RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 PLNP26678 52 aa1.32□□□□□ -2.2
SMCHD1-213ENST00000609587 C4AP0C0L4 1744 aa1.32□□□□□ -2.2
SMCHD1-213ENST00000609587 AHCTF1Q8WYP5 2266 aa1.31□□□□□ -2.2
SMCHD1-213ENST00000609587 M0R1W7 72 aa1.31□□□□□ -2.2
SMCHD1-213ENST00000609587 SSBP3-AS1Q7Z2R9 100 aa1.31□□□□□ -2.2
SMCHD1-213ENST00000609587 DDX60Q8IY21 1712 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-213ENST00000609587 TOGARAM1Q9Y4F4 1720 aa1.31□□□□□ -2.2
SMCHD1-213ENST00000609587 URB1O60287 2271 aaKnown RBP1.31□□□□□ -2.2
SMCHD1-213ENST00000609587 SAMD9LQ8IVG5 1584 aa1.3□□□□□ -2.2
SMCHD1-213ENST00000609587 ETDCA0A1B0GVM5 59 aa1.3□□□□□ -2.2
SMCHD1-213ENST00000609587 HAMPP81172 84 aa1.3□□□□□ -2.2
SMCHD1-213ENST00000609587 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.3□□□□□ -2.2
SMCHD1-213ENST00000609587 JMJD1CQ15652 2540 aa1.29□□□□□ -2.2
SMCHD1-213ENST00000609587 DEFB131BA0A096LNP1 70 aa1.29□□□□□ -2.2
SMCHD1-213ENST00000609587 K7EIL1 84 aa1.29□□□□□ -2.2
SMCHD1-213ENST00000609587 SERF2P84101 59 aa1.29□□□□□ -2.2
SMCHD1-213ENST00000609587 CNOT1A5YKK6 2376 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-213ENST00000609587 FAM208BQ5VWN6 2430 aa1.28□□□□□ -2.2
SMCHD1-213ENST00000609587 I3L2K1 104 aa1.28□□□□□ -2.2
SMCHD1-213ENST00000609587 GOLGA4Q13439 2230 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-213ENST00000609587 NAV3Q8IVL0 2385 aa1.28□□□□□ -2.2
SMCHD1-213ENST00000609587 RP1L1Q8IWN7 2480 aaPredicted RBP1.28□□□□□ -2.2
SMCHD1-213ENST00000609587 PIEZO2Q9H5I5 2752 aa1.27□□□□□ -2.21
SMCHD1-213ENST00000609587 MROH2BQ7Z745 1585 aa1.27□□□□□ -2.21
SMCHD1-213ENST00000609587 DUOX1Q9NRD9 1551 aa1.27□□□□□ -2.21
SMCHD1-213ENST00000609587 DEFB123Q8N688 67 aa1.27□□□□□ -2.21
SMCHD1-213ENST00000609587 CRIP1P50238 77 aa1.26□□□□□ -2.21
SMCHD1-213ENST00000609587 C4BP0C0L5 1744 aa1.26□□□□□ -2.21
SMCHD1-213ENST00000609587 CACNA1EQ15878 2313 aa1.26□□□□□ -2.21
SMCHD1-213ENST00000609587 CNTRLQ7Z7A1 2325 aa1.26□□□□□ -2.21
SMCHD1-213ENST00000609587 TNRC6CQ9HCJ0 1690 aaKnown RBP1.25□□□□□ -2.21
SMCHD1-213ENST00000609587 SPTY2D1-AS1A0A0U1RR47 76 aa1.24□□□□□ -2.21
SMCHD1-213ENST00000609587 SNRPGP62308 76 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-213ENST00000609587 RPL38P63173 70 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-213ENST00000609587 TENM1Q9UKZ4 2725 aa1.24□□□□□ -2.21
SMCHD1-213ENST00000609587 HELZ2Q9BYK8 2649 aaKnown RBP1.23□□□□□ -2.21
SMCHD1-213ENST00000609587 H0YGX0 51 aa1.23□□□□□ -2.21
SMCHD1-213ENST00000609587 UBE2DNLQ8IWF7 75 aa1.23□□□□□ -2.21
SMCHD1-213ENST00000609587 C10orf95Q9H7T3 257 aa1.23□□□□□ -2.21
SMCHD1-213ENST00000609587 ALMS1Q8TCU4 4167 aa1.22□□□□□ -2.21
SMCHD1-213ENST00000609587 K7EQZ3 153 aa1.22□□□□□ -2.21
SMCHD1-213ENST00000609587 MRPL33O75394 65 aaKnown RBP1.22□□□□□ -2.21
SMCHD1-213ENST00000609587 KRTAP10-4P60372 401 aaPredicted RBP1.22□□□□□ -2.21
SMCHD1-213ENST00000609587 LMO7Q8WWI1 1683 aa1.21□□□□□ -2.22
SMCHD1-213ENST00000609587 LYNX1G3V0Z9 82 aa1.21□□□□□ -2.22
SMCHD1-213ENST00000609587 COX6B2Q6YFQ2 88 aa1.21□□□□□ -2.22
SMCHD1-213ENST00000609587 CRIPTQ9P021 101 aa1.21□□□□□ -2.22
SMCHD1-213ENST00000609587 CDKN2A-AS1Q9UH64 79 aa1.21□□□□□ -2.22
SMCHD1-213ENST00000609587 PRO3102Q9H379 93 aa1.2□□□□□ -2.22
SMCHD1-213ENST00000609587 TP53AIP1Q9HCN2 124 aa1.2□□□□□ -2.22
SMCHD1-213ENST00000609587 ASH1LQ9NR48 2969 aaKnown RBP1.2□□□□□ -2.22
SMCHD1-213ENST00000609587 REV3LO60673 3130 aa1.2□□□□□ -2.22
SMCHD1-213ENST00000609587 LOC730098B7Z3J9 87 aa1.19□□□□□ -2.22
SMCHD1-213ENST00000609587 H0YAA0 97 aa1.19□□□□□ -2.22
SMCHD1-213ENST00000609587 SPINK4O60575 86 aa1.19□□□□□ -2.22
SMCHD1-213ENST00000609587 COX6A2Q02221 97 aa1.19□□□□□ -2.22
SMCHD1-213ENST00000609587 Q8IZM0 81 aa1.19□□□□□ -2.22
SMCHD1-213ENST00000609587 MRPL34Q9BQ48 92 aaKnown RBP1.19□□□□□ -2.22
SMCHD1-213ENST00000609587 LINC00158P58513 81 aa1.18□□□□□ -2.22
SMCHD1-213ENST00000609587 NDUFA3O95167 84 aa1.17□□□□□ -2.22
SMCHD1-213ENST00000609587 CNFNQ9BYD5 112 aa1.17□□□□□ -2.22
SMCHD1-213ENST00000609587 COL6A6A6NMZ7 2263 aa1.17□□□□□ -2.22
SMCHD1-213ENST00000609587 PTPRZ1P23471 2315 aaPredicted RBP1.16□□□□□ -2.22
SMCHD1-213ENST00000609587 USMG5Q96IX5 58 aa1.15□□□□□ -2.23
SMCHD1-213ENST00000609587 CLTCL1P53675 1640 aa1.15□□□□□ -2.23
SMCHD1-213ENST00000609587 DOPEY2Q9Y3R5 2298 aa1.14□□□□□ -2.23
SMCHD1-213ENST00000609587 FXYD6P3P58550 94 aa1.14□□□□□ -2.23
SMCHD1-213ENST00000609587 PRB3Q04118 309 aaPredicted RBP1.14□□□□□ -2.23
SMCHD1-213ENST00000609587 PIGYQ3MUY2 71 aa1.14□□□□□ -2.23
SMCHD1-213ENST00000609587 LELP1Q5T871 98 aa1.14□□□□□ -2.23
SMCHD1-213ENST00000609587 LINC00308Q8TCZ7 52 aa1.14□□□□□ -2.23
SMCHD1-213ENST00000609587 GCC2Q8IWJ2 1684 aa1.13□□□□□ -2.23
SMCHD1-213ENST00000609587 CCL22O00626 93 aa1.13□□□□□ -2.23
SMCHD1-213ENST00000609587 Q5VSD8 79 aa1.13□□□□□ -2.23
SMCHD1-213ENST00000609587 TMEM167BQ9NRX6 74 aa1.13□□□□□ -2.23
SMCHD1-213ENST00000609587 TIMM8BQ9Y5J9 83 aaPredicted RBP1.13□□□□□ -2.23
SMCHD1-213ENST00000609587 C2CD3Q4AC94 2353 aa1.12□□□□□ -2.23
SMCHD1-213ENST00000609587 PLCE1Q9P212 2302 aa1.11□□□□□ -2.23
SMCHD1-213ENST00000609587 SPRR1AP35321 89 aa1.11□□□□□ -2.23
SMCHD1-213ENST00000609587 SMIM2Q9BVW6 85 aa1.1□□□□□ -2.23
SMCHD1-213ENST00000609587 PTPRQQ9UMZ3 2332 aa1.1□□□□□ -2.23
SMCHD1-213ENST00000609587 ZNF462Q96JM2 2506 aa1.1□□□□□ -2.23
SMCHD1-213ENST00000609587 MEGF8Q7Z7M0 2845 aa1.09□□□□□ -2.23
SMCHD1-213ENST00000609587 A0A0D9SG42 100 aa1.09□□□□□ -2.23
SMCHD1-213ENST00000609587 TFF3Q07654 80 aa1.09□□□□□ -2.23
SMCHD1-213ENST00000609587 ROS1P08922 2347 aa1.09□□□□□ -2.24
SMCHD1-213ENST00000609587 DSPP15924 2871 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 IGF2RP11717 2491 aa1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 NDUFA1O15239 70 aa1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 RPS27P42677 84 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 SPINK9Q5DT21 86 aa1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 RPS27LQ71UM5 84 aaKnown RBP1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 USF3Q68DE3 2245 aa1.08□□□□□ -2.24
SMCHD1-213ENST00000609587 PRO0255Q9UI72 69 aa1.07□□□□□ -2.24
SMCHD1-213ENST00000609587 PDE4DIPQ5VU43 2346 aa1.07□□□□□ -2.24
SMCHD1-213ENST00000609587 CACNA1HO95180 2353 aa1.07□□□□□ -2.24
SMCHD1-213ENST00000609587 H1FX-AS1Q4G0G2 97 aa1.06□□□□□ -2.24
SMCHD1-213ENST00000609587 MINOS1Q5TGZ0 78 aa1.06□□□□□ -2.24
SMCHD1-213ENST00000609587 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
SMCHD1-213ENST00000609587 C6orf48Q9UBA6 75 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms