RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 LYRM7Q5U5X0 104 aa12.66□□□□□ -0.38
CLN3-250ENST00000636839 KRTAP11-1Q8IUC1 163 aa12.66□□□□□ -0.38
CLN3-250ENST00000636839 ZNF73O43830 326 aaPredicted RBP12.66□□□□□ -0.38
CLN3-250ENST00000636839 LINC00474Q9P2X8 69 aa12.66□□□□□ -0.38
CLN3-250ENST00000636839 TRBV20-1A0A075B6N2 111 aa12.65□□□□□ -0.38
CLN3-250ENST00000636839 A0A087WYN8 130 aa12.65□□□□□ -0.38
CLN3-250ENST00000636839 FAM30AQ9NZY2 134 aa12.64□□□□□ -0.39
CLN3-250ENST00000636839 PKIGQ9Y2B9 76 aa12.64□□□□□ -0.39
CLN3-250ENST00000636839 LST1O00453 97 aa12.64□□□□□ -0.39
CLN3-250ENST00000636839 KCNQ1DNQ9H478 68 aa12.64□□□□□ -0.39
CLN3-250ENST00000636839 RYR3Q15413 4870 aa12.64□□□□□ -0.39
CLN3-250ENST00000636839 KRTAP10-1P60331 282 aa12.62□□□□□ -0.39
CLN3-250ENST00000636839 ATXN8Q156A1 80 aa12.62□□□□□ -0.39
CLN3-250ENST00000636839 DIRC1Q969H9 104 aa12.61□□□□□ -0.39
CLN3-250ENST00000636839 H0YGX0 51 aa12.59□□□□□ -0.39
CLN3-250ENST00000636839 PRO0461Q9UI25 63 aa12.59□□□□□ -0.39
CLN3-250ENST00000636839 PKHD1P08F94 4074 aa12.59□□□□□ -0.39
CLN3-250ENST00000636839 DNAH8Q96JB1 4490 aa12.59□□□□□ -0.39
CLN3-250ENST00000636839 C9JAW5 83 aa12.58□□□□□ -0.4
CLN3-250ENST00000636839 HAMPP81172 84 aa12.58□□□□□ -0.4
CLN3-250ENST00000636839 LINC00336Q6ZUF6 198 aa12.58□□□□□ -0.4
CLN3-250ENST00000636839 SCGB1A1P11684 91 aa12.57□□□□□ -0.4
CLN3-250ENST00000636839 EPM2AB3EWF7 344 aa12.57□□□□□ -0.4
CLN3-250ENST00000636839 SMCPP49901 116 aaPredicted RBP12.57□□□□□ -0.4
CLN3-250ENST00000636839 UBE2BP63146 152 aa12.56□□□□□ -0.4
CLN3-250ENST00000636839 A0A1B0GVY2 172 aa12.55□□□□□ -0.4
CLN3-250ENST00000636839 KRTAP4-16G5E9R7 235 aaPredicted RBP12.55□□□□□ -0.4
CLN3-250ENST00000636839 COX7BP24311 80 aa12.55□□□□□ -0.4
CLN3-250ENST00000636839 LINC00575Q6W349 94 aa12.55□□□□□ -0.4
CLN3-250ENST00000636839 PRYO14603 147 aa12.55□□□□□ -0.4
CLN3-250ENST00000636839 ELOF1P60002 83 aaKnown RBP12.55□□□□□ -0.4
CLN3-250ENST00000636839 PLAC8Q9NZF1 115 aa12.55□□□□□ -0.4
CLN3-250ENST00000636839 SPRR1AP35321 89 aa12.54□□□□□ -0.4
CLN3-250ENST00000636839 REG3GQ6UW15 175 aa12.54□□□□□ -0.4
CLN3-250ENST00000636839 TRACP01848 142 aa12.52□□□□□ -0.4
CLN3-250ENST00000636839 LINC00528Q8N1L1 170 aa12.52□□□□□ -0.4
CLN3-250ENST00000636839 CIRBP-AS1Q8TBR5 109 aa12.52□□□□□ -0.41
CLN3-250ENST00000636839 TRBV7-6A0A0J9YX20 115 aa12.5□□□□□ -0.41
CLN3-250ENST00000636839 B5MCH6 92 aa12.5□□□□□ -0.41
CLN3-250ENST00000636839 SLC25A20O43772 301 aa12.5□□□□□ -0.41
CLN3-250ENST00000636839 Q6ZSA8 131 aa12.5□□□□□ -0.41
CLN3-250ENST00000636839 ETDCA0A1B0GVM5 59 aa12.49□□□□□ -0.41
CLN3-250ENST00000636839 F8W1H4 67 aa12.49□□□□□ -0.41
CLN3-250ENST00000636839 hADV29S1A0JD25 119 aa12.49□□□□□ -0.41
CLN3-250ENST00000636839 SCXQ7RTU7 201 aa12.49□□□□□ -0.41
CLN3-250ENST00000636839 SVIPQ8NHG7 77 aa12.49□□□□□ -0.41
CLN3-250ENST00000636839 Q9BRP9 147 aa12.49□□□□□ -0.41
CLN3-250ENST00000636839 PRLHP81277 87 aa12.47□□□□□ -0.41
CLN3-250ENST00000636839 Q6ZRX8 168 aa12.47□□□□□ -0.41
CLN3-250ENST00000636839 LRP1BQ9NZR2 4599 aa12.47□□□□□ -0.41
CLN3-250ENST00000636839 DNAL4O96015 105 aa12.47□□□□□ -0.41
CLN3-250ENST00000636839 FAM19A1Q7Z5A9 133 aa12.46□□□□□ -0.41
CLN3-250ENST00000636839 DYNC1H1Q14204 4646 aaKnown RBP12.46□□□□□ -0.41
CLN3-250ENST00000636839 BAALC-AS2P0C853 105 aa12.45□□□□□ -0.42
CLN3-250ENST00000636839 ANKRD29Q8N6D5 301 aa12.45□□□□□ -0.42
CLN3-250ENST00000636839 ETDBQ3ZM63 59 aa12.44□□□□□ -0.42
CLN3-250ENST00000636839 ERC2-IT1O76042 136 aa12.44□□□□□ -0.42
CLN3-250ENST00000636839 Q6ZQY7 126 aa12.44□□□□□ -0.42
CLN3-250ENST00000636839 A0A1B0GX51 115 aa12.43□□□□□ -0.42
CLN3-250ENST00000636839 J3QR89 54 aa12.43□□□□□ -0.42
CLN3-250ENST00000636839 SRRM2Q9UQ35 2752 aaKnown RBP12.43□□□□□ -0.42
CLN3-250ENST00000636839 PSORS1C2Q9UIG4 136 aa12.42□□□□□ -0.42
CLN3-250ENST00000636839 SMCR5Q8TEV8 140 aa12.41□□□□□ -0.42
CLN3-250ENST00000636839 A0A1B0GV72 72 aa12.4□□□□□ -0.42
CLN3-250ENST00000636839 SIGMAR1Q99720 223 aa12.4□□□□□ -0.42
CLN3-250ENST00000636839 ST20-AS1Q8NBB2 130 aa12.39□□□□□ -0.43
CLN3-250ENST00000636839 ORMDL1Q9P0S3 153 aa12.39□□□□□ -0.43
CLN3-250ENST00000636839 H3BT86 120 aa12.38□□□□□ -0.43
CLN3-250ENST00000636839 BCE1O60756 84 aa12.38□□□□□ -0.43
CLN3-250ENST00000636839 SNCGO76070 127 aa12.37□□□□□ -0.43
CLN3-250ENST00000636839 HIGD2AQ9BW72 106 aa12.37□□□□□ -0.43
CLN3-250ENST00000636839 INAFM2P0DMQ5 153 aa12.37□□□□□ -0.43
CLN3-250ENST00000636839 DHRS4-AS1Q9P1J3 65 aa12.37□□□□□ -0.43
CLN3-250ENST00000636839 DEFB105AQ8NG35 78 aa12.36□□□□□ -0.43
CLN3-250ENST00000636839 LINC01600Q96MT4 127 aa12.36□□□□□ -0.43
CLN3-250ENST00000636839 UBE2AP49459 152 aa12.35□□□□□ -0.43
CLN3-250ENST00000636839 C1orf137Q5JT78 98 aa12.35□□□□□ -0.43
CLN3-250ENST00000636839 TEX49A0A1B0GTD5 131 aa12.35□□□□□ -0.43
CLN3-250ENST00000636839 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.35□□□□□ -0.43
CLN3-250ENST00000636839 KRTAP13-1Q8IUC0 172 aa12.34□□□□□ -0.43
CLN3-250ENST00000636839 TEN1Q86WV5 123 aa12.33□□□□□ -0.43
CLN3-250ENST00000636839 XGP55808 180 aa12.32□□□□□ -0.44
CLN3-250ENST00000636839 LINC01547P58512 204 aaPredicted RBP12.32□□□□□ -0.44
CLN3-250ENST00000636839 H0Y9J4 135 aa12.3□□□□□ -0.44
CLN3-250ENST00000636839 TMEM256-PLSCR3K7ERE1 68 aa12.3□□□□□ -0.44
CLN3-250ENST00000636839 Q8N377 158 aa12.3□□□□□ -0.44
CLN3-250ENST00000636839 APOBP04114 4563 aaKnown RBP12.28□□□□□ -0.44
CLN3-250ENST00000636839 C3orf22Q8N5N4 141 aa12.28□□□□□ -0.44
CLN3-250ENST00000636839 SMR3BP02814 79 aaPredicted RBP12.26□□□□□ -0.45
CLN3-250ENST00000636839 VPS13BQ7Z7G8 4022 aa12.24□□□□□ -0.45
CLN3-250ENST00000636839 IGLV7-43P04211 117 aa12.24□□□□□ -0.45
CLN3-250ENST00000636839 IGLV5-48A0A075B6I7 105 aa12.23□□□□□ -0.45
CLN3-250ENST00000636839 PPDPFLQ8WWR9 84 aa12.23□□□□□ -0.45
CLN3-250ENST00000636839 LAMTOR3Q9UHA4 124 aa12.23□□□□□ -0.45
CLN3-250ENST00000636839 ZNF861PO60384 105 aa12.23□□□□□ -0.45
CLN3-250ENST00000636839 OBSCN-AS1Q96MR7 158 aa12.21□□□□□ -0.45
CLN3-250ENST00000636839 C14orf132Q9NPU4 83 aa12.21□□□□□ -0.45
CLN3-250ENST00000636839 GAGE2AQ6NT46 116 aa12.21□□□□□ -0.46
CLN3-250ENST00000636839 NDUFV3P56181 108 aaKnown RBP12.2□□□□□ -0.46
CLN3-250ENST00000636839 EPPK1P58107 5090 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 207.4 ms