RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LOC400499M0QZD8 3231 aa7.43□□□□□ -1.22
VPS39-201ENST00000318006 WWC2-AS2Q96NR7 200 aa7.43□□□□□ -1.22
VPS39-201ENST00000318006 Q75L30 129 aa7.43□□□□□ -1.22
VPS39-201ENST00000318006 TYMSOSQ8TAI1 123 aa7.42□□□□□ -1.22
VPS39-201ENST00000318006 FAM229BQ4G0N7 80 aa7.42□□□□□ -1.22
VPS39-201ENST00000318006 FLNCQ14315 2725 aa7.41□□□□□ -1.22
VPS39-201ENST00000318006 FAM104AQ969W3 186 aa7.41□□□□□ -1.22
VPS39-201ENST00000318006 LRBAP50851 2863 aa7.39□□□□□ -1.23
VPS39-201ENST00000318006 PRR26Q8N8Z3 221 aa7.38□□□□□ -1.23
VPS39-201ENST00000318006 IGLV7-46A0A075B6I9 117 aa7.38□□□□□ -1.23
VPS39-201ENST00000318006 Q8N9P0 234 aaPredicted RBP7.38□□□□□ -1.23
VPS39-201ENST00000318006 SPRR4Q96PI1 79 aa7.38□□□□□ -1.23
VPS39-201ENST00000318006 C9orf163Q8N9P6 203 aa7.37□□□□□ -1.23
VPS39-201ENST00000318006 LINC01554Q52M75 96 aa7.36□□□□□ -1.23
VPS39-201ENST00000318006 CR1P17927 2039 aa7.36□□□□□ -1.23
VPS39-201ENST00000318006 OXTP01178 125 aa7.36□□□□□ -1.23
VPS39-201ENST00000318006 APLNQ9ULZ1 77 aa7.36□□□□□ -1.23
VPS39-201ENST00000318006 COL12A1Q99715 3063 aa7.36□□□□□ -1.23
VPS39-201ENST00000318006 ZNF861PO60384 105 aa7.34□□□□□ -1.23
VPS39-201ENST00000318006 CASC10Q5T4H9 136 aa7.34□□□□□ -1.23
VPS39-201ENST00000318006 LINC01558Q9Y6Z2 57 aa7.34□□□□□ -1.23
VPS39-201ENST00000318006 A0A087WTM6 91 aa7.34□□□□□ -1.24
VPS39-201ENST00000318006 MUC3AQ02505 3323 aa7.34□□□□□ -1.24
VPS39-201ENST00000318006 IGLV5-37A0A075B6J1 123 aa7.33□□□□□ -1.24
VPS39-201ENST00000318006 PLA2G1BP04054 148 aaKnown RBP7.33□□□□□ -1.24
VPS39-201ENST00000318006 ZZEF1O43149 2961 aa7.33□□□□□ -1.24
VPS39-201ENST00000318006 CHD6Q8TD26 2715 aa7.32□□□□□ -1.24
VPS39-201ENST00000318006 H3BS24 57 aa7.32□□□□□ -1.24
VPS39-201ENST00000318006 KALRNO60229 2985 aa7.31□□□□□ -1.24
VPS39-201ENST00000318006 DMDP11532 3685 aa7.31□□□□□ -1.24
VPS39-201ENST00000318006 Q5VV11 94 aa7.31□□□□□ -1.24
VPS39-201ENST00000318006 CNBPP62633 177 aaKnown RBP7.31□□□□□ -1.24
VPS39-201ENST00000318006 TEX15Q9BXT5 2789 aa7.31□□□□□ -1.24
VPS39-201ENST00000318006 UNC79Q9P2D8 2635 aa7.29□□□□□ -1.24
VPS39-201ENST00000318006 TEP1Q99973 2627 aaKnown RBP7.29□□□□□ -1.24
VPS39-201ENST00000318006 PRAC1Q96KF2 57 aa7.27□□□□□ -1.25
VPS39-201ENST00000318006 WDFY3Q8IZQ1 3526 aa7.27□□□□□ -1.25
VPS39-201ENST00000318006 ANAPC11Q9NYG5 84 aa7.26□□□□□ -1.25
VPS39-201ENST00000318006 TACC2O95359 2948 aa7.26□□□□□ -1.25
VPS39-201ENST00000318006 CFAP47Q6ZTR5 3102 aa7.25□□□□□ -1.25
VPS39-201ENST00000318006 Q8N1X5 172 aa7.24□□□□□ -1.25
VPS39-201ENST00000318006 PSORS1C2Q9UIG4 136 aa7.23□□□□□ -1.25
VPS39-201ENST00000318006 HRES1P13985 223 aa7.22□□□□□ -1.25
VPS39-201ENST00000318006 STAB1Q9NY15 2570 aa7.21□□□□□ -1.26
VPS39-201ENST00000318006 MMP24-AS1A0A0U1RRL7 71 aa7.21□□□□□ -1.26
VPS39-201ENST00000318006 IGLV7-43P04211 117 aa7.21□□□□□ -1.26
VPS39-201ENST00000318006 LINC00304Q8N9R0 145 aa7.21□□□□□ -1.26
VPS39-201ENST00000318006 Q8NDZ9 215 aa7.21□□□□□ -1.26
VPS39-201ENST00000318006 ITPR1Q14643 2758 aa7.2□□□□□ -1.26
VPS39-201ENST00000318006 A0A0D9SG42 100 aa7.2□□□□□ -1.26
VPS39-201ENST00000318006 COL6A5A8TX70 2615 aa7.2□□□□□ -1.26
VPS39-201ENST00000318006 UTP20O75691 2785 aaKnown RBP7.2□□□□□ -1.26
VPS39-201ENST00000318006 SPINK7P58062 85 aa7.19□□□□□ -1.26
VPS39-201ENST00000318006 GCN1Q92616 2671 aaKnown RBP7.19□□□□□ -1.26
VPS39-201ENST00000318006 LAMA5O15230 3695 aa7.18□□□□□ -1.26
VPS39-201ENST00000318006 A0A1B0GU33 70 aa7.18□□□□□ -1.26
VPS39-201ENST00000318006 SETXQ7Z333 2677 aaKnown RBP7.18□□□□□ -1.26
VPS39-201ENST00000318006 C9orf92A6NGG3 77 aa7.17□□□□□ -1.26
VPS39-201ENST00000318006 CSAG1Q6PB30 78 aa7.16□□□□□ -1.26
VPS39-201ENST00000318006 NOTCH1P46531 2555 aa7.16□□□□□ -1.26
VPS39-201ENST00000318006 ASPMQ8IZT6 3477 aa7.16□□□□□ -1.26
VPS39-201ENST00000318006 LUZP6Q538Z0 58 aa7.15□□□□□ -1.26
VPS39-201ENST00000318006 SPRR1AP35321 89 aa7.15□□□□□ -1.27
VPS39-201ENST00000318006 HRNRQ86YZ3 2850 aaPredicted RBP7.15□□□□□ -1.27
VPS39-201ENST00000318006 SMR3BP02814 79 aaPredicted RBP7.13□□□□□ -1.27
VPS39-201ENST00000318006 ITPR2Q14571 2701 aa7.12□□□□□ -1.27
VPS39-201ENST00000318006 RELNP78509 3460 aa7.11□□□□□ -1.27
VPS39-201ENST00000318006 LINC00472Q9H8W2 130 aa7.11□□□□□ -1.27
VPS39-201ENST00000318006 UBR5O95071 2799 aaPredicted RBP7.11□□□□□ -1.27
VPS39-201ENST00000318006 TNP2Q05952 138 aa7.1□□□□□ -1.27
VPS39-201ENST00000318006 ZANQ9Y493 2812 aa7.1□□□□□ -1.27
VPS39-201ENST00000318006 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.09□□□□□ -1.27
VPS39-201ENST00000318006 DCHS1Q96JQ0 3298 aa7.07□□□□□ -1.28
VPS39-201ENST00000318006 APCP25054 2843 aa7.07□□□□□ -1.28
VPS39-201ENST00000318006 NBEAL2Q6ZNJ1 2754 aa7.07□□□□□ -1.28
VPS39-201ENST00000318006 DMAC1Q96GE9 116 aa7.07□□□□□ -1.28
VPS39-201ENST00000318006 SPRR1BP22528 89 aa7.06□□□□□ -1.28
VPS39-201ENST00000318006 ZFHX4Q86UP3 3567 aa7.06□□□□□ -1.28
VPS39-201ENST00000318006 NBEAL1Q6ZS30 2694 aa7.05□□□□□ -1.28
VPS39-201ENST00000318006 ASB16-AS1Q495Z4 193 aa7.05□□□□□ -1.28
VPS39-201ENST00000318006 CRYBG3Q68DQ2 2970 aa7.05□□□□□ -1.28
VPS39-201ENST00000318006 Q5W150 140 aa7.03□□□□□ -1.28
VPS39-201ENST00000318006 BAHCC1Q9P281 2608 aa7.03□□□□□ -1.28
VPS39-201ENST00000318006 ZCCHC13Q8WW36 166 aaKnown RBP7.02□□□□□ -1.29
VPS39-201ENST00000318006 KRTAP26-1Q6PEX3 210 aa7.02□□□□□ -1.29
VPS39-201ENST00000318006 J3QL48 77 aa7.02□□□□□ -1.29
VPS39-201ENST00000318006 KRTAP1-5Q9BYS1 174 aa6.99□□□□□ -1.29
VPS39-201ENST00000318006 PLAC8Q9NZF1 115 aa6.99□□□□□ -1.29
VPS39-201ENST00000318006 DCHS2Q6V1P9 2916 aa6.99□□□□□ -1.29
VPS39-201ENST00000318006 CELSR2Q9HCU4 2923 aa6.98□□□□□ -1.29
VPS39-201ENST00000318006 A0A0A0MQY5 61 aa6.96□□□□□ -1.3
VPS39-201ENST00000318006 KRTAP29-1A8MX34 341 aaPredicted RBP6.96□□□□□ -1.3
VPS39-201ENST00000318006 HIVEP1P15822 2718 aa6.96□□□□□ -1.3
VPS39-201ENST00000318006 COX6B2Q6YFQ2 88 aa6.95□□□□□ -1.3
VPS39-201ENST00000318006 Q6ZR54 194 aa6.95□□□□□ -1.3
VPS39-201ENST00000318006 A6NN06 94 aa6.94□□□□□ -1.3
VPS39-201ENST00000318006 NSD1Q96L73 2696 aaPredicted RBP6.92□□□□□ -1.3
VPS39-201ENST00000318006 ASH1LQ9NR48 2969 aaKnown RBP6.92□□□□□ -1.3
VPS39-201ENST00000318006 ROMO1P60602 79 aa6.9□□□□□ -1.3
VPS39-201ENST00000318006 NF1P21359 2839 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms