RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 REG3GQ6UW15 175 aa6.69□□□□□ -1.34
SS18-213ENST00000579640 SPRR1AP35321 89 aa6.68□□□□□ -1.34
SS18-213ENST00000579640 DIRC1Q969H9 104 aa6.68□□□□□ -1.34
SS18-213ENST00000579640 TRBV7-6A0A0J9YX20 115 aa6.67□□□□□ -1.34
SS18-213ENST00000579640 KRTAP11-1Q8IUC1 163 aa6.67□□□□□ -1.34
SS18-213ENST00000579640 TAX1BP3O14907 124 aa6.66□□□□□ -1.34
SS18-213ENST00000579640 VAMP3Q15836 100 aa6.66□□□□□ -1.34
SS18-213ENST00000579640 C6orf99Q4VX62 202 aa6.66□□□□□ -1.34
SS18-213ENST00000579640 COX6CP09669 75 aa6.66□□□□□ -1.34
SS18-213ENST00000579640 PSMB2P49721 201 aa6.66□□□□□ -1.34
SS18-213ENST00000579640 PSORS1C2Q9UIG4 136 aa6.66□□□□□ -1.34
SS18-213ENST00000579640 ETDCA0A1B0GVM5 59 aa6.65□□□□□ -1.34
SS18-213ENST00000579640 C9orf118A6NHY6 69 aa6.65□□□□□ -1.34
SS18-213ENST00000579640 KRTAP4-16G5E9R7 235 aaPredicted RBP6.65□□□□□ -1.34
SS18-213ENST00000579640 BCE1O60756 84 aa6.65□□□□□ -1.34
SS18-213ENST00000579640 H0YGX0 51 aa6.64□□□□□ -1.35
SS18-213ENST00000579640 TRIAP1O43715 76 aa6.64□□□□□ -1.35
SS18-213ENST00000579640 COX7BP24311 80 aa6.64□□□□□ -1.35
SS18-213ENST00000579640 ELOF1P60002 83 aaKnown RBP6.64□□□□□ -1.35
SS18-213ENST00000579640 LYRM7Q5U5X0 104 aa6.64□□□□□ -1.35
SS18-213ENST00000579640 APOBP04114 4563 aaKnown RBP6.64□□□□□ -1.35
SS18-213ENST00000579640 H3BUT2 72 aa6.63□□□□□ -1.35
SS18-213ENST00000579640 C1orf137Q5JT78 98 aa6.63□□□□□ -1.35
SS18-213ENST00000579640 FAM19A1Q7Z5A9 133 aa6.63□□□□□ -1.35
SS18-213ENST00000579640 B5MCH6 92 aa6.62□□□□□ -1.35
SS18-213ENST00000579640 H0Y9J4 135 aa6.62□□□□□ -1.35
SS18-213ENST00000579640 SCGB1C2P0DMR2 95 aa6.62□□□□□ -1.35
SS18-213ENST00000579640 Q6ZRX8 168 aa6.62□□□□□ -1.35
SS18-213ENST00000579640 LINC00528Q8N1L1 170 aa6.62□□□□□ -1.35
SS18-213ENST00000579640 UBE2AP49459 152 aa6.62□□□□□ -1.35
SS18-213ENST00000579640 NAA38Q9BRA0 125 aaKnown RBP6.62□□□□□ -1.35
SS18-213ENST00000579640 INAFM2P0DMQ5 153 aa6.61□□□□□ -1.35
SS18-213ENST00000579640 EPPK1P58107 5090 aaKnown RBP6.61□□□□□ -1.35
SS18-213ENST00000579640 A0A1W2PPM0 123 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 SMR3BP02814 79 aaPredicted RBP6.6□□□□□ -1.35
SS18-213ENST00000579640 IGLV7-43P04211 117 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 FABP2P12104 132 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 RPL37AP61513 92 aaKnown RBP6.6□□□□□ -1.35
SS18-213ENST00000579640 DHRS4-AS1Q9P1J3 65 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 A0A1B0GX51 115 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 SLC25A20O43772 301 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 SNCGO76070 127 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 KRTAP13-1Q8IUC0 172 aa6.6□□□□□ -1.35
SS18-213ENST00000579640 BIRC6Q9NR09 4857 aa6.59□□□□□ -1.35
SS18-213ENST00000579640 ZNF861PO60384 105 aa6.59□□□□□ -1.35
SS18-213ENST00000579640 PRLHP81277 87 aa6.59□□□□□ -1.35
SS18-213ENST00000579640 LINC00575Q6W349 94 aa6.59□□□□□ -1.35
SS18-213ENST00000579640 TRBV20-1A0A075B6N2 111 aa6.58□□□□□ -1.36
SS18-213ENST00000579640 FAM229AH3BQW9 127 aa6.58□□□□□ -1.36
SS18-213ENST00000579640 CLEC2BQ92478 149 aa6.57□□□□□ -1.36
SS18-213ENST00000579640 Q9BRP9 147 aa6.57□□□□□ -1.36
SS18-213ENST00000579640 hADV29S1A0JD25 119 aa6.57□□□□□ -1.36
SS18-213ENST00000579640 PLA2G1BP04054 148 aaKnown RBP6.57□□□□□ -1.36
SS18-213ENST00000579640 HIGD2AQ9BW72 106 aa6.57□□□□□ -1.36
SS18-213ENST00000579640 LST1O00453 97 aa6.56□□□□□ -1.36
SS18-213ENST00000579640 ATXN8Q156A1 80 aa6.56□□□□□ -1.36
SS18-213ENST00000579640 SMCR5Q8TEV8 140 aa6.56□□□□□ -1.36
SS18-213ENST00000579640 FAM218AQ96MZ4 157 aa6.56□□□□□ -1.36
SS18-213ENST00000579640 RYR1P21817 5038 aa6.56□□□□□ -1.36
SS18-213ENST00000579640 TCL1BO95988 128 aa6.55□□□□□ -1.36
SS18-213ENST00000579640 TRACP01848 142 aa6.55□□□□□ -1.36
SS18-213ENST00000579640 SPCS1Q9Y6A9 102 aa6.55□□□□□ -1.36
SS18-213ENST00000579640 DNAL4O96015 105 aa6.54□□□□□ -1.36
SS18-213ENST00000579640 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.54□□□□□ -1.36
SS18-213ENST00000579640 KRTAP10-4P60372 401 aaPredicted RBP6.53□□□□□ -1.36
SS18-213ENST00000579640 Q5VSD8 79 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 Q8N1X5 172 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 VPS13BQ7Z7G8 4022 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 HSPG2P98160 4391 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 ERC2-IT1O76042 136 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 GHRHP01286 108 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 OCIAD2Q56VL3 154 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 SPINK6Q6UWN8 80 aa6.53□□□□□ -1.36
SS18-213ENST00000579640 ZNF706Q9Y5V0 76 aaPredicted RBP6.53□□□□□ -1.36
SS18-213ENST00000579640 K7EP34 96 aa6.52□□□□□ -1.37
SS18-213ENST00000579640 GTF2H5Q6ZYL4 71 aa6.52□□□□□ -1.37
SS18-213ENST00000579640 Q6ZQY7 126 aa6.51□□□□□ -1.37
SS18-213ENST00000579640 H3BQ85 93 aa6.5□□□□□ -1.37
SS18-213ENST00000579640 PPDPFLQ8WWR9 84 aa6.5□□□□□ -1.37
SS18-213ENST00000579640 ORMDL1Q9P0S3 153 aa6.5□□□□□ -1.37
SS18-213ENST00000579640 KIAA1109Q2LD37 5005 aa6.49□□□□□ -1.37
SS18-213ENST00000579640 IGLV5-48A0A075B6I7 105 aa6.49□□□□□ -1.37
SS18-213ENST00000579640 H3BMG7 143 aa6.49□□□□□ -1.37
SS18-213ENST00000579640 SPRR4Q96PI1 79 aa6.49□□□□□ -1.37
SS18-213ENST00000579640 ST20-AS1Q8NBB2 130 aa6.48□□□□□ -1.37
SS18-213ENST00000579640 FAT1Q14517 4588 aa6.48□□□□□ -1.37
SS18-213ENST00000579640 TEX49A0A1B0GTD5 131 aa6.48□□□□□ -1.37
SS18-213ENST00000579640 A0A1B0GV90 55 aa6.48□□□□□ -1.37
SS18-213ENST00000579640 C9JAW5 83 aa6.47□□□□□ -1.37
SS18-213ENST00000579640 SPRR1BP22528 89 aa6.47□□□□□ -1.37
SS18-213ENST00000579640 LINC01547P58512 204 aaPredicted RBP6.47□□□□□ -1.37
SS18-213ENST00000579640 TMEM256-PLSCR3K7ERE1 68 aa6.46□□□□□ -1.37
SS18-213ENST00000579640 LINC00483Q53H64 154 aa6.46□□□□□ -1.37
SS18-213ENST00000579640 GAGE2AQ6NT46 116 aa6.46□□□□□ -1.37
SS18-213ENST00000579640 DEFB105AQ8NG35 78 aa6.46□□□□□ -1.37
SS18-213ENST00000579640 BAALC-AS2P0C853 105 aa6.46□□□□□ -1.38
SS18-213ENST00000579640 Q8N377 158 aa6.46□□□□□ -1.38
SS18-213ENST00000579640 H3BT86 120 aa6.45□□□□□ -1.38
SS18-213ENST00000579640 KRTAP17-1Q9BYP8 105 aa6.45□□□□□ -1.38
SS18-213ENST00000579640 UBE2V1Q13404 147 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 207.6 ms