RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FAM229BQ4G0N7 80 aa7.72□□□□□ -1.17
USP1-201ENST00000339950 FP248Q71RG6 208 aaPredicted RBP7.72□□□□□ -1.17
USP1-201ENST00000339950 TGP01266 2768 aa7.72□□□□□ -1.17
USP1-201ENST00000339950 K7EIL1 84 aa7.72□□□□□ -1.17
USP1-201ENST00000339950 LINC00476Q8WZB0 136 aa7.72□□□□□ -1.17
USP1-201ENST00000339950 H0Y9P7 68 aa7.72□□□□□ -1.17
USP1-201ENST00000339950 C1orf64Q8NEQ6 169 aa7.72□□□□□ -1.17
USP1-201ENST00000339950 HCG22E2RYF7 251 aa7.71□□□□□ -1.17
USP1-201ENST00000339950 ANAPC11Q9NYG5 84 aa7.71□□□□□ -1.18
USP1-201ENST00000339950 A0A1W2PNM2 257 aa7.71□□□□□ -1.18
USP1-201ENST00000339950 CASC2Q6XLA1 102 aa7.7□□□□□ -1.18
USP1-201ENST00000339950 SPAG11AQ6PDA7 123 aa7.69□□□□□ -1.18
USP1-201ENST00000339950 B9D2Q9BPU9 175 aa7.69□□□□□ -1.18
USP1-201ENST00000339950 IGLV1-50A0A075B6I6 118 aa7.67□□□□□ -1.18
USP1-201ENST00000339950 RETNLBQ9BQ08 111 aa7.67□□□□□ -1.18
USP1-201ENST00000339950 BCE1O60756 84 aa7.66□□□□□ -1.18
USP1-201ENST00000339950 KCNQ1DNQ9H478 68 aa7.66□□□□□ -1.18
USP1-201ENST00000339950 WIPF1O43516 503 aa7.66□□□□□ -1.18
USP1-201ENST00000339950 Q8NBF4 154 aa7.66□□□□□ -1.18
USP1-201ENST00000339950 KRTAP26-1Q6PEX3 210 aa7.65□□□□□ -1.19
USP1-201ENST00000339950 EPM2AB3EWF7 344 aa7.64□□□□□ -1.19
USP1-201ENST00000339950 KRTAP1-5Q9BYS1 174 aa7.64□□□□□ -1.19
USP1-201ENST00000339950 IGHV6-1A0A0B4J1U7 121 aa7.64□□□□□ -1.19
USP1-201ENST00000339950 TRAV22A0A0B4J277 110 aa7.64□□□□□ -1.19
USP1-201ENST00000339950 DMBT1Q9UGM3 2413 aaPredicted RBP7.63□□□□□ -1.19
USP1-201ENST00000339950 H3BNG1 76 aa7.62□□□□□ -1.19
USP1-201ENST00000339950 LY6G6CO95867 125 aa7.62□□□□□ -1.19
USP1-201ENST00000339950 IGFL1Q6UW32 110 aa7.62□□□□□ -1.19
USP1-201ENST00000339950 MDFIQ99750 246 aa7.61□□□□□ -1.19
USP1-201ENST00000339950 CIRBP-AS1Q8TBR5 109 aa7.58□□□□□ -1.2
USP1-201ENST00000339950 OCR1Q9BZK8 76 aa7.57□□□□□ -1.2
USP1-201ENST00000339950 hDV103S1A0JD37 113 aa7.55□□□□□ -1.2
USP1-201ENST00000339950 MOBPQ13875 183 aa7.55□□□□□ -1.2
USP1-201ENST00000339950 DSCR10P59022 87 aa7.54□□□□□ -1.2
USP1-201ENST00000339950 LIMD2Q9BT23 127 aa7.54□□□□□ -1.2
USP1-201ENST00000339950 C16orf90A8MZG2 172 aa7.54□□□□□ -1.2
USP1-201ENST00000339950 F8WDY8 70 aa7.54□□□□□ -1.2
USP1-201ENST00000339950 KRTAP7-1Q8IUC3 87 aa7.53□□□□□ -1.2
USP1-201ENST00000339950 C14orf177Q52M58 125 aa7.53□□□□□ -1.2
USP1-201ENST00000339950 SPINK1P00995 79 aa7.52□□□□□ -1.21
USP1-201ENST00000339950 IGLV8-61A0A075B6I0 122 aa7.52□□□□□ -1.21
USP1-201ENST00000339950 IGLV5-48A0A075B6I7 105 aa7.52□□□□□ -1.21
USP1-201ENST00000339950 PANO1I0J062 215 aa7.52□□□□□ -1.21
USP1-201ENST00000339950 KRTAP11-1Q8IUC1 163 aa7.52□□□□□ -1.21
USP1-201ENST00000339950 NBDYA0A0U1RRE5 68 aa7.49□□□□□ -1.21
USP1-201ENST00000339950 COA5Q86WW8 74 aa7.48□□□□□ -1.21
USP1-201ENST00000339950 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.47□□□□□ -1.21
USP1-201ENST00000339950 FBN3Q75N90 2809 aa7.47□□□□□ -1.21
USP1-201ENST00000339950 IGLV5-52A0A0A0MRZ9 124 aa7.46□□□□□ -1.22
USP1-201ENST00000339950 TLX1NBP0CAT3 122 aa7.45□□□□□ -1.22
USP1-201ENST00000339950 A8MU10 97 aa7.42□□□□□ -1.22
USP1-201ENST00000339950 APLNQ9ULZ1 77 aa7.42□□□□□ -1.22
USP1-201ENST00000339950 RTL8CO15255 209 aa7.41□□□□□ -1.22
USP1-201ENST00000339950 C9orf163Q8N9P6 203 aa7.41□□□□□ -1.22
USP1-201ENST00000339950 FLG2Q5D862 2391 aaPredicted RBP7.41□□□□□ -1.22
USP1-201ENST00000339950 CD164Q04900 197 aa7.41□□□□□ -1.22
USP1-201ENST00000339950 PRR15Q8IV56 129 aa7.41□□□□□ -1.22
USP1-201ENST00000339950 KRTAP4-16G5E9R7 235 aaPredicted RBP7.4□□□□□ -1.22
USP1-201ENST00000339950 SPRR1AP35321 89 aa7.4□□□□□ -1.23
USP1-201ENST00000339950 PLA2G2DQ9UNK4 145 aa7.4□□□□□ -1.23
USP1-201ENST00000339950 NUPR2A6NF83 97 aa7.39□□□□□ -1.23
USP1-201ENST00000339950 SPRR4Q96PI1 79 aa7.39□□□□□ -1.23
USP1-201ENST00000339950 PSORS1C2Q9UIG4 136 aa7.38□□□□□ -1.23
USP1-201ENST00000339950 LOC101927531A0A1B0GV80 90 aa7.38□□□□□ -1.23
USP1-201ENST00000339950 PRR26Q8N8Z3 221 aa7.38□□□□□ -1.23
USP1-201ENST00000339950 IGKV2D-30A0A075B6S6 120 aa7.38□□□□□ -1.23
USP1-201ENST00000339950 IGKV2-30P06310 120 aa7.38□□□□□ -1.23
USP1-201ENST00000339950 TNP2Q05952 138 aa7.37□□□□□ -1.23
USP1-201ENST00000339950 KTN1-AS1Q86SY8 53 aa7.37□□□□□ -1.23
USP1-201ENST00000339950 Q1T7F1 81 aa7.36□□□□□ -1.23
USP1-201ENST00000339950 A0A1B0GU69 56 aa7.36□□□□□ -1.23
USP1-201ENST00000339950 A8MWP4 228 aa7.36□□□□□ -1.23
USP1-201ENST00000339950 ATP11AUNQ6ZP68 121 aa7.36□□□□□ -1.23
USP1-201ENST00000339950 IGLV5-37A0A075B6J1 123 aa7.35□□□□□ -1.23
USP1-201ENST00000339950 C1orf134Q5TEV5 83 aa7.35□□□□□ -1.23
USP1-201ENST00000339950 SPACA4Q8TDM5 124 aa7.35□□□□□ -1.23
USP1-201ENST00000339950 RBM12B-AS1Q9P1G2 102 aa7.35□□□□□ -1.23
USP1-201ENST00000339950 A0A1B0GW54 56 aa7.35□□□□□ -1.23
USP1-201ENST00000339950 A0A087WTM6 91 aa7.34□□□□□ -1.23
USP1-201ENST00000339950 C4orf48Q5BLP8 95 aa7.34□□□□□ -1.23
USP1-201ENST00000339950 CNBPP62633 177 aaKnown RBP7.34□□□□□ -1.24
USP1-201ENST00000339950 Q8N9P0 234 aaPredicted RBP7.32□□□□□ -1.24
USP1-201ENST00000339950 PRAC1Q96KF2 57 aa7.32□□□□□ -1.24
USP1-201ENST00000339950 Q5VV11 94 aa7.32□□□□□ -1.24
USP1-201ENST00000339950 CYP4F30PQ9H0H9 118 aa7.3□□□□□ -1.24
USP1-201ENST00000339950 A0A087X002 238 aa7.28□□□□□ -1.24
USP1-201ENST00000339950 NOTCH2NLQ7Z3S9 236 aa7.28□□□□□ -1.24
USP1-201ENST00000339950 C8orf17Q9NRJ1 99 aa7.27□□□□□ -1.24
USP1-201ENST00000339950 H3BPC8 53 aa7.27□□□□□ -1.25
USP1-201ENST00000339950 TP53AIP1Q9HCN2 124 aa7.27□□□□□ -1.25
USP1-201ENST00000339950 ZNF706Q9Y5V0 76 aaPredicted RBP7.27□□□□□ -1.25
USP1-201ENST00000339950 C7orf65Q6ZTY9 151 aa7.27□□□□□ -1.25
USP1-201ENST00000339950 ACYP2P14621 99 aa7.26□□□□□ -1.25
USP1-201ENST00000339950 SMR3BP02814 79 aaPredicted RBP7.26□□□□□ -1.25
USP1-201ENST00000339950 ANK2Q01484 3957 aa7.24□□□□□ -1.25
USP1-201ENST00000339950 MEGF8Q7Z7M0 2845 aa7.24□□□□□ -1.25
USP1-201ENST00000339950 C8orf87E5RJ46 101 aa7.23□□□□□ -1.25
USP1-201ENST00000339950 ZNF861PO60384 105 aa7.23□□□□□ -1.25
USP1-201ENST00000339950 MRPL34Q9BQ48 92 aaKnown RBP7.23□□□□□ -1.25
USP1-201ENST00000339950 SPINK7P58062 85 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms