RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CSAG1Q6PB30 78 aa4.44□□□□□ -1.7
VPS13A-202ENST00000357409 LCA10Q71F78 164 aa4.43□□□□□ -1.7
VPS13A-202ENST00000357409 CRYBG3Q68DQ2 2970 aa4.42□□□□□ -1.7
VPS13A-202ENST00000357409 A0A087X002 238 aa4.42□□□□□ -1.7
VPS13A-202ENST00000357409 M0QZ58 72 aa4.42□□□□□ -1.7
VPS13A-202ENST00000357409 ZNF462Q96JM2 2506 aa4.42□□□□□ -1.7
VPS13A-202ENST00000357409 DMXL2Q8TDJ6 3036 aa4.41□□□□□ -1.7
VPS13A-202ENST00000357409 ZCCHC13Q8WW36 166 aaKnown RBP4.4□□□□□ -1.7
VPS13A-202ENST00000357409 ADM2Q7Z4H4 148 aa4.4□□□□□ -1.7
VPS13A-202ENST00000357409 LRRK2Q5S007 2527 aa4.4□□□□□ -1.7
VPS13A-202ENST00000357409 LCE6AA0A183 80 aa4.4□□□□□ -1.71
VPS13A-202ENST00000357409 ADGRG4Q8IZF6 3080 aa4.39□□□□□ -1.71
VPS13A-202ENST00000357409 PLAC8Q9NZF1 115 aa4.39□□□□□ -1.71
VPS13A-202ENST00000357409 PLAC4Q8WY50 150 aa4.39□□□□□ -1.71
VPS13A-202ENST00000357409 H1FX-AS1Q4G0G2 97 aa4.38□□□□□ -1.71
VPS13A-202ENST00000357409 A0A1B0GW54 56 aa4.38□□□□□ -1.71
VPS13A-202ENST00000357409 ABCA12Q86UK0 2595 aa4.38□□□□□ -1.71
VPS13A-202ENST00000357409 CYSTM1Q9H1C7 97 aa4.38□□□□□ -1.71
VPS13A-202ENST00000357409 CYP4F30PQ9H0H9 118 aa4.38□□□□□ -1.71
VPS13A-202ENST00000357409 RPS28P62857 69 aaKnown RBP4.38□□□□□ -1.71
VPS13A-202ENST00000357409 NOTCH2NLQ7Z3S9 236 aa4.37□□□□□ -1.71
VPS13A-202ENST00000357409 ZFYVE26Q68DK2 2539 aa4.37□□□□□ -1.71
VPS13A-202ENST00000357409 ACANP16112 2415 aa4.37□□□□□ -1.71
VPS13A-202ENST00000357409 Q5W150 140 aa4.37□□□□□ -1.71
VPS13A-202ENST00000357409 SEC61BP60468 96 aaKnown RBP4.37□□□□□ -1.71
VPS13A-202ENST00000357409 KRTAP11-1Q8IUC1 163 aa4.37□□□□□ -1.71
VPS13A-202ENST00000357409 MUC3AQ02505 3323 aa4.36□□□□□ -1.71
VPS13A-202ENST00000357409 MMP24-AS1A0A0U1RRL7 71 aa4.36□□□□□ -1.71
VPS13A-202ENST00000357409 LINC00483Q53H64 154 aa4.36□□□□□ -1.71
VPS13A-202ENST00000357409 F8P00451 2351 aa4.35□□□□□ -1.71
VPS13A-202ENST00000357409 CR1P17927 2039 aa4.34□□□□□ -1.71
VPS13A-202ENST00000357409 KLK9Q2XQG4 91 aa4.34□□□□□ -1.71
VPS13A-202ENST00000357409 FP248Q71RG6 208 aaPredicted RBP4.34□□□□□ -1.72
VPS13A-202ENST00000357409 POLQO75417 2590 aa4.33□□□□□ -1.72
VPS13A-202ENST00000357409 Q1T7F1 81 aa4.33□□□□□ -1.72
VPS13A-202ENST00000357409 MYO18BQ8IUG5 2567 aa4.33□□□□□ -1.72
VPS13A-202ENST00000357409 A8MU10 97 aa4.33□□□□□ -1.72
VPS13A-202ENST00000357409 SVEP1Q4LDE5 3571 aa4.32□□□□□ -1.72
VPS13A-202ENST00000357409 OCR1Q9BZK8 76 aa4.32□□□□□ -1.72
VPS13A-202ENST00000357409 KTN1-AS1Q86SY8 53 aa4.31□□□□□ -1.72
VPS13A-202ENST00000357409 KRTAP26-1Q6PEX3 210 aa4.3□□□□□ -1.72
VPS13A-202ENST00000357409 KALRNO60229 2985 aa4.29□□□□□ -1.72
VPS13A-202ENST00000357409 Q6ZR54 194 aa4.29□□□□□ -1.72
VPS13A-202ENST00000357409 DMAC1Q96GE9 116 aa4.29□□□□□ -1.72
VPS13A-202ENST00000357409 ASH1LQ9NR48 2969 aaKnown RBP4.29□□□□□ -1.72
VPS13A-202ENST00000357409 TLN2Q9Y4G6 2542 aa4.29□□□□□ -1.72
VPS13A-202ENST00000357409 CSMD2Q7Z408 3487 aa4.29□□□□□ -1.72
VPS13A-202ENST00000357409 DMDP11532 3685 aa4.27□□□□□ -1.73
VPS13A-202ENST00000357409 C20orf166-AS1Q96NR2 134 aa4.26□□□□□ -1.73
VPS13A-202ENST00000357409 TNRC18O15417 2968 aaPredicted RBP4.26□□□□□ -1.73
VPS13A-202ENST00000357409 PIEZO1Q92508 2521 aa4.26□□□□□ -1.73
VPS13A-202ENST00000357409 FASNP49327 2511 aaKnown RBP4.25□□□□□ -1.73
VPS13A-202ENST00000357409 LINC00472Q9H8W2 130 aa4.25□□□□□ -1.73
VPS13A-202ENST00000357409 NBPF19A0A087WUL8 3843 aa4.24□□□□□ -1.73
VPS13A-202ENST00000357409 DMXL1Q9Y485 3027 aa4.23□□□□□ -1.73
VPS13A-202ENST00000357409 SMG1Q96Q15 3661 aaKnown RBP4.23□□□□□ -1.73
VPS13A-202ENST00000357409 A8MUU9 505 aa4.22□□□□□ -1.73
VPS13A-202ENST00000357409 SPRR1AP35321 89 aa4.22□□□□□ -1.73
VPS13A-202ENST00000357409 SPANXA2-OT1Q8N9U9 137 aa4.21□□□□□ -1.73
VPS13A-202ENST00000357409 USP9XQ93008 2570 aaPredicted RBP4.21□□□□□ -1.73
VPS13A-202ENST00000357409 RPL37P61927 97 aaKnown RBP4.21□□□□□ -1.74
VPS13A-202ENST00000357409 OXTP01178 125 aa4.18□□□□□ -1.74
VPS13A-202ENST00000357409 KRTAP10-8P60410 259 aa4.18□□□□□ -1.74
VPS13A-202ENST00000357409 SETD2Q9BYW2 2564 aaPredicted RBP4.18□□□□□ -1.74
VPS13A-202ENST00000357409 Q5VV11 94 aa4.18□□□□□ -1.74
VPS13A-202ENST00000357409 CHD9Q3L8U1 2897 aa4.18□□□□□ -1.74
VPS13A-202ENST00000357409 PRRC2CQ9Y520 2896 aaKnown RBP4.18□□□□□ -1.74
VPS13A-202ENST00000357409 ROMO1P60602 79 aa4.17□□□□□ -1.74
VPS13A-202ENST00000357409 CHD8Q9HCK8 2581 aa4.17□□□□□ -1.74
VPS13A-202ENST00000357409 LINC01558Q9Y6Z2 57 aa4.17□□□□□ -1.74
VPS13A-202ENST00000357409 TACC2O95359 2948 aa4.17□□□□□ -1.74
VPS13A-202ENST00000357409 PKD1L2Q7Z442 2459 aa4.16□□□□□ -1.74
VPS13A-202ENST00000357409 H3BS24 57 aa4.16□□□□□ -1.74
VPS13A-202ENST00000357409 KRTAP7-1Q8IUC3 87 aa4.15□□□□□ -1.75
VPS13A-202ENST00000357409 ANKRD17O75179 2603 aaKnown RBP4.15□□□□□ -1.75
VPS13A-202ENST00000357409 SPTBN4Q9H254 2564 aa4.13□□□□□ -1.75
VPS13A-202ENST00000357409 Q5XG85 94 aa4.13□□□□□ -1.75
VPS13A-202ENST00000357409 HECTD1Q9ULT8 2610 aa4.13□□□□□ -1.75
VPS13A-202ENST00000357409 Q75L30 129 aa4.12□□□□□ -1.75
VPS13A-202ENST00000357409 KRTAP13-2Q52LG2 175 aa4.12□□□□□ -1.75
VPS13A-202ENST00000357409 SPENQ96T58 3664 aaKnown RBP4.11□□□□□ -1.75
VPS13A-202ENST00000357409 ZZEF1O43149 2961 aa4.11□□□□□ -1.75
VPS13A-202ENST00000357409 ANKRD11Q6UB99 2663 aaPredicted RBP4.11□□□□□ -1.75
VPS13A-202ENST00000357409 SPRR1BP22528 89 aa4.1□□□□□ -1.75
VPS13A-202ENST00000357409 MTORP42345 2549 aa4.1□□□□□ -1.75
VPS13A-202ENST00000357409 C10orf95Q9H7T3 257 aa4.1□□□□□ -1.75
VPS13A-202ENST00000357409 USP9YO00507 2555 aaPredicted RBP4.09□□□□□ -1.75
VPS13A-202ENST00000357409 MGAM2Q2M2H8 2515 aa4.08□□□□□ -1.76
VPS13A-202ENST00000357409 LRBAP50851 2863 aa4.07□□□□□ -1.76
VPS13A-202ENST00000357409 KRTAP10-10P60014 251 aa4.07□□□□□ -1.76
VPS13A-202ENST00000357409 A0A0A0MQY5 61 aa4.07□□□□□ -1.76
VPS13A-202ENST00000357409 Q6ZRN7 208 aaPredicted RBP4.05□□□□□ -1.76
VPS13A-202ENST00000357409 USP24Q9UPU5 2620 aa4.05□□□□□ -1.76
VPS13A-202ENST00000357409 KRTAP4-16G5E9R7 235 aaPredicted RBP4.05□□□□□ -1.76
VPS13A-202ENST00000357409 NDUFAF8A1L188 74 aa3.99□□□□□ -1.77
VPS13A-202ENST00000357409 TNP1P09430 55 aa3.99□□□□□ -1.77
VPS13A-202ENST00000357409 KRTAP29-1A8MX34 341 aaPredicted RBP3.99□□□□□ -1.77
VPS13A-202ENST00000357409 CEP295Q9C0D2 2601 aa3.99□□□□□ -1.77
VPS13A-202ENST00000357409 AKAP13Q12802 2813 aa3.98□□□□□ -1.77
VPS13A-202ENST00000357409 DSPP15924 2871 aaKnown RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms