RNA–Protein interactions for RNA: ENST00000258781.10

CCM2-201, Transcript of CCM2 scaffold protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCM2, Length 1,894 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-201ENST00000258781 SMIM29Q86T20 159 aa17.12■□□□□ 0.33
CCM2-201ENST00000258781 IGKV3D-7A0A0C4DH55 119 aa17.11■□□□□ 0.33
CCM2-201ENST00000258781 KRTAP13-1Q8IUC0 172 aa17.1■□□□□ 0.33
CCM2-201ENST00000258781 LINC00336Q6ZUF6 198 aa17.08■□□□□ 0.33
CCM2-201ENST00000258781 Q6ZVQ6 151 aa17.07■□□□□ 0.32
CCM2-201ENST00000258781 C1orf137Q5JT78 98 aa17.07■□□□□ 0.32
CCM2-201ENST00000258781 F8WEM9 126 aa17.05■□□□□ 0.32
CCM2-201ENST00000258781 SPRR1BP22528 89 aa17.05■□□□□ 0.32
CCM2-201ENST00000258781 A0A1B0GW54 56 aa17.04■□□□□ 0.32
CCM2-201ENST00000258781 IGLV8-61A0A075B6I0 122 aa17■□□□□ 0.31
CCM2-201ENST00000258781 FAM236AA0A1B0GUQ0 79 aa16.99■□□□□ 0.31
CCM2-201ENST00000258781 FAM236BA0A1B0GV22 79 aa16.99■□□□□ 0.31
CCM2-201ENST00000258781 A0A1B0GVY2 172 aa16.99■□□□□ 0.31
CCM2-201ENST00000258781 A0A1W2PNM2 257 aa16.99■□□□□ 0.31
CCM2-201ENST00000258781 Q8NBF4 154 aa16.99■□□□□ 0.31
CCM2-201ENST00000258781 ANAPC13Q9BS18 74 aa16.99■□□□□ 0.31
CCM2-201ENST00000258781 LRP1BQ9NZR2 4599 aa16.98■□□□□ 0.31
CCM2-201ENST00000258781 KRTAP10-1P60331 282 aa16.97■□□□□ 0.31
CCM2-201ENST00000258781 PSORS1C2Q9UIG4 136 aa16.97■□□□□ 0.31
CCM2-201ENST00000258781 FAM30AQ9NZY2 134 aa16.96■□□□□ 0.31
CCM2-201ENST00000258781 CXCL6P80162 114 aa16.95■□□□□ 0.3
CCM2-201ENST00000258781 HAMPP81172 84 aa16.95■□□□□ 0.3
CCM2-201ENST00000258781 SPRR4Q96PI1 79 aa16.94■□□□□ 0.3
CCM2-201ENST00000258781 DYNC1H1Q14204 4646 aaKnown RBP16.93■□□□□ 0.3
CCM2-201ENST00000258781 HIST1H4AP62805 103 aaKnown RBP16.92■□□□□ 0.3
CCM2-201ENST00000258781 IGFL1Q6UW32 110 aa16.9■□□□□ 0.3
CCM2-201ENST00000258781 NREPQ16612 68 aa16.89■□□□□ 0.29
CCM2-201ENST00000258781 Q6ZSA8 131 aa16.89■□□□□ 0.29
CCM2-201ENST00000258781 A0A087WVE0 104 aa16.87■□□□□ 0.29
CCM2-201ENST00000258781 CRYGAP11844 174 aa16.86■□□□□ 0.29
CCM2-201ENST00000258781 ZNF706Q9Y5V0 76 aaPredicted RBP16.85■□□□□ 0.29
CCM2-201ENST00000258781 ZNF861PO60384 105 aa16.84■□□□□ 0.29
CCM2-201ENST00000258781 CIRBP-AS1Q8TBR5 109 aa16.84■□□□□ 0.29
CCM2-201ENST00000258781 LINC00483Q53H64 154 aa16.82■□□□□ 0.28
CCM2-201ENST00000258781 SCXQ7RTU7 201 aa16.82■□□□□ 0.28
CCM2-201ENST00000258781 SRRM2Q9UQ35 2752 aaKnown RBP16.8■□□□□ 0.28
CCM2-201ENST00000258781 ATOX1O00244 68 aa16.78■□□□□ 0.28
CCM2-201ENST00000258781 A0A0G2JQZ4 141 aa16.78■□□□□ 0.28
CCM2-201ENST00000258781 IGLV7-43P04211 117 aa16.77■□□□□ 0.27
CCM2-201ENST00000258781 APOBP04114 4563 aaKnown RBP16.75■□□□□ 0.27
CCM2-201ENST00000258781 BPY2O14599 106 aa16.75■□□□□ 0.27
CCM2-201ENST00000258781 RPL37AP61513 92 aaKnown RBP16.68■□□□□ 0.26
CCM2-201ENST00000258781 A0A087WSZ3 146 aa16.65■□□□□ 0.26
CCM2-201ENST00000258781 VPS13BQ7Z7G8 4022 aa16.64■□□□□ 0.25
CCM2-201ENST00000258781 IGLV9-49A0A0B4J1Y8 123 aa16.64■□□□□ 0.25
CCM2-201ENST00000258781 IGKV4-1P06312 121 aa16.64■□□□□ 0.25
CCM2-201ENST00000258781 C9orf153Q5TBE3 101 aa16.63■□□□□ 0.25
CCM2-201ENST00000258781 CCDC179H3BU77 68 aa16.62■□□□□ 0.25
CCM2-201ENST00000258781 Q8N9L7 120 aa16.6■□□□□ 0.25
CCM2-201ENST00000258781 EPPK1P58107 5090 aaKnown RBP16.59■□□□□ 0.25
CCM2-201ENST00000258781 COX7CP15954 63 aa16.57■□□□□ 0.24
CCM2-201ENST00000258781 SERP2Q8N6R1 65 aa16.56■□□□□ 0.24
CCM2-201ENST00000258781 UQCRQO14949 82 aa16.56■□□□□ 0.24
CCM2-201ENST00000258781 DSCR10P59022 87 aa16.54■□□□□ 0.24
CCM2-201ENST00000258781 ANAPC11Q9NYG5 84 aa16.54■□□□□ 0.24
CCM2-201ENST00000258781 MOBPQ13875 183 aa16.53■□□□□ 0.24
CCM2-201ENST00000258781 FAT1Q14517 4588 aa16.51■□□□□ 0.23
CCM2-201ENST00000258781 SMIM20Q8N5G0 67 aa16.5■□□□□ 0.23
CCM2-201ENST00000258781 LINC00472Q9H8W2 130 aa16.45■□□□□ 0.22
CCM2-201ENST00000258781 K7EQZ3 153 aa16.44■□□□□ 0.22
CCM2-201ENST00000258781 SMR3BP02814 79 aaPredicted RBP16.44■□□□□ 0.22
CCM2-201ENST00000258781 HSPG2P98160 4391 aa16.43■□□□□ 0.22
CCM2-201ENST00000258781 TRAV7A0A075B6U4 112 aa16.43■□□□□ 0.22
CCM2-201ENST00000258781 DEFB116Q30KQ4 102 aa16.42■□□□□ 0.22
CCM2-201ENST00000258781 SS18L2Q9UHA2 77 aa16.4■□□□□ 0.22
CCM2-201ENST00000258781 RYR1P21817 5038 aa16.37■□□□□ 0.21
CCM2-201ENST00000258781 HRCT1Q6UXD1 115 aa16.37■□□□□ 0.21
CCM2-201ENST00000258781 SSBP3-AS1Q7Z2R9 100 aa16.37■□□□□ 0.21
CCM2-201ENST00000258781 J3KT08 172 aa16.36■□□□□ 0.21
CCM2-201ENST00000258781 FAM229BQ4G0N7 80 aa16.35■□□□□ 0.21
CCM2-201ENST00000258781 KIAA1109Q2LD37 5005 aa16.33■□□□□ 0.2
CCM2-201ENST00000258781 A8MWP4 228 aa16.32■□□□□ 0.2
CCM2-201ENST00000258781 CD164Q04900 197 aa16.32■□□□□ 0.2
CCM2-201ENST00000258781 Q96NJ1 140 aa16.31■□□□□ 0.2
CCM2-201ENST00000258781 HCG22E2RYF7 251 aa16.3■□□□□ 0.2
CCM2-201ENST00000258781 PRR15Q8IV56 129 aa16.29■□□□□ 0.2
CCM2-201ENST00000258781 CDK2AP2O75956 126 aa16.28■□□□□ 0.2
CCM2-201ENST00000258781 OCR1Q9BZK8 76 aa16.27■□□□□ 0.19
CCM2-201ENST00000258781 A0A087X002 238 aa16.25■□□□□ 0.19
CCM2-201ENST00000258781 KRTAP1-4P0C5Y4 121 aa16.25■□□□□ 0.19
CCM2-201ENST00000258781 KRTAP10-4P60372 401 aaPredicted RBP16.25■□□□□ 0.19
CCM2-201ENST00000258781 KRTAP13-2Q52LG2 175 aa16.24■□□□□ 0.19
CCM2-201ENST00000258781 NDUFB1O75438 58 aa16.2■□□□□ 0.18
CCM2-201ENST00000258781 SPINK6Q6UWN8 80 aa16.2■□□□□ 0.18
CCM2-201ENST00000258781 C20orf197Q8N268 126 aa16.19■□□□□ 0.18
CCM2-201ENST00000258781 KRTAP29-1A8MX34 341 aaPredicted RBP16.16■□□□□ 0.18
CCM2-201ENST00000258781 WFDC13Q8IUB5 93 aa16.15■□□□□ 0.18
CCM2-201ENST00000258781 CYSTM1Q9H1C7 97 aa16.15■□□□□ 0.18
CCM2-201ENST00000258781 KRTAP17-1Q9BYP8 105 aa16.13■□□□□ 0.17
CCM2-201ENST00000258781 ASB16-AS1Q495Z4 193 aa16.12■□□□□ 0.17
CCM2-201ENST00000258781 KLKP1Q107X0 134 aa16.12■□□□□ 0.17
CCM2-201ENST00000258781 CASC2Q6XLA1 102 aa16.12■□□□□ 0.17
CCM2-201ENST00000258781 PLA2G1BP04054 148 aaKnown RBP16.11■□□□□ 0.17
CCM2-201ENST00000258781 PKHD1L1Q86WI1 4243 aa16.1■□□□□ 0.17
CCM2-201ENST00000258781 MMP24-AS1A0A0U1RRL7 71 aa16.08■□□□□ 0.17
CCM2-201ENST00000258781 FAM229AH3BQW9 127 aa16.08■□□□□ 0.16
CCM2-201ENST00000258781 Q5VSD8 79 aa16.07■□□□□ 0.16
CCM2-201ENST00000258781 Q5XG85 94 aa16.07■□□□□ 0.16
CCM2-201ENST00000258781 A0A1B0GVX0 72 aa16.06■□□□□ 0.16
CCM2-201ENST00000258781 TMEM254Q8TBM7 123 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms