RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 A0A087WZ39 114 aa12.68□□□□□ -0.38
LSM4-203ENST00000593829 SLPIP03973 132 aa12.68□□□□□ -0.38
LSM4-203ENST00000593829 COX7CP15954 63 aa12.67□□□□□ -0.38
LSM4-203ENST00000593829 ATOX1O00244 68 aa12.66□□□□□ -0.38
LSM4-203ENST00000593829 Q6JHZ5 121 aa12.66□□□□□ -0.38
LSM4-203ENST00000593829 A0A087WYN8 130 aa12.66□□□□□ -0.38
LSM4-203ENST00000593829 ZNF561-AS1K7EIQ3 104 aa12.66□□□□□ -0.38
LSM4-203ENST00000593829 LINC00158P58513 81 aa12.66□□□□□ -0.38
LSM4-203ENST00000593829 FAM30AQ9NZY2 134 aa12.65□□□□□ -0.38
LSM4-203ENST00000593829 C2orf48Q96LS8 159 aa12.64□□□□□ -0.39
LSM4-203ENST00000593829 APOBP04114 4563 aaKnown RBP12.64□□□□□ -0.39
LSM4-203ENST00000593829 Q6ZSA8 131 aa12.64□□□□□ -0.39
LSM4-203ENST00000593829 CRYGAP11844 174 aa12.63□□□□□ -0.39
LSM4-203ENST00000593829 TOMM7Q9P0U1 55 aa12.63□□□□□ -0.39
LSM4-203ENST00000593829 A0A1B0GX51 115 aa12.62□□□□□ -0.39
LSM4-203ENST00000593829 LINC01561Q8N1V8 128 aa12.62□□□□□ -0.39
LSM4-203ENST00000593829 RYR1P21817 5038 aa12.61□□□□□ -0.39
LSM4-203ENST00000593829 LINC00167Q96N53 147 aa12.61□□□□□ -0.39
LSM4-203ENST00000593829 HSPG2P98160 4391 aa12.6□□□□□ -0.39
LSM4-203ENST00000593829 HERC2O95714 4834 aa12.6□□□□□ -0.39
LSM4-203ENST00000593829 RPL18AQ02543 176 aaKnown RBP12.59□□□□□ -0.39
LSM4-203ENST00000593829 SPAG11BQ08648 103 aa12.59□□□□□ -0.39
LSM4-203ENST00000593829 HAMPP81172 84 aa12.58□□□□□ -0.39
LSM4-203ENST00000593829 SYCNQ0VAF6 134 aa12.58□□□□□ -0.39
LSM4-203ENST00000593829 C14orf132Q9NPU4 83 aa12.58□□□□□ -0.39
LSM4-203ENST00000593829 C9orf129Q5T035 196 aaKnown RBP12.58□□□□□ -0.4
LSM4-203ENST00000593829 CAMK2N2Q96S95 79 aa12.57□□□□□ -0.4
LSM4-203ENST00000593829 LINC00846Q9NV44 126 aa12.56□□□□□ -0.4
LSM4-203ENST00000593829 ORMDL1Q9P0S3 153 aa12.56□□□□□ -0.4
LSM4-203ENST00000593829 DNAH8Q96JB1 4490 aa12.56□□□□□ -0.4
LSM4-203ENST00000593829 Q8IZM0 81 aa12.55□□□□□ -0.4
LSM4-203ENST00000593829 F8WDY8 70 aa12.54□□□□□ -0.4
LSM4-203ENST00000593829 Q6ZRU5 148 aa12.54□□□□□ -0.4
LSM4-203ENST00000593829 SCXQ7RTU7 201 aa12.54□□□□□ -0.4
LSM4-203ENST00000593829 Q8N1X5 172 aa12.54□□□□□ -0.4
LSM4-203ENST00000593829 CCKP06307 115 aa12.53□□□□□ -0.4
LSM4-203ENST00000593829 PFN2P35080 140 aa12.53□□□□□ -0.4
LSM4-203ENST00000593829 PKIGQ9Y2B9 76 aa12.53□□□□□ -0.4
LSM4-203ENST00000593829 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.53□□□□□ -0.4
LSM4-203ENST00000593829 JMJD7-PLA2G4BH0Y9G9 81 aa12.52□□□□□ -0.4
LSM4-203ENST00000593829 NDUFC2O95298 119 aa12.52□□□□□ -0.4
LSM4-203ENST00000593829 RPS28P62857 69 aaKnown RBP12.52□□□□□ -0.4
LSM4-203ENST00000593829 C6orf226Q5I0X4 101 aa12.52□□□□□ -0.4
LSM4-203ENST00000593829 S100A7L2Q5SY68 101 aa12.52□□□□□ -0.4
LSM4-203ENST00000593829 SERP2Q8N6R1 65 aa12.52□□□□□ -0.41
LSM4-203ENST00000593829 OR13C6PQ8NH95 151 aa12.52□□□□□ -0.41
LSM4-203ENST00000593829 KRTAP17-1Q9BYP8 105 aa12.52□□□□□ -0.41
LSM4-203ENST00000593829 SMR3BP02814 79 aaPredicted RBP12.51□□□□□ -0.41
LSM4-203ENST00000593829 KIAA0087Q14695 138 aa12.51□□□□□ -0.41
LSM4-203ENST00000593829 ATP5EP2Q5VTU8 51 aa12.51□□□□□ -0.41
LSM4-203ENST00000593829 CIRBP-AS1Q8TBR5 109 aa12.51□□□□□ -0.41
LSM4-203ENST00000593829 PANO1I0J062 215 aa12.5□□□□□ -0.41
LSM4-203ENST00000593829 NCR3O14931 201 aa12.5□□□□□ -0.41
LSM4-203ENST00000593829 J3KT08 172 aa12.49□□□□□ -0.41
LSM4-203ENST00000593829 CHTF8P0CG12 524 aa12.49□□□□□ -0.41
LSM4-203ENST00000593829 COX17Q14061 63 aa12.49□□□□□ -0.41
LSM4-203ENST00000593829 DPH3Q96FX2 82 aa12.49□□□□□ -0.41
LSM4-203ENST00000593829 IGKV3D-7A0A0C4DH55 119 aa12.49□□□□□ -0.41
LSM4-203ENST00000593829 SPACA4Q8TDM5 124 aa12.48□□□□□ -0.41
LSM4-203ENST00000593829 IGKV2-24A0A0C4DH68 120 aa12.47□□□□□ -0.41
LSM4-203ENST00000593829 LOC107984640A0A0U1RRK4 108 aa12.47□□□□□ -0.41
LSM4-203ENST00000593829 TMEM256-PLSCR3K7ERE1 68 aa12.47□□□□□ -0.41
LSM4-203ENST00000593829 UNQ6190/PRO20217Q6UXQ8 127 aa12.47□□□□□ -0.41
LSM4-203ENST00000593829 A0A096LNI7 61 aa12.47□□□□□ -0.41
LSM4-203ENST00000593829 C10orf25Q5T742 122 aa12.47□□□□□ -0.41
LSM4-203ENST00000593829 LINC00474Q9P2X8 69 aa12.46□□□□□ -0.42
LSM4-203ENST00000593829 EPM2AB3EWF7 344 aa12.45□□□□□ -0.42
LSM4-203ENST00000593829 TMEM258P61165 79 aa12.45□□□□□ -0.42
LSM4-203ENST00000593829 TRBV10-3A0A0K0K1G6 114 aa12.44□□□□□ -0.42
LSM4-203ENST00000593829 hADV29S1A0JD25 119 aa12.44□□□□□ -0.42
LSM4-203ENST00000593829 FAM229AH3BQW9 127 aa12.44□□□□□ -0.42
LSM4-203ENST00000593829 KRTAP4-5Q9BYR2 181 aa12.44□□□□□ -0.42
LSM4-203ENST00000593829 C6orf48Q9UBA6 75 aa12.44□□□□□ -0.42
LSM4-203ENST00000593829 Q5VSD8 79 aa12.43□□□□□ -0.42
LSM4-203ENST00000593829 LINC00528Q8N1L1 170 aa12.42□□□□□ -0.42
LSM4-203ENST00000593829 PLAC8Q9NZF1 115 aa12.41□□□□□ -0.42
LSM4-203ENST00000593829 A0A087WVE0 104 aa12.4□□□□□ -0.42
LSM4-203ENST00000593829 TLX1NBP0CAT3 122 aa12.39□□□□□ -0.43
LSM4-203ENST00000593829 FAT1Q14517 4588 aa12.38□□□□□ -0.43
LSM4-203ENST00000593829 BCE1O60756 84 aa12.37□□□□□ -0.43
LSM4-203ENST00000593829 C9orf116Q5BN46 136 aaPredicted RBP12.37□□□□□ -0.43
LSM4-203ENST00000593829 CYSTM1Q9H1C7 97 aa12.37□□□□□ -0.43
LSM4-203ENST00000593829 Q6ZRP5 223 aa12.36□□□□□ -0.43
LSM4-203ENST00000593829 NDUFC2-KCTD14E9PQ53 114 aa12.35□□□□□ -0.43
LSM4-203ENST00000593829 PLA2G1BP04054 148 aaKnown RBP12.35□□□□□ -0.43
LSM4-203ENST00000593829 H3BQ85 93 aa12.35□□□□□ -0.43
LSM4-203ENST00000593829 LINC00575Q6W349 94 aa12.35□□□□□ -0.43
LSM4-203ENST00000593829 LOC110117498A0A087WWA1 95 aa12.34□□□□□ -0.43
LSM4-203ENST00000593829 UBL5Q9BZL1 73 aa12.34□□□□□ -0.43
LSM4-203ENST00000593829 PRR3P79522 188 aaKnown RBP12.33□□□□□ -0.44
LSM4-203ENST00000593829 FAM19A5Q7Z5A7 132 aaPredicted RBP12.33□□□□□ -0.44
LSM4-203ENST00000593829 C6orf99Q4VX62 202 aa12.31□□□□□ -0.44
LSM4-203ENST00000593829 C7orf33Q8WU49 177 aa12.31□□□□□ -0.44
LSM4-203ENST00000593829 A0A1W2PNN7 141 aa12.3□□□□□ -0.44
LSM4-203ENST00000593829 GHRHP01286 108 aa12.3□□□□□ -0.44
LSM4-203ENST00000593829 Q6ZQT0 140 aa12.3□□□□□ -0.44
LSM4-203ENST00000593829 RPL37AP61513 92 aaKnown RBP12.29□□□□□ -0.44
LSM4-203ENST00000593829 SRRM2Q9UQ35 2752 aaKnown RBP12.29□□□□□ -0.44
LSM4-203ENST00000593829 PDE6GP18545 87 aa12.28□□□□□ -0.44
LSM4-203ENST00000593829 RBM3P98179 157 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 214.3 ms