RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PRR26Q8N8Z3 221 aa3.35□□□□□ -1.87
SCN1A-201ENST00000303395 LINC00472Q9H8W2 130 aa3.35□□□□□ -1.87
SCN1A-201ENST00000303395 ANAPC11Q9NYG5 84 aa3.35□□□□□ -1.87
SCN1A-201ENST00000303395 FAM168BA1KXE4 195 aa3.34□□□□□ -1.88
SCN1A-201ENST00000303395 KMT2BQ9UMN6 2715 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-201ENST00000303395 SPATA8Q6RVD6 105 aa3.33□□□□□ -1.88
SCN1A-201ENST00000303395 MMP24-AS1A0A0U1RRL7 71 aa3.32□□□□□ -1.88
SCN1A-201ENST00000303395 ITPR2Q14571 2701 aa3.32□□□□□ -1.88
SCN1A-201ENST00000303395 KRTAP29-1A8MX34 341 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-201ENST00000303395 IGSF10Q6WRI0 2623 aa3.31□□□□□ -1.88
SCN1A-201ENST00000303395 KRTAP16-1A8MUX0 517 aa3.31□□□□□ -1.88
SCN1A-201ENST00000303395 TEX15Q9BXT5 2789 aa3.31□□□□□ -1.88
SCN1A-201ENST00000303395 CHD6Q8TD26 2715 aa3.31□□□□□ -1.88
SCN1A-201ENST00000303395 ROMO1P60602 79 aa3.31□□□□□ -1.88
SCN1A-201ENST00000303395 GCN1Q92616 2671 aaKnown RBP3.31□□□□□ -1.88
SCN1A-201ENST00000303395 Q5VSD8 79 aa3.3□□□□□ -1.88
SCN1A-201ENST00000303395 FLNAP21333 2647 aaKnown RBP3.29□□□□□ -1.88
SCN1A-201ENST00000303395 A0A087WTM6 91 aa3.29□□□□□ -1.88
SCN1A-201ENST00000303395 A0A1W2PNN7 141 aa3.29□□□□□ -1.88
SCN1A-201ENST00000303395 KRTAP4-16G5E9R7 235 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-201ENST00000303395 A6NN06 94 aa3.28□□□□□ -1.88
SCN1A-201ENST00000303395 C20orf166-AS1Q96NR2 134 aa3.27□□□□□ -1.89
SCN1A-201ENST00000303395 M0QZ58 72 aa3.26□□□□□ -1.89
SCN1A-201ENST00000303395 SETXQ7Z333 2677 aaKnown RBP3.26□□□□□ -1.89
SCN1A-201ENST00000303395 KRTAP10-9P60411 292 aa3.26□□□□□ -1.89
SCN1A-201ENST00000303395 PLAC8Q9NZF1 115 aa3.26□□□□□ -1.89
SCN1A-201ENST00000303395 P0C880 135 aa3.25□□□□□ -1.89
SCN1A-201ENST00000303395 RPL37P61927 97 aaKnown RBP3.25□□□□□ -1.89
SCN1A-201ENST00000303395 OXTP01178 125 aa3.24□□□□□ -1.89
SCN1A-201ENST00000303395 KRTAP24-1Q3LI83 254 aa3.23□□□□□ -1.89
SCN1A-201ENST00000303395 EP400Q96L91 3159 aa3.22□□□□□ -1.89
SCN1A-201ENST00000303395 KRTAP26-1Q6PEX3 210 aa3.21□□□□□ -1.89
SCN1A-201ENST00000303395 CENPFP49454 3210 aa3.21□□□□□ -1.9
SCN1A-201ENST00000303395 CYSTM1Q9H1C7 97 aa3.19□□□□□ -1.9
SCN1A-201ENST00000303395 K7EIL1 84 aa3.19□□□□□ -1.9
SCN1A-201ENST00000303395 UTP20O75691 2785 aaKnown RBP3.19□□□□□ -1.9
SCN1A-201ENST00000303395 Q5W150 140 aa3.18□□□□□ -1.9
SCN1A-201ENST00000303395 ZNF292O60281 2723 aa3.17□□□□□ -1.9
SCN1A-201ENST00000303395 NDUFAF8A1L188 74 aa3.17□□□□□ -1.9
SCN1A-201ENST00000303395 ADM2Q7Z4H4 148 aa3.16□□□□□ -1.9
SCN1A-201ENST00000303395 PP632Q6XCG6 107 aa3.16□□□□□ -1.9
SCN1A-201ENST00000303395 Q8NDZ9 215 aa3.16□□□□□ -1.9
SCN1A-201ENST00000303395 GOLGB1Q14789 3259 aaKnown RBP3.15□□□□□ -1.9
SCN1A-201ENST00000303395 A0A0G2JQZ4 141 aa3.15□□□□□ -1.91
SCN1A-201ENST00000303395 APCP25054 2843 aa3.15□□□□□ -1.91
SCN1A-201ENST00000303395 PRAC1Q96KF2 57 aa3.15□□□□□ -1.91
SCN1A-201ENST00000303395 KRTAP25-1Q3LHN0 102 aa3.13□□□□□ -1.91
SCN1A-201ENST00000303395 CASC10Q5T4H9 136 aa3.13□□□□□ -1.91
SCN1A-201ENST00000303395 KRTAP10-11P60412 298 aa3.13□□□□□ -1.91
SCN1A-201ENST00000303395 KRTAP1-3Q8IUG1 177 aa3.12□□□□□ -1.91
SCN1A-201ENST00000303395 KRTAP1-1Q07627 177 aa3.12□□□□□ -1.91
SCN1A-201ENST00000303395 KRTAP13-1Q8IUC0 172 aa3.11□□□□□ -1.91
SCN1A-201ENST00000303395 TNP1P09430 55 aa3.11□□□□□ -1.91
SCN1A-201ENST00000303395 CEP350Q5VT06 3117 aa3.1□□□□□ -1.91
SCN1A-201ENST00000303395 SRCAPQ6ZRS2 3230 aa3.1□□□□□ -1.91
SCN1A-201ENST00000303395 PANO1I0J062 215 aa3.1□□□□□ -1.91
SCN1A-201ENST00000303395 C10orf95Q9H7T3 257 aa3.1□□□□□ -1.91
SCN1A-201ENST00000303395 UTRNP46939 3433 aa3.08□□□□□ -1.92
SCN1A-201ENST00000303395 A8MUU9 505 aa3.07□□□□□ -1.92
SCN1A-201ENST00000303395 NIPBLQ6KC79 2804 aaeCLIP3.06□□□□□ -1.92
SCN1A-201ENST00000303395 TENM3Q9P273 2699 aa3.05□□□□□ -1.92
SCN1A-201ENST00000303395 MAP1AP78559 2803 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-201ENST00000303395 TRIOO75962 3097 aa3.03□□□□□ -1.92
SCN1A-201ENST00000303395 PRO2289Q9P1D8 64 aa3.02□□□□□ -1.93
SCN1A-201ENST00000303395 UBR5O95071 2799 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-201ENST00000303395 CHD9Q3L8U1 2897 aa3.01□□□□□ -1.93
SCN1A-201ENST00000303395 KRTAP10-3P60369 221 aa3□□□□□ -1.93
SCN1A-201ENST00000303395 KRTAP11-1Q8IUC1 163 aa3□□□□□ -1.93
SCN1A-201ENST00000303395 DSPP15924 2871 aaKnown RBP2.99□□□□□ -1.93
SCN1A-201ENST00000303395 TNRC18O15417 2968 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-201ENST00000303395 LAMA2P24043 3122 aaKnown RBP2.99□□□□□ -1.93
SCN1A-201ENST00000303395 FLNCQ14315 2725 aa2.99□□□□□ -1.93
SCN1A-201ENST00000303395 TRANK1O15050 2925 aa2.98□□□□□ -1.93
SCN1A-201ENST00000303395 PCNTO95613 3336 aa2.98□□□□□ -1.93
SCN1A-201ENST00000303395 Q6ZRN7 208 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-201ENST00000303395 TENM1Q9UKZ4 2725 aa2.97□□□□□ -1.93
SCN1A-201ENST00000303395 KRTAP10-8P60410 259 aa2.96□□□□□ -1.94
SCN1A-201ENST00000303395 NBEAL2Q6ZNJ1 2754 aa2.95□□□□□ -1.94
SCN1A-201ENST00000303395 DNAH12Q6ZR08 3092 aa2.94□□□□□ -1.94
SCN1A-201ENST00000303395 H0YAA0 97 aa2.94□□□□□ -1.94
SCN1A-201ENST00000303395 C5orf42Q9H799 3197 aa2.93□□□□□ -1.94
SCN1A-201ENST00000303395 KRTAP13-3Q3SY46 172 aa2.93□□□□□ -1.94
SCN1A-201ENST00000303395 KRTAP21-3Q3LHN1 58 aa2.93□□□□□ -1.94
SCN1A-201ENST00000303395 A0A0C4DFX4 3053 aa2.92□□□□□ -1.94
SCN1A-201ENST00000303395 NF1P21359 2839 aa2.91□□□□□ -1.94
SCN1A-201ENST00000303395 CRYBG3Q68DQ2 2970 aa2.91□□□□□ -1.94
SCN1A-201ENST00000303395 KALRNO60229 2985 aa2.9□□□□□ -1.94
SCN1A-201ENST00000303395 ITPR1Q14643 2758 aa2.9□□□□□ -1.94
SCN1A-201ENST00000303395 KRTAP1-5Q9BYS1 174 aa2.9□□□□□ -1.95
SCN1A-201ENST00000303395 KRTAP7-1Q8IUC3 87 aa2.89□□□□□ -1.95
SCN1A-201ENST00000303395 LRBAP50851 2863 aa2.88□□□□□ -1.95
SCN1A-201ENST00000303395 KRTAP10-1P60331 282 aa2.87□□□□□ -1.95
SCN1A-201ENST00000303395 CFAP54Q96N23 3096 aa2.87□□□□□ -1.95
SCN1A-201ENST00000303395 BRCA2P51587 3418 aa2.87□□□□□ -1.95
SCN1A-201ENST00000303395 A8MU10 97 aa2.87□□□□□ -1.95
SCN1A-201ENST00000303395 KRTAP23-1A1A580 65 aa2.86□□□□□ -1.95
SCN1A-201ENST00000303395 HIVEP1P15822 2718 aa2.86□□□□□ -1.95
SCN1A-201ENST00000303395 PDZD2O15018 2839 aa2.86□□□□□ -1.95
SCN1A-201ENST00000303395 FRYQ5TBA9 3013 aa2.85□□□□□ -1.95
SCN1A-201ENST00000303395 FRYLO94915 3013 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms