RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 H7BZZ5 65 aa11.24□□□□□ -0.61
VPS53-215ENST00000573028 SYCNQ0VAF6 134 aa11.24□□□□□ -0.61
VPS53-215ENST00000573028 MAST4O15021 2626 aa11.24□□□□□ -0.61
VPS53-215ENST00000573028 RPL37AP8A6NKH3 93 aa11.23□□□□□ -0.61
VPS53-215ENST00000573028 F8WEM9 126 aa11.22□□□□□ -0.61
VPS53-215ENST00000573028 NREPQ16612 68 aa11.22□□□□□ -0.61
VPS53-215ENST00000573028 SERTAD4-AS1Q5TG53 156 aa11.22□□□□□ -0.61
VPS53-215ENST00000573028 HRCT1Q6UXD1 115 aa11.22□□□□□ -0.61
VPS53-215ENST00000573028 BAHCC1Q9P281 2608 aa11.21□□□□□ -0.61
VPS53-215ENST00000573028 TRBV7-6A0A0J9YX20 115 aa11.21□□□□□ -0.61
VPS53-215ENST00000573028 KRTAP10-11P60412 298 aa11.21□□□□□ -0.62
VPS53-215ENST00000573028 DEFB131BA0A096LNP1 70 aa11.2□□□□□ -0.62
VPS53-215ENST00000573028 BPY2O14599 106 aa11.2□□□□□ -0.62
VPS53-215ENST00000573028 C5orf47Q569G3 176 aa11.2□□□□□ -0.62
VPS53-215ENST00000573028 C7orf33Q8WU49 177 aa11.19□□□□□ -0.62
VPS53-215ENST00000573028 FAM168BA1KXE4 195 aa11.16□□□□□ -0.62
VPS53-215ENST00000573028 KLKP1Q107X0 134 aa11.16□□□□□ -0.62
VPS53-215ENST00000573028 BCE1O60756 84 aa11.16□□□□□ -0.62
VPS53-215ENST00000573028 H3BNG1 76 aa11.15□□□□□ -0.62
VPS53-215ENST00000573028 Q5XG85 94 aa11.15□□□□□ -0.62
VPS53-215ENST00000573028 C11orf45Q8TAV5 145 aa11.15□□□□□ -0.62
VPS53-215ENST00000573028 Q8N377 158 aa11.15□□□□□ -0.62
VPS53-215ENST00000573028 KMT2BQ9UMN6 2715 aaPredicted RBP11.15□□□□□ -0.63
VPS53-215ENST00000573028 LINC01556Q5JQF7 62 aa11.14□□□□□ -0.63
VPS53-215ENST00000573028 FBN1P35555 2871 aaKnown RBP11.14□□□□□ -0.63
VPS53-215ENST00000573028 CASC10Q5T4H9 136 aa11.13□□□□□ -0.63
VPS53-215ENST00000573028 IGKV4-1P06312 121 aa11.12□□□□□ -0.63
VPS53-215ENST00000573028 ST20-AS1Q8NBB2 130 aa11.12□□□□□ -0.63
VPS53-215ENST00000573028 KCNQ1DNQ9H478 68 aa11.12□□□□□ -0.63
VPS53-215ENST00000573028 SERP1Q9Y6X1 66 aa11.11□□□□□ -0.63
VPS53-215ENST00000573028 ETDCA0A1B0GVM5 59 aa11.11□□□□□ -0.63
VPS53-215ENST00000573028 WIPF1O43516 503 aa11.11□□□□□ -0.63
VPS53-215ENST00000573028 TMEM254Q8TBM7 123 aa11.11□□□□□ -0.63
VPS53-215ENST00000573028 PRB2P02812 416 aaPredicted RBP11.09□□□□□ -0.63
VPS53-215ENST00000573028 FUSP35637 526 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS53-215ENST00000573028 COL6A5A8TX70 2615 aa11.08□□□□□ -0.64
VPS53-215ENST00000573028 Q9BRP9 147 aa11.07□□□□□ -0.64
VPS53-215ENST00000573028 UBE2BP63146 152 aa11.06□□□□□ -0.64
VPS53-215ENST00000573028 Q6ZRX8 168 aa11.06□□□□□ -0.64
VPS53-215ENST00000573028 ANK2Q01484 3957 aa11.06□□□□□ -0.64
VPS53-215ENST00000573028 C1orf137Q5JT78 98 aa11.05□□□□□ -0.64
VPS53-215ENST00000573028 FAM30AQ9NZY2 134 aa11.04□□□□□ -0.64
VPS53-215ENST00000573028 A0A1W2PNM2 257 aa11.04□□□□□ -0.64
VPS53-215ENST00000573028 NBEAL1Q6ZS30 2694 aa11.03□□□□□ -0.64
VPS53-215ENST00000573028 ERC2-IT1O76042 136 aa11.03□□□□□ -0.64
VPS53-215ENST00000573028 DHRS4-AS1Q9P1J3 65 aa11.03□□□□□ -0.64
VPS53-215ENST00000573028 A0A0G2JQZ4 141 aa11.03□□□□□ -0.64
VPS53-215ENST00000573028 A0A1W2PNN7 141 aa11.03□□□□□ -0.64
VPS53-215ENST00000573028 MRAPQ8TCY5 172 aa11.03□□□□□ -0.64
VPS53-215ENST00000573028 DNAH10OSP0CZ25 163 aa11.02□□□□□ -0.64
VPS53-215ENST00000573028 HIGD2AQ9BW72 106 aa11.02□□□□□ -0.64
VPS53-215ENST00000573028 LINC00588Q9Y4M8 146 aa11.02□□□□□ -0.64
VPS53-215ENST00000573028 IGLV5-48A0A075B6I7 105 aa11.02□□□□□ -0.65
VPS53-215ENST00000573028 SMIM29Q86T20 159 aa11.02□□□□□ -0.65
VPS53-215ENST00000573028 LINC00474Q9P2X8 69 aa11.02□□□□□ -0.65
VPS53-215ENST00000573028 IGLV1-50A0A075B6I6 118 aa11.01□□□□□ -0.65
VPS53-215ENST00000573028 NDUFC1O43677 76 aa11.01□□□□□ -0.65
VPS53-215ENST00000573028 OCR1Q9BZK8 76 aa11.01□□□□□ -0.65
VPS53-215ENST00000573028 F8WDY8 70 aa10.99□□□□□ -0.65
VPS53-215ENST00000573028 PRYO14603 147 aa10.99□□□□□ -0.65
VPS53-215ENST00000573028 KRTAP7-1Q8IUC3 87 aa10.99□□□□□ -0.65
VPS53-215ENST00000573028 MRPL55Q7Z7F7 128 aaKnown RBP10.98□□□□□ -0.65
VPS53-215ENST00000573028 IGKV2-24A0A0C4DH68 120 aa10.97□□□□□ -0.65
VPS53-215ENST00000573028 KRTAP4-16G5E9R7 235 aaPredicted RBP10.97□□□□□ -0.65
VPS53-215ENST00000573028 FP248Q71RG6 208 aaPredicted RBP10.97□□□□□ -0.65
VPS53-215ENST00000573028 EPM2AB3EWF7 344 aa10.96□□□□□ -0.65
VPS53-215ENST00000573028 SMIM26A0A096LP01 95 aa10.96□□□□□ -0.66
VPS53-215ENST00000573028 DEFB116Q30KQ4 102 aa10.96□□□□□ -0.66
VPS53-215ENST00000573028 KRTAP24-1Q3LI83 254 aa10.96□□□□□ -0.66
VPS53-215ENST00000573028 TLX1NBP0CAT3 122 aa10.96□□□□□ -0.66
VPS53-215ENST00000573028 Q8NBF4 154 aa10.96□□□□□ -0.66
VPS53-215ENST00000573028 A0A0U1RQV1 116 aa10.94□□□□□ -0.66
VPS53-215ENST00000573028 MPLKIPQ8TAP9 179 aa10.94□□□□□ -0.66
VPS53-215ENST00000573028 K7EQZ3 153 aa10.92□□□□□ -0.66
VPS53-215ENST00000573028 SPRR1AP35321 89 aa10.92□□□□□ -0.66
VPS53-215ENST00000573028 PRLHP81277 87 aa10.92□□□□□ -0.66
VPS53-215ENST00000573028 PLA2G2DQ9UNK4 145 aa10.92□□□□□ -0.66
VPS53-215ENST00000573028 TNP2Q05952 138 aa10.92□□□□□ -0.66
VPS53-215ENST00000573028 LINC00336Q6ZUF6 198 aa10.92□□□□□ -0.66
VPS53-215ENST00000573028 FAM229BQ4G0N7 80 aa10.91□□□□□ -0.66
VPS53-215ENST00000573028 REG3GQ6UW15 175 aa10.91□□□□□ -0.66
VPS53-215ENST00000573028 MGAM2Q2M2H8 2515 aa10.89□□□□□ -0.67
VPS53-215ENST00000573028 DSCR10P59022 87 aa10.89□□□□□ -0.67
VPS53-215ENST00000573028 LINC00476Q8WZB0 136 aa10.89□□□□□ -0.67
VPS53-215ENST00000573028 ATP5EP56381 51 aaPredicted RBP10.89□□□□□ -0.67
VPS53-215ENST00000573028 IGLV5-37A0A075B6J1 123 aa10.88□□□□□ -0.67
VPS53-215ENST00000573028 SRRM2Q9UQ35 2752 aaKnown RBP10.88□□□□□ -0.67
VPS53-215ENST00000573028 LRCOL1A6NCL2 159 aa10.87□□□□□ -0.67
VPS53-215ENST00000573028 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.86□□□□□ -0.67
VPS53-215ENST00000573028 STAB2Q8WWQ8 2551 aa10.85□□□□□ -0.67
VPS53-215ENST00000573028 PRR4Q16378 134 aa10.85□□□□□ -0.67
VPS53-215ENST00000573028 SPRR4Q96PI1 79 aa10.85□□□□□ -0.67
VPS53-215ENST00000573028 A0A096LNI7 61 aa10.84□□□□□ -0.67
VPS53-215ENST00000573028 WFDC13Q8IUB5 93 aa10.84□□□□□ -0.67
VPS53-215ENST00000573028 PSCAO43653 123 aa10.84□□□□□ -0.67
VPS53-215ENST00000573028 A0A087WSZ3 146 aa10.83□□□□□ -0.68
VPS53-215ENST00000573028 IGFL1Q6UW32 110 aa10.82□□□□□ -0.68
VPS53-215ENST00000573028 A0A1B0GW54 56 aa10.82□□□□□ -0.68
VPS53-215ENST00000573028 CSMD3Q7Z407 3707 aa10.8□□□□□ -0.68
VPS53-215ENST00000573028 RPL37AP61513 92 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms