39Q53RE8 183 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BHQ93079 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BNQ99877 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 HIST1H2BMQ99879 126 aa7.15□□□□□ -1.26
PTCH1-202ENST00000375271 SNCGO76070 127 aa7.14□□□□□ -1.27
PTCH1-202ENST00000375271 KRTAP10-10P60014 251 aa7.14□□□□□ -1.27
PTCH1-202ENST00000375271 KRTAP19-1Q8IUB9 90 aa7.14□□□□□ -1.27
PTCH1-202ENST00000375271 ATOH7Q8N100 152 aa7.14□□□□□ -1.27
PTCH1-202ENST00000375271 MT2AP02795 61 aa7.13□□□□□ -1.27
PTCH1-202ENST00000375271 BVES-AS1Q5T3Y7 98 aa7.13□□□□□ -1.27
PTCH1-202ENST00000375271 C12orf57Q99622 126 aa7.13□□□□□ -1.27
PTCH1-202ENST00000375271 SIGMAR1Q99720 223 aa7.12□□□□□ -1.27
PTCH1-202ENST00000375271 MACF1Q9UPN3 7388 aaKnown RBP7.11□□□□□ -1.27
PTCH1-202ENST00000375271 DSCR10P59022 87 aa7.1□□□□□ -1.27
PTCH1-202ENST00000375271 TEN1Q86WV5 123 aa7.1□□□□□ -1.27
PTCH1-202ENST00000375271 A0A087WSZ3 146 aa7.08□□□□□ -1.28
PTCH1-202ENST00000375271 SNRPEP62304 92 aaKnown RBP7.08□□□□□ -1.28
PTCH1-202ENST00000375271 MT1FP04733 61 aa7.07□□□□□ -1.28
PTCH1-202ENST00000375271 MTURNQ8N3F0 131 aa7.07□□□□□ -1.28
PTCH1-202ENST00000375271 SYNE2Q8WXH0 6885 aaKnown RBP7.06□□□□□ -1.28
PTCH1-202ENST00000375271 HSBP1L1C9JCN9 74 aa7.06□□□□□ -1.28
PTCH1-202ENST00000375271 GHRHP01286 108 aa7.06□□□□□ -1.28
PTCH1-202ENST00000375271 LINC00313P59037 77 aa7.05□□□□□ -1.28
PTCH1-202ENST00000375271 S100A1P23297 94 aa7.03□□□□□ -1.28
PTCH1-202ENST00000375271 NDUFV3P56181 108 aaKnown RBP7.02□□□□□ -1.29
PTCH1-202ENST00000375271 HIST1H4GQ99525 98 aa7.01□□□□□ -1.29
PTCH1-202ENST00000375271 KRTAP9-3Q9BYQ3 159 aa7.01□□□□□ -1.29
PTCH1-202ENST00000375271 H3BMG7 143 aa7□□□□□ -1.29
PTCH1-202ENST00000375271 IGKV4-1P06312 121 aa7□□□□□ -1.29
PTCH1-202ENST00000375271 FABP2P12104 132 aa6.99□□□□□ -1.29
PTCH1-202ENST00000375271 COA6Q5JTJ3 125 aaKnown RBP6.99□□□□□ -1.29
PTCH1-202ENST00000375271 RAB37Q96AX2 223 aa6.98□□□□□ -1.29
PTCH1-202ENST00000375271 H0YGX0 51 aa6.97□□□□□ -1.29
PTCH1-202ENST00000375271 HRES1P13985 223 aa6.97□□□□□ -1.29
PTCH1-202ENST00000375271 KRTAP16-1A8MUX0 517 aa6.94□□□□□ -1.3
PTCH1-202ENST00000375271 MPLKIPQ8TAP9 179 aa6.94□□□□□ -1.3
PTCH1-202ENST00000375271 IGHV6-1A0A0B4J1U7 121 aa6.93□□□□□ -1.3
PTCH1-202ENST00000375271 S100A2P29034 98 aa6.93□□□□□ -1.3
PTCH1-202ENST00000375271 KRTAP19-6Q3LI70 58 aa6.91□□□□□ -1.3
PTCH1-202ENST00000375271 ANKRD29Q8N6D5 301 aa6.91□□□□□ -1.3
PTCH1-202ENST00000375271 A8MWP4 228 aa6.9□□□□□ -1.3
PTCH1-202ENST00000375271 NOTCH2NLQ7Z3S9 236 aa6.9□□□□□ -1.3
PTCH1-202ENST00000375271 A0A1B0GV72 72 aa6.89□□□□□ -1.31
PTCH1-202ENST00000375271 A0A1W2PNM2 257 aa6.89□□□□□ -1.31
PTCH1-202ENST00000375271 TRBV7-4A0A0J9YYF1 115 aa6.88□□□□□ -1.31
PTCH1-202ENST00000375271 A0A1B0GX51 115 aa6.88□□□□□ -1.31
PTCH1-202ENST00000375271 DNAL4O96015 105 aa6.88□□□□□ -1.31
PTCH1-202ENST00000375271 DEFB116Q30KQ4 102 aa6.88□□□□□ -1.31
PTCH1-202ENST00000375271 TRACP01848 142 aa6.87□□□□□ -1.31
PTCH1-202ENST00000375271 FAM218AQ96MZ4 157 aa6.87□□□□□ -1.31
PTCH1-202ENST00000375271 C8orf87E5RJ46 101 aa6.86□□□□□ -1.31
PTCH1-202ENST00000375271 A0A0B4J2C4 111 aa6.84□□□□□ -1.31
PTCH1-202ENST00000375271 SPINK7P58062 85 aa6.84□□□□□ -1.31
PTCH1-202ENST00000375271 LYRM7Q5U5X0 104 aa6.84□□□□□ -1.31
PTCH1-202ENST00000375271 H3BQ85 93 aa6.83□□□□□ -1.32
PTCH1-202ENST00000375271 CCKP06307 115 aa6.83□□□□□ -1.32
PTCH1-202ENST00000375271 ZCCHC13Q8WW36 166 aaKnown RBP6.83□□□□□ -1.32
PTCH1-202ENST00000375271 COX8AP10176 69 aa6.82□□□□□ -1.32
PTCH1-202ENST00000375271 KRTAP6-3Q3LI67 103 aa6.82□□□□□ -1.32
PTCH1-202ENST00000375271 Q8N9P0 234 aaPredicted RBP6.82□□□□□ -1.32
PTCH1-202ENST00000375271 HIST1H2BLQ99880 126 aa6.82□□□□□ -1.32
PTCH1-202ENST00000375271 ORMDL1Q9P0S3 153 aa6.82□□□□□ -1.32
PTCH1-202ENST00000375271 LOC105371267A0A1B0GV96 52 aa6.81□□□□□ -1.32
PTCH1-202ENST00000375271 A0A1B0GVX0 72 aa6.81□□□□□ -1.32
PTCH1-202ENST00000375271 VPS25Q9BRG1 176 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms