RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ABCA2Q9BZC7 2435 aa1.89□□□□□ -2.11
NEDD4-201ENST00000338963 ACACAQ13085 2346 aa1.89□□□□□ -2.11
NEDD4-201ENST00000338963 USP34Q70CQ2 3546 aa1.88□□□□□ -2.11
NEDD4-201ENST00000338963 FLG2Q5D862 2391 aaPredicted RBP1.88□□□□□ -2.11
NEDD4-201ENST00000338963 HIVEP2P31629 2446 aa1.88□□□□□ -2.11
NEDD4-201ENST00000338963 ZNF462Q96JM2 2506 aa1.87□□□□□ -2.11
NEDD4-201ENST00000338963 TTC28Q96AY4 2481 aa1.87□□□□□ -2.11
NEDD4-201ENST00000338963 PKD1L2Q7Z442 2459 aa1.86□□□□□ -2.11
NEDD4-201ENST00000338963 GVINP1Q7Z2Y8 2422 aa1.86□□□□□ -2.11
NEDD4-201ENST00000338963 F8P00451 2351 aa1.85□□□□□ -2.11
NEDD4-201ENST00000338963 LCE2AQ5TA79 106 aaPredicted RBP1.85□□□□□ -2.11
NEDD4-201ENST00000338963 KRTAP10-1P60331 282 aa1.85□□□□□ -2.11
NEDD4-201ENST00000338963 LCE2CQ5TA81 110 aa1.85□□□□□ -2.11
NEDD4-201ENST00000338963 ATRXP46100 2492 aa1.85□□□□□ -2.11
NEDD4-201ENST00000338963 KRTAP10-2P60368 255 aa1.84□□□□□ -2.11
NEDD4-201ENST00000338963 NAV2Q8IVL1 2488 aa1.83□□□□□ -2.12
NEDD4-201ENST00000338963 RIF1Q5UIP0 2472 aaKnown RBP1.83□□□□□ -2.12
NEDD4-201ENST00000338963 DOPEY1Q5JWR5 2465 aa1.83□□□□□ -2.12
NEDD4-201ENST00000338963 CACNA1AO00555 2505 aa1.83□□□□□ -2.12
NEDD4-201ENST00000338963 A0A0C4DFX4 3053 aa1.82□□□□□ -2.12
NEDD4-201ENST00000338963 NCOR2Q9Y618 2525 aa1.82□□□□□ -2.12
NEDD4-201ENST00000338963 A0A1B0GVY2 172 aa1.82□□□□□ -2.12
NEDD4-201ENST00000338963 OTOGLQ3ZCN5 2332 aa1.82□□□□□ -2.12
NEDD4-201ENST00000338963 DNAH2Q9P225 4427 aa1.81□□□□□ -2.12
NEDD4-201ENST00000338963 HIVEP3Q5T1R4 2406 aa1.81□□□□□ -2.12
NEDD4-201ENST00000338963 CEP290O15078 2479 aa1.81□□□□□ -2.12
NEDD4-201ENST00000338963 IGF2RP11717 2491 aa1.81□□□□□ -2.12
NEDD4-201ENST00000338963 M0R2T5 61 aa1.8□□□□□ -2.12
NEDD4-201ENST00000338963 ZFHX2Q9C0A1 2572 aaPredicted RBP1.8□□□□□ -2.12
NEDD4-201ENST00000338963 TLN2Q9Y4G6 2542 aa1.8□□□□□ -2.12
NEDD4-201ENST00000338963 TLN1Q9Y490 2541 aaKnown RBP1.8□□□□□ -2.12
NEDD4-201ENST00000338963 DNAH11Q96DT5 4516 aa1.79□□□□□ -2.12
NEDD4-201ENST00000338963 CHD9Q3L8U1 2897 aa1.79□□□□□ -2.12
NEDD4-201ENST00000338963 MAP1AP78559 2803 aaPredicted RBP1.78□□□□□ -2.12
NEDD4-201ENST00000338963 SPG11Q96JI7 2443 aa1.78□□□□□ -2.12
NEDD4-201ENST00000338963 FN1P02751 2386 aaKnown RBP1.78□□□□□ -2.12
NEDD4-201ENST00000338963 SPTBN4Q9H254 2564 aa1.78□□□□□ -2.13
NEDD4-201ENST00000338963 ACANP16112 2415 aa1.77□□□□□ -2.13
NEDD4-201ENST00000338963 MYO9AB2RTY4 2548 aa1.77□□□□□ -2.13
NEDD4-201ENST00000338963 JMJD1CQ15652 2540 aa1.77□□□□□ -2.13
NEDD4-201ENST00000338963 CHD8Q9HCK8 2581 aa1.76□□□□□ -2.13
NEDD4-201ENST00000338963 FAM208BQ5VWN6 2430 aa1.76□□□□□ -2.13
NEDD4-201ENST00000338963 CHD6Q8TD26 2715 aa1.76□□□□□ -2.13
NEDD4-201ENST00000338963 EP400Q96L91 3159 aa1.75□□□□□ -2.13
NEDD4-201ENST00000338963 ZFYVE26Q68DK2 2539 aa1.75□□□□□ -2.13
NEDD4-201ENST00000338963 PIEZO2Q9H5I5 2752 aa1.75□□□□□ -2.13
NEDD4-201ENST00000338963 HUWE1Q7Z6Z7 4374 aaKnown RBP1.74□□□□□ -2.13
NEDD4-201ENST00000338963 MUC6Q6W4X9 2439 aa1.74□□□□□ -2.13
NEDD4-201ENST00000338963 BDP1A6H8Y1 2624 aa1.73□□□□□ -2.13
NEDD4-201ENST00000338963 SMR3BP02814 79 aaPredicted RBP1.73□□□□□ -2.13
NEDD4-201ENST00000338963 RYR2Q92736 4967 aa1.73□□□□□ -2.13
NEDD4-201ENST00000338963 ANKRD11Q6UB99 2663 aaPredicted RBP1.73□□□□□ -2.13
NEDD4-201ENST00000338963 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.73□□□□□ -2.13
NEDD4-201ENST00000338963 MTORP42345 2549 aa1.72□□□□□ -2.13
NEDD4-201ENST00000338963 SONP18583 2426 aaKnown RBP1.72□□□□□ -2.13
NEDD4-201ENST00000338963 VPS13DQ5THJ4 4388 aa1.72□□□□□ -2.13
NEDD4-201ENST00000338963 SETXQ7Z333 2677 aaKnown RBP1.71□□□□□ -2.14
NEDD4-201ENST00000338963 KRTAP10-10P60014 251 aa1.71□□□□□ -2.14
NEDD4-201ENST00000338963 USP9XQ93008 2570 aaPredicted RBP1.71□□□□□ -2.14
NEDD4-201ENST00000338963 ITPR1Q14643 2758 aa1.7□□□□□ -2.14
NEDD4-201ENST00000338963 EPG5Q9HCE0 2579 aa1.7□□□□□ -2.14
NEDD4-201ENST00000338963 GOLGB1Q14789 3259 aaKnown RBP1.7□□□□□ -2.14
NEDD4-201ENST00000338963 SPTBN5Q9NRC6 3674 aaKnown RBP1.7□□□□□ -2.14
NEDD4-201ENST00000338963 DNAH17Q9UFH2 4485 aa1.7□□□□□ -2.14
NEDD4-201ENST00000338963 KRTAP8-1Q8IUC2 63 aa1.7□□□□□ -2.14
NEDD4-201ENST00000338963 ZZEF1O43149 2961 aa1.7□□□□□ -2.14
NEDD4-201ENST00000338963 DNAH10Q8IVF4 4471 aa1.69□□□□□ -2.14
NEDD4-201ENST00000338963 UNC79Q9P2D8 2635 aa1.69□□□□□ -2.14
NEDD4-201ENST00000338963 TRANK1O15050 2925 aa1.69□□□□□ -2.14
NEDD4-201ENST00000338963 ACACBO00763 2458 aa1.69□□□□□ -2.14
NEDD4-201ENST00000338963 SACSQ9NZJ4 4579 aa1.69□□□□□ -2.14
NEDD4-201ENST00000338963 POLQO75417 2590 aa1.68□□□□□ -2.14
NEDD4-201ENST00000338963 KRTAP19-4Q3LI73 84 aa1.68□□□□□ -2.14
NEDD4-201ENST00000338963 FASNP49327 2511 aaKnown RBP1.68□□□□□ -2.14
NEDD4-201ENST00000338963 LORP23490 312 aaPredicted RBP1.68□□□□□ -2.14
NEDD4-201ENST00000338963 PTPN13Q12923 2485 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 MYCBP2O75592 4640 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 USP9YO00507 2555 aaPredicted RBP1.67□□□□□ -2.14
NEDD4-201ENST00000338963 RYR1P21817 5038 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 DNAH1Q9P2D7 4330 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 GCN1Q92616 2671 aaKnown RBP1.67□□□□□ -2.14
NEDD4-201ENST00000338963 LRRK2Q5S007 2527 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 CENPFP49454 3210 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 MAST4O15021 2626 aa1.67□□□□□ -2.14
NEDD4-201ENST00000338963 UTP20O75691 2785 aaKnown RBP1.66□□□□□ -2.14
NEDD4-201ENST00000338963 STAB2Q8WWQ8 2551 aa1.66□□□□□ -2.14
NEDD4-201ENST00000338963 APOBP04114 4563 aaKnown RBP1.66□□□□□ -2.14
NEDD4-201ENST00000338963 PRRC2CQ9Y520 2896 aaKnown RBP1.66□□□□□ -2.14
NEDD4-201ENST00000338963 HERC1Q15751 4861 aa1.66□□□□□ -2.14
NEDD4-201ENST00000338963 AKAP13Q12802 2813 aa1.66□□□□□ -2.14
NEDD4-201ENST00000338963 SRCAPQ6ZRS2 3230 aa1.65□□□□□ -2.14
NEDD4-201ENST00000338963 BAHCC1Q9P281 2608 aa1.65□□□□□ -2.15
NEDD4-201ENST00000338963 DNAH8Q96JB1 4490 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 UTRNP46939 3433 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 CHD7Q9P2D1 2997 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 DYNC2H1Q8NCM8 4307 aaKnown RBP1.64□□□□□ -2.15
NEDD4-201ENST00000338963 PCNTO95613 3336 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 LCE3AQ5TA76 89 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 TENM2Q9NT68 2774 aa1.64□□□□□ -2.15
NEDD4-201ENST00000338963 NBEAQ8NFP9 2946 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms