RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 VAMP3Q15836 100 aa7.93□□□□□ -1.14
HMGN3-201ENST00000275036 KRTAP9-2Q9BYQ4 174 aa7.92□□□□□ -1.14
HMGN3-201ENST00000275036 PAM16Q9Y3D7 125 aa7.92□□□□□ -1.14
HMGN3-201ENST00000275036 hADV29S1A0JD25 119 aa7.91□□□□□ -1.14
HMGN3-201ENST00000275036 SEC61BP60468 96 aaKnown RBP7.91□□□□□ -1.14
HMGN3-201ENST00000275036 SPATA45Q537H7 98 aa7.91□□□□□ -1.14
HMGN3-201ENST00000275036 Q6ZQY7 126 aa7.91□□□□□ -1.14
HMGN3-201ENST00000275036 Q5XG85 94 aa7.9□□□□□ -1.14
HMGN3-201ENST00000275036 CFC1BP0CG36 223 aa7.89□□□□□ -1.15
HMGN3-201ENST00000275036 CFC1P0CG37 223 aa7.89□□□□□ -1.15
HMGN3-201ENST00000275036 C2orf91Q6ZV80 131 aa7.89□□□□□ -1.15
HMGN3-201ENST00000275036 HIGD1BQ9P298 99 aa7.89□□□□□ -1.15
HMGN3-201ENST00000275036 C9orf92A6NGG3 77 aa7.88□□□□□ -1.15
HMGN3-201ENST00000275036 C1orf195Q5TG92 126 aa7.88□□□□□ -1.15
HMGN3-201ENST00000275036 VAMP8Q9BV40 100 aa7.87□□□□□ -1.15
HMGN3-201ENST00000275036 BVES-AS1Q5T3Y7 98 aa7.86□□□□□ -1.15
HMGN3-201ENST00000275036 F8WEM9 126 aa7.85□□□□□ -1.15
HMGN3-201ENST00000275036 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.85□□□□□ -1.15
HMGN3-201ENST00000275036 IGLV8-61A0A075B6I0 122 aa7.84□□□□□ -1.15
HMGN3-201ENST00000275036 A0A0B4J2C4 111 aa7.83□□□□□ -1.16
HMGN3-201ENST00000275036 IGFL1Q6UW32 110 aa7.83□□□□□ -1.16
HMGN3-201ENST00000275036 RAB37Q96AX2 223 aa7.83□□□□□ -1.16
HMGN3-201ENST00000275036 OCIAD2Q56VL3 154 aa7.82□□□□□ -1.16
HMGN3-201ENST00000275036 FAM218AQ96MZ4 157 aa7.82□□□□□ -1.16
HMGN3-201ENST00000275036 Q6JHZ5 121 aa7.81□□□□□ -1.16
HMGN3-201ENST00000275036 CEND1Q8N111 149 aa7.81□□□□□ -1.16
HMGN3-201ENST00000275036 CLEC2BQ92478 149 aa7.81□□□□□ -1.16
HMGN3-201ENST00000275036 KRTAP19-2Q3LHN2 52 aa7.8□□□□□ -1.16
HMGN3-201ENST00000275036 PCOTHQ58A44 107 aa7.8□□□□□ -1.16
HMGN3-201ENST00000275036 PYY3Q5JQD4 70 aa7.8□□□□□ -1.16
HMGN3-201ENST00000275036 TCL1BO95988 128 aa7.79□□□□□ -1.16
HMGN3-201ENST00000275036 FXYD2P54710 66 aa7.79□□□□□ -1.16
HMGN3-201ENST00000275036 PPDPFLQ8WWR9 84 aa7.79□□□□□ -1.16
HMGN3-201ENST00000275036 TRBV7-7A0A0K0K1E9 115 aa7.78□□□□□ -1.16
HMGN3-201ENST00000275036 H3BUT2 72 aa7.78□□□□□ -1.16
HMGN3-201ENST00000275036 H0YGX0 51 aa7.77□□□□□ -1.17
HMGN3-201ENST00000275036 SNHG12Q9BXW3 62 aa7.77□□□□□ -1.17
HMGN3-201ENST00000275036 PRO1854Q9UHT4 67 aa7.76□□□□□ -1.17
HMGN3-201ENST00000275036 TMEM238LA0A1B0GVL6 79 aa7.73□□□□□ -1.17
HMGN3-201ENST00000275036 A6NJY4 79 aa7.73□□□□□ -1.17
HMGN3-201ENST00000275036 TMA7Q9Y2S6 64 aaKnown RBP7.73□□□□□ -1.17
HMGN3-201ENST00000275036 TRIAP1O43715 76 aa7.72□□□□□ -1.17
HMGN3-201ENST00000275036 NDUFV3P56181 108 aaKnown RBP7.71□□□□□ -1.18
HMGN3-201ENST00000275036 RPL37P61927 97 aaKnown RBP7.71□□□□□ -1.18
HMGN3-201ENST00000275036 K7ERJ3 54 aa7.7□□□□□ -1.18
HMGN3-201ENST00000275036 SNCGO76070 127 aa7.7□□□□□ -1.18
HMGN3-201ENST00000275036 HSD52Q0P140 79 aa7.7□□□□□ -1.18
HMGN3-201ENST00000275036 A0A1B0GX51 115 aa7.69□□□□□ -1.18
HMGN3-201ENST00000275036 Q6Q795 121 aa7.69□□□□□ -1.18
HMGN3-201ENST00000275036 MT1HP80294 61 aa7.68□□□□□ -1.18
HMGN3-201ENST00000275036 KRTAP9-6A0A140TA67 174 aa7.66□□□□□ -1.18
HMGN3-201ENST00000275036 H3BMG7 143 aa7.66□□□□□ -1.18
HMGN3-201ENST00000275036 LST1O00453 97 aa7.66□□□□□ -1.18
HMGN3-201ENST00000275036 FABP2P12104 132 aa7.66□□□□□ -1.18
HMGN3-201ENST00000275036 TEN1Q86WV5 123 aa7.66□□□□□ -1.18
HMGN3-201ENST00000275036 UQCR10Q9UDW1 63 aa7.65□□□□□ -1.18
HMGN3-201ENST00000275036 OBSCN-AS1Q96MR7 158 aa7.64□□□□□ -1.19
HMGN3-201ENST00000275036 A0A087WSZ3 146 aa7.63□□□□□ -1.19
HMGN3-201ENST00000275036 FLGP20930 4061 aaPredicted RBP7.62□□□□□ -1.19
HMGN3-201ENST00000275036 A0A1W2PNM2 257 aa7.62□□□□□ -1.19
HMGN3-201ENST00000275036 PSMB2P49721 201 aa7.62□□□□□ -1.19
HMGN3-201ENST00000275036 Q96NJ1 140 aa7.62□□□□□ -1.19
HMGN3-201ENST00000275036 SS18L2Q9UHA2 77 aa7.62□□□□□ -1.19
HMGN3-201ENST00000275036 FSIP2Q5CZC0 6907 aa7.62□□□□□ -1.19
HMGN3-201ENST00000275036 GHRHP01286 108 aa7.61□□□□□ -1.19
HMGN3-201ENST00000275036 ORMDL1Q9P0S3 153 aa7.6□□□□□ -1.19
HMGN3-201ENST00000275036 A0A1B0GV72 72 aa7.59□□□□□ -1.19
HMGN3-201ENST00000275036 DNAL4O96015 105 aa7.59□□□□□ -1.19
HMGN3-201ENST00000275036 Q75L30 129 aa7.58□□□□□ -1.2
HMGN3-201ENST00000275036 COX6CP09669 75 aa7.57□□□□□ -1.2
HMGN3-201ENST00000275036 KRTAP4-8Q9BYQ9 185 aa7.56□□□□□ -1.2
HMGN3-201ENST00000275036 TMEM256-PLSCR3K7ERE1 68 aa7.55□□□□□ -1.2
HMGN3-201ENST00000275036 ANKRD29Q8N6D5 301 aa7.55□□□□□ -1.2
HMGN3-201ENST00000275036 H3BQ85 93 aa7.54□□□□□ -1.2
HMGN3-201ENST00000275036 TRBV7-4A0A0J9YYF1 115 aa7.53□□□□□ -1.2
HMGN3-201ENST00000275036 KRTAP10-6P60371 365 aaPredicted RBP7.53□□□□□ -1.2
HMGN3-201ENST00000275036 ATP11AUNQ6ZP68 121 aa7.53□□□□□ -1.2
HMGN3-201ENST00000275036 TRACP01848 142 aa7.52□□□□□ -1.21
HMGN3-201ENST00000275036 C20orf166-AS1Q96NR2 134 aa7.52□□□□□ -1.21
HMGN3-201ENST00000275036 A8MUU9 505 aa7.51□□□□□ -1.21
HMGN3-201ENST00000275036 DSCR10P59022 87 aa7.51□□□□□ -1.21
HMGN3-201ENST00000275036 UBE2V1Q13404 147 aa7.51□□□□□ -1.21
HMGN3-201ENST00000275036 SCGB1C2P0DMR2 95 aa7.5□□□□□ -1.21
HMGN3-201ENST00000275036 SIGMAR1Q99720 223 aa7.5□□□□□ -1.21
HMGN3-201ENST00000275036 CCKP06307 115 aa7.49□□□□□ -1.21
HMGN3-201ENST00000275036 IGKV4-1P06312 121 aa7.48□□□□□ -1.21
HMGN3-201ENST00000275036 COX6B2Q6YFQ2 88 aa7.48□□□□□ -1.21
HMGN3-201ENST00000275036 LINC00472Q9H8W2 130 aa7.48□□□□□ -1.21
HMGN3-201ENST00000275036 DEFB116Q30KQ4 102 aa7.47□□□□□ -1.21
HMGN3-201ENST00000275036 KRTAP16-1A8MUX0 517 aa7.45□□□□□ -1.22
HMGN3-201ENST00000275036 NOTCH2NLQ7Z3S9 236 aa7.45□□□□□ -1.22
HMGN3-201ENST00000275036 NAA38Q9BRA0 125 aaKnown RBP7.45□□□□□ -1.22
HMGN3-201ENST00000275036 CRCT1Q9UGL9 99 aa7.45□□□□□ -1.22
HMGN3-201ENST00000275036 M0R2T5 61 aa7.44□□□□□ -1.22
HMGN3-201ENST00000275036 BAALC-AS2P0C853 105 aa7.44□□□□□ -1.22
HMGN3-201ENST00000275036 LINC00313P59037 77 aa7.44□□□□□ -1.22
HMGN3-201ENST00000275036 RBM3P98179 157 aaKnown RBP7.44□□□□□ -1.22
HMGN3-201ENST00000275036 M0R143 59 aa7.43□□□□□ -1.22
HMGN3-201ENST00000275036 VPS25Q9BRG1 176 aa7.43□□□□□ -1.22
HMGN3-201ENST00000275036 SMIM6P0DI80 62 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms