RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TRAV10A0A0B4J240 114 aa8.45□□□□□ -1.06
CCDC88A-214ENST00000621814 C3orf84H3BNL1 204 aa8.45□□□□□ -1.06
CCDC88A-214ENST00000621814 C7orf33Q8WU49 177 aa8.45□□□□□ -1.06
CCDC88A-214ENST00000621814 LINC00588Q9Y4M8 146 aa8.45□□□□□ -1.06
CCDC88A-214ENST00000621814 Q8N9L7 120 aa8.45□□□□□ -1.06
CCDC88A-214ENST00000621814 TRBV7-4A0A0J9YYF1 115 aa8.44□□□□□ -1.06
CCDC88A-214ENST00000621814 PDE6GP18545 87 aa8.44□□□□□ -1.06
CCDC88A-214ENST00000621814 FAM19A5Q7Z5A7 132 aaPredicted RBP8.42□□□□□ -1.06
CCDC88A-214ENST00000621814 H3BQ85 93 aa8.41□□□□□ -1.06
CCDC88A-214ENST00000621814 TRBV7-6A0A0J9YX20 115 aa8.41□□□□□ -1.06
CCDC88A-214ENST00000621814 DNAH10OSP0CZ25 163 aa8.41□□□□□ -1.06
CCDC88A-214ENST00000621814 SNURFQ9Y675 71 aa8.4□□□□□ -1.07
CCDC88A-214ENST00000621814 MGAM2Q2M2H8 2515 aa8.39□□□□□ -1.07
CCDC88A-214ENST00000621814 ST20-AS1Q8NBB2 130 aa8.39□□□□□ -1.07
CCDC88A-214ENST00000621814 KCNQ1DNQ9H478 68 aa8.38□□□□□ -1.07
CCDC88A-214ENST00000621814 NREPQ16612 68 aa8.38□□□□□ -1.07
CCDC88A-214ENST00000621814 Q8N377 158 aa8.38□□□□□ -1.07
CCDC88A-214ENST00000621814 ETDCA0A1B0GVM5 59 aa8.38□□□□□ -1.07
CCDC88A-214ENST00000621814 J3KT08 172 aa8.38□□□□□ -1.07
CCDC88A-214ENST00000621814 TMEM258P61165 79 aa8.37□□□□□ -1.07
CCDC88A-214ENST00000621814 CXCL6P80162 114 aa8.37□□□□□ -1.07
CCDC88A-214ENST00000621814 CSMD3Q7Z407 3707 aa8.36□□□□□ -1.07
CCDC88A-214ENST00000621814 IGKV2-24A0A0C4DH68 120 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 UBE2BP63146 152 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 DPH3Q96FX2 82 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 TM2D3Q9BRN9 247 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 CMYA5Q8N3K9 4069 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 BPY2O14599 106 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 Q9BRP9 147 aa8.35□□□□□ -1.07
CCDC88A-214ENST00000621814 RMI2Q96E14 147 aa8.34□□□□□ -1.07
CCDC88A-214ENST00000621814 LYSTQ99698 3801 aa8.34□□□□□ -1.07
CCDC88A-214ENST00000621814 Q6ZRX8 168 aa8.33□□□□□ -1.08
CCDC88A-214ENST00000621814 KRTAP7-1Q8IUC3 87 aa8.33□□□□□ -1.08
CCDC88A-214ENST00000621814 IGLV1-50A0A075B6I6 118 aa8.33□□□□□ -1.08
CCDC88A-214ENST00000621814 TRAV7A0A075B6U4 112 aa8.33□□□□□ -1.08
CCDC88A-214ENST00000621814 K7EIL1 84 aa8.33□□□□□ -1.08
CCDC88A-214ENST00000621814 ERC2-IT1O76042 136 aa8.33□□□□□ -1.08
CCDC88A-214ENST00000621814 A0A0G2JQZ4 141 aa8.32□□□□□ -1.08
CCDC88A-214ENST00000621814 A0A1W2PNN7 141 aa8.32□□□□□ -1.08
CCDC88A-214ENST00000621814 MRPL55Q7Z7F7 128 aaKnown RBP8.32□□□□□ -1.08
CCDC88A-214ENST00000621814 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.31□□□□□ -1.08
CCDC88A-214ENST00000621814 F8WDY8 70 aa8.31□□□□□ -1.08
CCDC88A-214ENST00000621814 DHRS4-AS1Q9P1J3 65 aa8.31□□□□□ -1.08
CCDC88A-214ENST00000621814 PSCAO43653 123 aa8.3□□□□□ -1.08
CCDC88A-214ENST00000621814 OXTP01178 125 aa8.3□□□□□ -1.08
CCDC88A-214ENST00000621814 TLX1NBP0CAT3 122 aa8.3□□□□□ -1.08
CCDC88A-214ENST00000621814 TENM2Q9NT68 2774 aa8.29□□□□□ -1.08
CCDC88A-214ENST00000621814 STAB2Q8WWQ8 2551 aa8.29□□□□□ -1.08
CCDC88A-214ENST00000621814 FUSP35637 526 aaKnown RBP eCLIP8.29□□□□□ -1.082e-9■□□□□ 9.5
CCDC88A-214ENST00000621814 C1orf137Q5JT78 98 aa8.29□□□□□ -1.08
CCDC88A-214ENST00000621814 PRYO14603 147 aa8.28□□□□□ -1.08
CCDC88A-214ENST00000621814 PRLHP81277 87 aa8.27□□□□□ -1.09
CCDC88A-214ENST00000621814 A0A1W2PNM2 257 aa8.27□□□□□ -1.09
CCDC88A-214ENST00000621814 F8WEM9 126 aa8.27□□□□□ -1.09
CCDC88A-214ENST00000621814 KRTAP4-16G5E9R7 235 aaPredicted RBP8.27□□□□□ -1.09
CCDC88A-214ENST00000621814 IGKV4-1P06312 121 aa8.27□□□□□ -1.09
CCDC88A-214ENST00000621814 KRTAP1-5Q9BYS1 174 aa8.27□□□□□ -1.09
CCDC88A-214ENST00000621814 FAM236DA0A1B0GTK5 79 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 FAM236CP0DP71 79 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 UBE2DNLQ8IWF7 75 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 H7BZZ5 65 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 REG3GQ6UW15 175 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 IGLV5-48A0A075B6I7 105 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 HIGD2AQ9BW72 106 aa8.26□□□□□ -1.09
CCDC88A-214ENST00000621814 A0A096LNI7 61 aa8.25□□□□□ -1.09
CCDC88A-214ENST00000621814 COL7A1Q02388 2944 aa8.25□□□□□ -1.09
CCDC88A-214ENST00000621814 RPS28P62857 69 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-214ENST00000621814 PLA2G2DQ9UNK4 145 aa8.25□□□□□ -1.09
CCDC88A-214ENST00000621814 DEFB116Q30KQ4 102 aa8.24□□□□□ -1.09
CCDC88A-214ENST00000621814 DNAH10Q8IVF4 4471 aa8.24□□□□□ -1.09
CCDC88A-214ENST00000621814 SRRM2Q9UQ35 2752 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-214ENST00000621814 CHTF8P0CG12 524 aa8.23□□□□□ -1.09
CCDC88A-214ENST00000621814 SPRR1AP35321 89 aa8.23□□□□□ -1.09
CCDC88A-214ENST00000621814 HUWE1Q7Z6Z7 4374 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-214ENST00000621814 FAM30AQ9NZY2 134 aa8.23□□□□□ -1.09
CCDC88A-214ENST00000621814 IGLV5-37A0A075B6J1 123 aa8.21□□□□□ -1.09
CCDC88A-214ENST00000621814 BCE1O60756 84 aa8.21□□□□□ -1.09
CCDC88A-214ENST00000621814 KLKP1Q107X0 134 aa8.21□□□□□ -1.09
CCDC88A-214ENST00000621814 TMEM254Q8TBM7 123 aa8.21□□□□□ -1.1
CCDC88A-214ENST00000621814 DNAH3Q8TD57 4116 aa8.2□□□□□ -1.1
CCDC88A-214ENST00000621814 C4orf26Q17RF5 130 aa8.2□□□□□ -1.1
CCDC88A-214ENST00000621814 SMIM29Q86T20 159 aa8.2□□□□□ -1.1
CCDC88A-214ENST00000621814 Q8NBF4 154 aa8.2□□□□□ -1.1
CCDC88A-214ENST00000621814 LINC00476Q8WZB0 136 aa8.19□□□□□ -1.1
CCDC88A-214ENST00000621814 TNP2Q05952 138 aa8.18□□□□□ -1.1
CCDC88A-214ENST00000621814 PHF5AQ7RTV0 110 aaKnown RBP8.18□□□□□ -1.1
CCDC88A-214ENST00000621814 K7EQZ3 153 aa8.17□□□□□ -1.1
CCDC88A-214ENST00000621814 C16orf90A8MZG2 172 aa8.16□□□□□ -1.1
CCDC88A-214ENST00000621814 HRCT1Q6UXD1 115 aa8.16□□□□□ -1.1
CCDC88A-214ENST00000621814 DNAH1Q9P2D7 4330 aa8.15□□□□□ -1.1
CCDC88A-214ENST00000621814 OCR1Q9BZK8 76 aa8.15□□□□□ -1.1
CCDC88A-214ENST00000621814 KRTAP11-1Q8IUC1 163 aa8.15□□□□□ -1.11
CCDC88A-214ENST00000621814 IGFL1Q6UW32 110 aa8.14□□□□□ -1.11
CCDC88A-214ENST00000621814 A0A087WSZ3 146 aa8.14□□□□□ -1.11
CCDC88A-214ENST00000621814 UBE2AP49459 152 aa8.14□□□□□ -1.11
CCDC88A-214ENST00000621814 DSCR10P59022 87 aa8.14□□□□□ -1.11
CCDC88A-214ENST00000621814 DNAH9Q9NYC9 4486 aa8.13□□□□□ -1.11
CCDC88A-214ENST00000621814 SPRR4Q96PI1 79 aa8.12□□□□□ -1.11
CCDC88A-214ENST00000621814 SERP1Q9Y6X1 66 aa8.12□□□□□ -1.11
CCDC88A-214ENST00000621814 Q5XG85 94 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms