RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 A0A096LNT2 108 aa5.7□□□□□ -1.5
VPS13A-203ENST00000360280 CYSTM1Q9H1C7 97 aa5.7□□□□□ -1.5
VPS13A-203ENST00000360280 AKAP13Q12802 2813 aa5.7□□□□□ -1.5
VPS13A-203ENST00000360280 KMT2BQ9UMN6 2715 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-203ENST00000360280 PLAC8Q9NZF1 115 aa5.69□□□□□ -1.5
VPS13A-203ENST00000360280 ATRQ13535 2644 aa5.69□□□□□ -1.5
VPS13A-203ENST00000360280 SEC61BP60468 96 aaKnown RBP5.68□□□□□ -1.5
VPS13A-203ENST00000360280 PLAC4Q8WY50 150 aa5.67□□□□□ -1.5
VPS13A-203ENST00000360280 SPRR1AP35321 89 aa5.66□□□□□ -1.5
VPS13A-203ENST00000360280 KRTAP10-3P60369 221 aa5.66□□□□□ -1.5
VPS13A-203ENST00000360280 ITPR3Q14573 2671 aa5.66□□□□□ -1.5
VPS13A-203ENST00000360280 SPRR1BP22528 89 aa5.64□□□□□ -1.51
VPS13A-203ENST00000360280 GCN1Q92616 2671 aaKnown RBP5.63□□□□□ -1.51
VPS13A-203ENST00000360280 Q6ZR54 194 aa5.63□□□□□ -1.51
VPS13A-203ENST00000360280 STAB1Q9NY15 2570 aa5.6□□□□□ -1.51
VPS13A-203ENST00000360280 KRTAP25-1Q3LHN0 102 aa5.6□□□□□ -1.51
VPS13A-203ENST00000360280 ADM2Q7Z4H4 148 aa5.6□□□□□ -1.51
VPS13A-203ENST00000360280 SPATA8Q6RVD6 105 aa5.6□□□□□ -1.51
VPS13A-203ENST00000360280 OXTP01178 125 aa5.59□□□□□ -1.51
VPS13A-203ENST00000360280 KRTAP26-1Q6PEX3 210 aa5.59□□□□□ -1.51
VPS13A-203ENST00000360280 PANO1I0J062 215 aa5.59□□□□□ -1.52
VPS13A-203ENST00000360280 Q8NDZ9 215 aa5.57□□□□□ -1.52
VPS13A-203ENST00000360280 C20orf166-AS1Q96NR2 134 aa5.56□□□□□ -1.52
VPS13A-203ENST00000360280 UTRNP46939 3433 aa5.54□□□□□ -1.52
VPS13A-203ENST00000360280 A6NN06 94 aa5.53□□□□□ -1.52
VPS13A-203ENST00000360280 NOTCH1P46531 2555 aa5.53□□□□□ -1.52
VPS13A-203ENST00000360280 HELZ2Q9BYK8 2649 aaKnown RBP5.52□□□□□ -1.53
VPS13A-203ENST00000360280 CHD6Q8TD26 2715 aa5.52□□□□□ -1.53
VPS13A-203ENST00000360280 COL6A5A8TX70 2615 aa5.52□□□□□ -1.53
VPS13A-203ENST00000360280 FLNBO75369 2602 aaKnown RBP5.52□□□□□ -1.53
VPS13A-203ENST00000360280 PCNTO95613 3336 aa5.51□□□□□ -1.53
VPS13A-203ENST00000360280 STAB2Q8WWQ8 2551 aa5.51□□□□□ -1.53
VPS13A-203ENST00000360280 GOLGB1Q14789 3259 aaKnown RBP5.51□□□□□ -1.53
VPS13A-203ENST00000360280 NDUFAF8A1L188 74 aa5.5□□□□□ -1.53
VPS13A-203ENST00000360280 UNC79Q9P2D8 2635 aa5.5□□□□□ -1.53
VPS13A-203ENST00000360280 Q5VSD8 79 aa5.47□□□□□ -1.53
VPS13A-203ENST00000360280 TEX15Q9BXT5 2789 aa5.46□□□□□ -1.53
VPS13A-203ENST00000360280 KRTAP29-1A8MX34 341 aaPredicted RBP5.46□□□□□ -1.54
VPS13A-203ENST00000360280 A0A087X002 238 aa5.45□□□□□ -1.54
VPS13A-203ENST00000360280 KRTAP1-3Q8IUG1 177 aa5.43□□□□□ -1.54
VPS13A-203ENST00000360280 A8MUU9 505 aa5.42□□□□□ -1.54
VPS13A-203ENST00000360280 CEP350Q5VT06 3117 aa5.42□□□□□ -1.54
VPS13A-203ENST00000360280 KRTAP1-1Q07627 177 aa5.42□□□□□ -1.54
VPS13A-203ENST00000360280 RPS29P62273 56 aaKnown RBP5.41□□□□□ -1.54
VPS13A-203ENST00000360280 KRTAP4-16G5E9R7 235 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-203ENST00000360280 ITPR2Q14571 2701 aa5.38□□□□□ -1.55
VPS13A-203ENST00000360280 C10orf95Q9H7T3 257 aa5.38□□□□□ -1.55
VPS13A-203ENST00000360280 TEP1Q99973 2627 aaKnown RBP5.38□□□□□ -1.55
VPS13A-203ENST00000360280 TNP1P09430 55 aa5.37□□□□□ -1.55
VPS13A-203ENST00000360280 C5orf42Q9H799 3197 aa5.36□□□□□ -1.55
VPS13A-203ENST00000360280 KRTAP1-5Q9BYS1 174 aa5.36□□□□□ -1.55
VPS13A-203ENST00000360280 DNAH12Q6ZR08 3092 aa5.35□□□□□ -1.55
VPS13A-203ENST00000360280 APCP25054 2843 aa5.35□□□□□ -1.55
VPS13A-203ENST00000360280 LCE6AA0A183 80 aa5.34□□□□□ -1.55
VPS13A-203ENST00000360280 A8MU10 97 aa5.34□□□□□ -1.55
VPS13A-203ENST00000360280 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
VPS13A-203ENST00000360280 NOTCH2NLQ7Z3S9 236 aa5.31□□□□□ -1.56
VPS13A-203ENST00000360280 SETXQ7Z333 2677 aaKnown RBP5.29□□□□□ -1.56
VPS13A-203ENST00000360280 KRTAP10-1P60331 282 aa5.29□□□□□ -1.56
VPS13A-203ENST00000360280 KRTAP10-2P60368 255 aa5.28□□□□□ -1.56
VPS13A-203ENST00000360280 KRTAP11-1Q8IUC1 163 aa5.28□□□□□ -1.56
VPS13A-203ENST00000360280 ZNF292O60281 2723 aa5.27□□□□□ -1.57
VPS13A-203ENST00000360280 BAHCC1Q9P281 2608 aa5.25□□□□□ -1.57
VPS13A-203ENST00000360280 IGSF10Q6WRI0 2623 aa5.2□□□□□ -1.58
VPS13A-203ENST00000360280 CFAP54Q96N23 3096 aa5.19□□□□□ -1.58
VPS13A-203ENST00000360280 NBEAL2Q6ZNJ1 2754 aa5.18□□□□□ -1.58
VPS13A-203ENST00000360280 MAP1AP78559 2803 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-203ENST00000360280 NSD1Q96L73 2696 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-203ENST00000360280 Q6ZRN7 208 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-203ENST00000360280 XIRP2A4UGR9 3374 aa5.16□□□□□ -1.58
VPS13A-203ENST00000360280 ITPR1Q14643 2758 aa5.15□□□□□ -1.59
VPS13A-203ENST00000360280 UTP20O75691 2785 aaKnown RBP5.12□□□□□ -1.59
VPS13A-203ENST00000360280 A0A0C4DFX4 3053 aa5.12□□□□□ -1.59
VPS13A-203ENST00000360280 P0C880 135 aa5.11□□□□□ -1.59
VPS13A-203ENST00000360280 UBR5O95071 2799 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-203ENST00000360280 KRTAP13-2Q52LG2 175 aa5.09□□□□□ -1.6
VPS13A-203ENST00000360280 KRTAP13-1Q8IUC0 172 aa5.08□□□□□ -1.6
VPS13A-203ENST00000360280 KRTAP10-8P60410 259 aa5.08□□□□□ -1.6
VPS13A-203ENST00000360280 LAMA2P24043 3122 aaKnown RBP5.07□□□□□ -1.6
VPS13A-203ENST00000360280 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
VPS13A-203ENST00000360280 MGAQ8IWI9 3026 aa5.03□□□□□ -1.6
VPS13A-203ENST00000360280 H0YAA0 97 aa5.03□□□□□ -1.6
VPS13A-203ENST00000360280 LRBAP50851 2863 aa4.99□□□□□ -1.61
VPS13A-203ENST00000360280 MKI67P46013 3256 aaKnown RBP4.98□□□□□ -1.61
VPS13A-203ENST00000360280 KRTAP7-1Q8IUC3 87 aa4.98□□□□□ -1.61
VPS13A-203ENST00000360280 FRYQ5TBA9 3013 aa4.96□□□□□ -1.62
VPS13A-203ENST00000360280 TRANK1O15050 2925 aa4.95□□□□□ -1.62
VPS13A-203ENST00000360280 VPS13AQ96RL7 3174 aa4.94□□□□□ -1.62
VPS13A-203ENST00000360280 USP34Q70CQ2 3546 aa4.93□□□□□ -1.62
VPS13A-203ENST00000360280 WDFY4Q6ZS81 3184 aa4.93□□□□□ -1.62
VPS13A-203ENST00000360280 XP32Q5T750 250 aa4.9□□□□□ -1.62
VPS13A-203ENST00000360280 DSPP15924 2871 aaKnown RBP4.9□□□□□ -1.62
VPS13A-203ENST00000360280 UNC80Q8N2C7 3258 aa4.9□□□□□ -1.63
VPS13A-203ENST00000360280 CHD7Q9P2D1 2997 aa4.89□□□□□ -1.63
VPS13A-203ENST00000360280 RANBP2P49792 3224 aaKnown RBP4.88□□□□□ -1.63
VPS13A-203ENST00000360280 DNAH14Q0VDD8 3507 aa4.88□□□□□ -1.63
VPS13A-203ENST00000360280 TRIOO75962 3097 aa4.88□□□□□ -1.63
VPS13A-203ENST00000360280 KALRNO60229 2985 aa4.88□□□□□ -1.63
VPS13A-203ENST00000360280 HIVEP1P15822 2718 aa4.88□□□□□ -1.63
VPS13A-203ENST00000360280 TGP01266 2768 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms