RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 A0A0U1RQV1 116 aa5.55□□□□□ -1.52
UPF2-202ENST00000357604 KRTAP29-1A8MX34 341 aaPredicted RBP5.55□□□□□ -1.52
UPF2-202ENST00000357604 Q8N377 158 aa5.55□□□□□ -1.52
UPF2-202ENST00000357604 IGHV6-1A0A0B4J1U7 121 aa5.54□□□□□ -1.52
UPF2-202ENST00000357604 FAM218AQ96MZ4 157 aa5.54□□□□□ -1.52
UPF2-202ENST00000357604 IGFL1Q6UW32 110 aa5.54□□□□□ -1.52
UPF2-202ENST00000357604 ATP11AUNQ6ZP68 121 aa5.53□□□□□ -1.52
UPF2-202ENST00000357604 EIF4EBP3O60516 100 aaPredicted RBP5.52□□□□□ -1.53
UPF2-202ENST00000357604 ETDBQ3ZM63 59 aa5.52□□□□□ -1.53
UPF2-202ENST00000357604 ZFHX3Q15911 3703 aa5.52□□□□□ -1.53
UPF2-202ENST00000357604 CELSR1Q9NYQ6 3014 aa5.52□□□□□ -1.53
UPF2-202ENST00000357604 LINC00313P59037 77 aa5.52□□□□□ -1.53
UPF2-202ENST00000357604 C5orf47Q569G3 176 aa5.51□□□□□ -1.53
UPF2-202ENST00000357604 DYNC2H1Q8NCM8 4307 aaKnown RBP5.51□□□□□ -1.53
UPF2-202ENST00000357604 Q8NDZ9 215 aa5.51□□□□□ -1.53
UPF2-202ENST00000357604 Q6Q795 121 aa5.5□□□□□ -1.53
UPF2-202ENST00000357604 ANAPC13Q9BS18 74 aa5.5□□□□□ -1.53
UPF2-202ENST00000357604 TENM1Q9UKZ4 2725 aa5.49□□□□□ -1.53
UPF2-202ENST00000357604 KRTAP4-16G5E9R7 235 aaPredicted RBP5.49□□□□□ -1.53
UPF2-202ENST00000357604 KRTAP13-1Q8IUC0 172 aa5.49□□□□□ -1.53
UPF2-202ENST00000357604 IGLV8-61A0A075B6I0 122 aa5.48□□□□□ -1.53
UPF2-202ENST00000357604 MP68P56378 58 aa5.48□□□□□ -1.53
UPF2-202ENST00000357604 TRRAPQ9Y4A5 3859 aa5.48□□□□□ -1.53
UPF2-202ENST00000357604 Q6ZQT0 140 aa5.47□□□□□ -1.53
UPF2-202ENST00000357604 KRTAP7-1Q8IUC3 87 aa5.47□□□□□ -1.53
UPF2-202ENST00000357604 Q96NJ1 140 aa5.47□□□□□ -1.53
UPF2-202ENST00000357604 FAM236DA0A1B0GTK5 79 aa5.47□□□□□ -1.53
UPF2-202ENST00000357604 FAM236CP0DP71 79 aa5.47□□□□□ -1.53
UPF2-202ENST00000357604 SMIM20Q8N5G0 67 aa5.47□□□□□ -1.53
UPF2-202ENST00000357604 SEC61BP60468 96 aaKnown RBP5.46□□□□□ -1.54
UPF2-202ENST00000357604 LINC00643Q86TS7 51 aa5.46□□□□□ -1.54
UPF2-202ENST00000357604 DNAH1Q9P2D7 4330 aa5.44□□□□□ -1.54
UPF2-202ENST00000357604 FAM240AA0A1B0GVK7 77 aa5.44□□□□□ -1.54
UPF2-202ENST00000357604 CUBNO60494 3623 aa5.43□□□□□ -1.54
UPF2-202ENST00000357604 A8MWP4 228 aa5.43□□□□□ -1.54
UPF2-202ENST00000357604 CASC2Q6XLA1 102 aa5.43□□□□□ -1.54
UPF2-202ENST00000357604 KRTAP11-1Q8IUC1 163 aa5.43□□□□□ -1.54
UPF2-202ENST00000357604 VWFP04275 2813 aa5.42□□□□□ -1.54
UPF2-202ENST00000357604 C9orf92A6NGG3 77 aa5.42□□□□□ -1.54
UPF2-202ENST00000357604 CXCL6P80162 114 aa5.42□□□□□ -1.54
UPF2-202ENST00000357604 NBEAL1Q6ZS30 2694 aa5.42□□□□□ -1.54
UPF2-202ENST00000357604 IGKV3D-7A0A0C4DH55 119 aa5.41□□□□□ -1.54
UPF2-202ENST00000357604 RETNLBQ9BQ08 111 aa5.41□□□□□ -1.54
UPF2-202ENST00000357604 SMIM29Q86T20 159 aa5.4□□□□□ -1.54
UPF2-202ENST00000357604 TP53AIP1Q9HCN2 124 aa5.4□□□□□ -1.54
UPF2-202ENST00000357604 A0A1B0GVX0 72 aa5.4□□□□□ -1.54
UPF2-202ENST00000357604 Q6ZVQ6 151 aa5.4□□□□□ -1.54
UPF2-202ENST00000357604 WFDC13Q8IUB5 93 aa5.4□□□□□ -1.54
UPF2-202ENST00000357604 HCG22E2RYF7 251 aa5.4□□□□□ -1.55
UPF2-202ENST00000357604 TMEM258P61165 79 aa5.4□□□□□ -1.55
UPF2-202ENST00000357604 A0A087X002 238 aa5.39□□□□□ -1.55
UPF2-202ENST00000357604 hDV103S1A0JD37 113 aa5.39□□□□□ -1.55
UPF2-202ENST00000357604 OBSCN-AS1Q96MR7 158 aa5.39□□□□□ -1.55
UPF2-202ENST00000357604 DEFB116Q30KQ4 102 aa5.38□□□□□ -1.55
UPF2-202ENST00000357604 TMEM254Q8TBM7 123 aa5.38□□□□□ -1.55
UPF2-202ENST00000357604 LINC01547P58512 204 aaPredicted RBP5.38□□□□□ -1.55
UPF2-202ENST00000357604 Q5XG85 94 aa5.38□□□□□ -1.55
UPF2-202ENST00000357604 DNHD1Q96M86 4753 aa5.38□□□□□ -1.55
UPF2-202ENST00000357604 ATOX1O00244 68 aa5.38□□□□□ -1.55
UPF2-202ENST00000357604 COX6B2Q6YFQ2 88 aa5.37□□□□□ -1.55
UPF2-202ENST00000357604 ASB16-AS1Q495Z4 193 aa5.37□□□□□ -1.55
UPF2-202ENST00000357604 DNAH7Q8WXX0 4024 aa5.37□□□□□ -1.55
UPF2-202ENST00000357604 DSCR10P59022 87 aa5.37□□□□□ -1.55
UPF2-202ENST00000357604 KRTAP13-2Q52LG2 175 aa5.36□□□□□ -1.55
UPF2-202ENST00000357604 KRTAP1-4P0C5Y4 121 aa5.35□□□□□ -1.55
UPF2-202ENST00000357604 NBEAL2Q6ZNJ1 2754 aa5.35□□□□□ -1.55
UPF2-202ENST00000357604 C8orf17Q9NRJ1 99 aa5.34□□□□□ -1.55
UPF2-202ENST00000357604 RBM12B-AS1Q9P1G2 102 aa5.34□□□□□ -1.55
UPF2-202ENST00000357604 VPS13DQ5THJ4 4388 aa5.34□□□□□ -1.55
UPF2-202ENST00000357604 MRPL34Q9BQ48 92 aaKnown RBP5.34□□□□□ -1.55
UPF2-202ENST00000357604 A0A1W2PNM2 257 aa5.34□□□□□ -1.55
UPF2-202ENST00000357604 UQCRQO14949 82 aa5.32□□□□□ -1.56
UPF2-202ENST00000357604 MEGF8Q7Z7M0 2845 aa5.32□□□□□ -1.56
UPF2-202ENST00000357604 PRR15Q8IV56 129 aa5.32□□□□□ -1.56
UPF2-202ENST00000357604 IMUPQ9GZP8 106 aa5.32□□□□□ -1.56
UPF2-202ENST00000357604 PRKDCP78527 4128 aaKnown RBP5.31□□□□□ -1.56
UPF2-202ENST00000357604 SEC61GP60059 68 aa5.31□□□□□ -1.56
UPF2-202ENST00000357604 PKD1L1Q8TDX9 2849 aa5.31□□□□□ -1.56
UPF2-202ENST00000357604 KRTAP10-8P60410 259 aa5.31□□□□□ -1.56
UPF2-202ENST00000357604 A0A0G2JQZ4 141 aa5.3□□□□□ -1.56
UPF2-202ENST00000357604 C1orf195Q5TG92 126 aa5.3□□□□□ -1.56
UPF2-202ENST00000357604 LINC00846Q9NV44 126 aa5.3□□□□□ -1.56
UPF2-202ENST00000357604 PLECQ15149 4684 aaKnown RBP5.3□□□□□ -1.56
UPF2-202ENST00000357604 CHKB-CPT1BH3BT56 60 aa5.29□□□□□ -1.56
UPF2-202ENST00000357604 PRO0461Q9UI25 63 aa5.28□□□□□ -1.56
UPF2-202ENST00000357604 SPTSSBQ8NFR3 76 aa5.27□□□□□ -1.57
UPF2-202ENST00000357604 STAB2Q8WWQ8 2551 aa5.27□□□□□ -1.57
UPF2-202ENST00000357604 DNAH10Q8IVF4 4471 aa5.27□□□□□ -1.57
UPF2-202ENST00000357604 DNAH17Q9UFH2 4485 aa5.26□□□□□ -1.57
UPF2-202ENST00000357604 TENM2Q9NT68 2774 aa5.26□□□□□ -1.57
UPF2-202ENST00000357604 SMCPP49901 116 aaPredicted RBP5.26□□□□□ -1.57
UPF2-202ENST00000357604 TPRXLQ17RH7 258 aa5.26□□□□□ -1.57
UPF2-202ENST00000357604 IGKV2D-30A0A075B6S6 120 aa5.25□□□□□ -1.57
UPF2-202ENST00000357604 IGKV2-30P06310 120 aa5.25□□□□□ -1.57
UPF2-202ENST00000357604 TENM3Q9P273 2699 aa5.24□□□□□ -1.57
UPF2-202ENST00000357604 K7EQZ3 153 aa5.24□□□□□ -1.57
UPF2-202ENST00000357604 DNAH11Q96DT5 4516 aa5.24□□□□□ -1.57
UPF2-202ENST00000357604 H3BPC8 53 aa5.24□□□□□ -1.57
UPF2-202ENST00000357604 LOC101927531A0A1B0GV80 90 aa5.23□□□□□ -1.57
UPF2-202ENST00000357604 H0Y9P7 68 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms