RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TRGC2P03986 189 aa6.74□□□□□ -1.33
UPF3B-204ENST00000619445 HINT1P49773 126 aaPredicted RBP6.74□□□□□ -1.33
UPF3B-204ENST00000619445 SEC61BP60468 96 aaKnown RBP6.74□□□□□ -1.33
UPF3B-204ENST00000619445 SERF1AO75920 110 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 IGLV6-57P01721 117 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 TSPEAR-AS2P59090 65 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 MOBPQ13875 183 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 ASB16-AS1Q495Z4 193 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 KRTAP9-2Q9BYQ4 174 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 TRAV23DV6A0A075B6W5 121 aa6.72□□□□□ -1.33
UPF3B-204ENST00000619445 IGLV9-49A0A0B4J1Y8 123 aa6.72□□□□□ -1.33
UPF3B-204ENST00000619445 Q9BRP9 147 aa6.71□□□□□ -1.33
UPF3B-204ENST00000619445 ZNF73O43830 326 aaPredicted RBP6.7□□□□□ -1.34
UPF3B-204ENST00000619445 ERC2-IT1O76042 136 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 FABP4P15090 132 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 SLC25A34Q6PIV7 304 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 Q8N377 158 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 E9PLD3 99 aa6.69□□□□□ -1.34
UPF3B-204ENST00000619445 LINC00310P59036 64 aa6.69□□□□□ -1.34
UPF3B-204ENST00000619445 C9orf153Q5TBE3 101 aa6.69□□□□□ -1.34
UPF3B-204ENST00000619445 A0A0J9YXY3 114 aa6.68□□□□□ -1.34
UPF3B-204ENST00000619445 LINC01547P58512 204 aaPredicted RBP6.68□□□□□ -1.34
UPF3B-204ENST00000619445 SPANXCQ9NY87 97 aa6.68□□□□□ -1.34
UPF3B-204ENST00000619445 H3BS24 57 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 TIMM17BO60830 172 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 PMCHL2Q9BQD1 86 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 DHRS4-AS1Q9P1J3 65 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 LIMD2Q9BT23 127 aa6.66□□□□□ -1.34
UPF3B-204ENST00000619445 SPRR1BP22528 89 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 ADAMTSL4-AS1Q5T5F5 129 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 XP32Q5T750 250 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 SOSTDC1Q6X4U4 206 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 LINC00518Q8N0U6 118 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 SPANXDQ9BXN6 97 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 COLCA2A8K830 154 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 SYS1-DBNDD2H3BUS1 97 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 NPC2P61916 151 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 OR13C6PQ8NH95 151 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 LINC00308Q8TCZ7 52 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 COPS9Q8WXC6 57 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 LAMTOR3Q9UHA4 124 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 PET117Q6UWS5 81 aa6.61□□□□□ -1.35
UPF3B-204ENST00000619445 ST20-AS1Q8NBB2 130 aa6.61□□□□□ -1.35
UPF3B-204ENST00000619445 LINC01545Q5VT33 79 aa6.6□□□□□ -1.35
UPF3B-204ENST00000619445 LITAFQ99732 161 aa6.6□□□□□ -1.35
UPF3B-204ENST00000619445 ZNF815PA8K554 130 aa6.59□□□□□ -1.35
UPF3B-204ENST00000619445 CD164Q04900 197 aa6.59□□□□□ -1.35
UPF3B-204ENST00000619445 TRBV7-6A0A0J9YX20 115 aa6.58□□□□□ -1.36
UPF3B-204ENST00000619445 COX7BP24311 80 aa6.58□□□□□ -1.36
UPF3B-204ENST00000619445 ELOF1P60002 83 aaKnown RBP6.58□□□□□ -1.36
UPF3B-204ENST00000619445 KRTAP9-6A0A140TA67 174 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 TEX49A0A1B0GTD5 131 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BKO60814 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BJP06899 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BOP23527 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BBP33778 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 AKR1D1P51857 326 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BDP58876 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BCP62807 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 TAL2Q16559 108 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST2H2BEQ16778 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BHQ93079 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BNQ99877 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BMQ99879 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 PRO1933Q9H354 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 IFITM1P13164 125 aa6.56□□□□□ -1.36
UPF3B-204ENST00000619445 C6orf99Q4VX62 202 aa6.56□□□□□ -1.36
UPF3B-204ENST00000619445 Q6ZVH6 145 aa6.56□□□□□ -1.36
UPF3B-204ENST00000619445 A0A1B0GWB2 263 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 Q5XG85 94 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 SCGB1D4Q6XE38 83 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 KRTAP4-1Q9BYQ7 146 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 LOC100996750A0A140TA64 210 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 C20orf202A1L168 122 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 A4D1N5 150 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 H7C2G1 150 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 SLC7A5P1Q8MH63 180 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 KRTAP4-6Q9BYQ5 205 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 HRCT1Q6UXD1 115 aa6.53□□□□□ -1.36
UPF3B-204ENST00000619445 NHP2Q9NX24 153 aaKnown RBP6.53□□□□□ -1.36
UPF3B-204ENST00000619445 C3orf79P0CE67 100 aa6.52□□□□□ -1.37
UPF3B-204ENST00000619445 Q1RN00 199 aa6.51□□□□□ -1.37
UPF3B-204ENST00000619445 DEFB105AQ8NG35 78 aa6.51□□□□□ -1.37
UPF3B-204ENST00000619445 IGLV5-48A0A075B6I7 105 aa6.5□□□□□ -1.37
UPF3B-204ENST00000619445 A6NDN8 102 aa6.5□□□□□ -1.37
UPF3B-204ENST00000619445 KRTDAPP60985 99 aa6.5□□□□□ -1.37
UPF3B-204ENST00000619445 COA6Q5JTJ3 125 aaKnown RBP6.5□□□□□ -1.37
UPF3B-204ENST00000619445 TRAV13-2A0A0B4J235 113 aa6.49□□□□□ -1.37
UPF3B-204ENST00000619445 TTTY13Q9BZ97 58 aa6.49□□□□□ -1.37
UPF3B-204ENST00000619445 IGLV8-61A0A075B6I0 122 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 C9orf92A6NGG3 77 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 CFC1BP0CG36 223 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 PCOTHQ58A44 107 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 TCL1BO95988 128 aa6.47□□□□□ -1.37
UPF3B-204ENST00000619445 SNRPEP62304 92 aaKnown RBP6.47□□□□□ -1.37
UPF3B-204ENST00000619445 VAMP3Q15836 100 aa6.46□□□□□ -1.37
UPF3B-204ENST00000619445 SMIM29Q86T20 159 aa6.46□□□□□ -1.37
UPF3B-204ENST00000619445 F8WEM9 126 aa6.45□□□□□ -1.38
UPF3B-204ENST00000619445 C1orf195Q5TG92 126 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms