RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MT1HL1P0DM35 61 aa12.57□□□□□ -0.4
VPS53-210ENST00000571456 MUSTN1Q8IVN3 82 aa12.57□□□□□ -0.4
VPS53-210ENST00000571456 HNRNPA3P51991 378 aaKnown RBP12.56□□□□□ -0.4
VPS53-210ENST00000571456 LINC00337Q8N6G1 96 aa12.55□□□□□ -0.4
VPS53-210ENST00000571456 H0Y9J4 135 aa12.54□□□□□ -0.4
VPS53-210ENST00000571456 SMIM6P0DI80 62 aa12.54□□□□□ -0.4
VPS53-210ENST00000571456 SPRR1AP35321 89 aa12.54□□□□□ -0.4
VPS53-210ENST00000571456 UBE2AP49459 152 aa12.54□□□□□ -0.4
VPS53-210ENST00000571456 HIST1H4GQ99525 98 aa12.54□□□□□ -0.4
VPS53-210ENST00000571456 TAL2Q16559 108 aa12.52□□□□□ -0.41
VPS53-210ENST00000571456 FAM19A1Q7Z5A9 133 aa12.51□□□□□ -0.41
VPS53-210ENST00000571456 KRTAP13-1Q8IUC0 172 aa12.51□□□□□ -0.41
VPS53-210ENST00000571456 TRAV23DV6A0A075B6W5 121 aa12.5□□□□□ -0.41
VPS53-210ENST00000571456 TRAV13-2A0A0B4J235 113 aa12.5□□□□□ -0.41
VPS53-210ENST00000571456 OR13C6PQ8NH95 151 aa12.5□□□□□ -0.41
VPS53-210ENST00000571456 ETDCA0A1B0GVM5 59 aa12.49□□□□□ -0.41
VPS53-210ENST00000571456 HINT1P49773 126 aaPredicted RBP12.48□□□□□ -0.41
VPS53-210ENST00000571456 UQCR10Q9UDW1 63 aa12.48□□□□□ -0.41
VPS53-210ENST00000571456 KRTAP4-16G5E9R7 235 aaPredicted RBP12.47□□□□□ -0.41
VPS53-210ENST00000571456 C2orf91Q6ZV80 131 aa12.47□□□□□ -0.41
VPS53-210ENST00000571456 KRTAP9-2Q9BYQ4 174 aa12.47□□□□□ -0.41
VPS53-210ENST00000571456 ZNF73O43830 326 aaPredicted RBP12.46□□□□□ -0.41
VPS53-210ENST00000571456 A4D1N5 150 aa12.45□□□□□ -0.42
VPS53-210ENST00000571456 A6NDN8 102 aa12.44□□□□□ -0.42
VPS53-210ENST00000571456 LOC105371267A0A1B0GV96 52 aa12.43□□□□□ -0.42
VPS53-210ENST00000571456 PRLHP81277 87 aa12.43□□□□□ -0.42
VPS53-210ENST00000571456 TMEM238LA0A1B0GVL6 79 aa12.42□□□□□ -0.42
VPS53-210ENST00000571456 A6NJY4 79 aa12.42□□□□□ -0.42
VPS53-210ENST00000571456 TRBV7-6A0A0J9YX20 115 aa12.41□□□□□ -0.42
VPS53-210ENST00000571456 B5MCH6 92 aa12.41□□□□□ -0.42
VPS53-210ENST00000571456 Q6ZRX8 168 aa12.41□□□□□ -0.42
VPS53-210ENST00000571456 LINC01600Q96MT4 127 aa12.41□□□□□ -0.42
VPS53-210ENST00000571456 HSD52Q0P140 79 aa12.4□□□□□ -0.42
VPS53-210ENST00000571456 CEND1Q8N111 149 aa12.4□□□□□ -0.42
VPS53-210ENST00000571456 HIGD2AQ9BW72 106 aa12.39□□□□□ -0.43
VPS53-210ENST00000571456 ZNF706Q9Y5V0 76 aaPredicted RBP12.39□□□□□ -0.43
VPS53-210ENST00000571456 A0A0B4J2C4 111 aa12.36□□□□□ -0.43
VPS53-210ENST00000571456 C6orf99Q4VX62 202 aa12.35□□□□□ -0.43
VPS53-210ENST00000571456 KRTAP9-6A0A140TA67 174 aa12.34□□□□□ -0.43
VPS53-210ENST00000571456 A0A1B0GWB2 263 aa12.34□□□□□ -0.43
VPS53-210ENST00000571456 KRTAP1-4P0C5Y4 121 aa12.34□□□□□ -0.43
VPS53-210ENST00000571456 RPL13AP40429 203 aaKnown RBP12.34□□□□□ -0.43
VPS53-210ENST00000571456 ELOF1P60002 83 aaKnown RBP12.34□□□□□ -0.43
VPS53-210ENST00000571456 RAB37Q96AX2 223 aa12.34□□□□□ -0.43
VPS53-210ENST00000571456 DHRS4-AS1Q9P1J3 65 aa12.34□□□□□ -0.43
VPS53-210ENST00000571456 COX7BP24311 80 aa12.33□□□□□ -0.44
VPS53-210ENST00000571456 VAMP3Q15836 100 aa12.33□□□□□ -0.44
VPS53-210ENST00000571456 FAM229BQ4G0N7 80 aa12.33□□□□□ -0.44
VPS53-210ENST00000571456 SMCR5Q8TEV8 140 aa12.32□□□□□ -0.44
VPS53-210ENST00000571456 TSTD3H0UI37 97 aa12.31□□□□□ -0.44
VPS53-210ENST00000571456 CFC1BP0CG36 223 aa12.31□□□□□ -0.44
VPS53-210ENST00000571456 CFC1P0CG37 223 aa12.31□□□□□ -0.44
VPS53-210ENST00000571456 SMIM11BQ8TCY0 68 aa12.31□□□□□ -0.44
VPS53-210ENST00000571456 C12orf57Q99622 126 aa12.3□□□□□ -0.44
VPS53-210ENST00000571456 Q9BRP9 147 aa12.3□□□□□ -0.44
VPS53-210ENST00000571456 NHP2Q9NX24 153 aaKnown RBP12.29□□□□□ -0.44
VPS53-210ENST00000571456 CRYGAP11844 174 aa12.28□□□□□ -0.44
VPS53-210ENST00000571456 SPRR4Q96PI1 79 aa12.28□□□□□ -0.44
VPS53-210ENST00000571456 PRO1933Q9H354 126 aa12.28□□□□□ -0.44
VPS53-210ENST00000571456 FXYD2P54710 66 aa12.27□□□□□ -0.45
VPS53-210ENST00000571456 KRTAP10-8P60410 259 aa12.27□□□□□ -0.45
VPS53-210ENST00000571456 BVES-AS1Q5T3Y7 98 aa12.27□□□□□ -0.45
VPS53-210ENST00000571456 PRO1854Q9UHT4 67 aa12.27□□□□□ -0.45
VPS53-210ENST00000571456 FAT4Q6V0I7 4981 aa12.24□□□□□ -0.45
VPS53-210ENST00000571456 SLC25A20O43772 301 aa12.23□□□□□ -0.45
VPS53-210ENST00000571456 LINC00483Q53H64 154 aa12.23□□□□□ -0.45
VPS53-210ENST00000571456 M0R143 59 aa12.22□□□□□ -0.45
VPS53-210ENST00000571456 PRR26Q8N8Z3 221 aa12.22□□□□□ -0.45
VPS53-210ENST00000571456 ERC2-IT1O76042 136 aa12.21□□□□□ -0.45
VPS53-210ENST00000571456 Q1RN00 199 aa12.2□□□□□ -0.46
VPS53-210ENST00000571456 H0YGX0 51 aa12.19□□□□□ -0.46
VPS53-210ENST00000571456 SNCGO76070 127 aa12.19□□□□□ -0.46
VPS53-210ENST00000571456 A0A087X002 238 aa12.17□□□□□ -0.46
VPS53-210ENST00000571456 H7C2G1 150 aa12.17□□□□□ -0.46
VPS53-210ENST00000571456 GAGE2AQ6NT46 116 aa12.17□□□□□ -0.46
VPS53-210ENST00000571456 LPAP08519 4548 aa12.17□□□□□ -0.46
VPS53-210ENST00000571456 SPRR1BP22528 89 aa12.16□□□□□ -0.46
VPS53-210ENST00000571456 CTAG1AP78358 180 aa12.16□□□□□ -0.46
VPS53-210ENST00000571456 LINC00575Q6W349 94 aa12.16□□□□□ -0.46
VPS53-210ENST00000571456 TYMSOSQ8TAI1 123 aa12.16□□□□□ -0.46
VPS53-210ENST00000571456 MUC2Q02817 5179 aa12.16□□□□□ -0.46
VPS53-210ENST00000571456 hADV29S1A0JD25 119 aa12.14□□□□□ -0.47
VPS53-210ENST00000571456 ANAPC11Q9NYG5 84 aa12.14□□□□□ -0.47
VPS53-210ENST00000571456 TEX49A0A1B0GTD5 131 aa12.12□□□□□ -0.47
VPS53-210ENST00000571456 COX6CP09669 75 aa12.12□□□□□ -0.47
VPS53-210ENST00000571456 IGLV5-48A0A075B6I7 105 aa12.11□□□□□ -0.47
VPS53-210ENST00000571456 A0A1B0GX51 115 aa12.11□□□□□ -0.47
VPS53-210ENST00000571456 KRTAP13-2Q52LG2 175 aa12.1□□□□□ -0.47
VPS53-210ENST00000571456 ST20-AS1Q8NBB2 130 aa12.1□□□□□ -0.47
VPS53-210ENST00000571456 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.09□□□□□ -0.47
VPS53-210ENST00000571456 K7ERJ3 54 aa12.08□□□□□ -0.48
VPS53-210ENST00000571456 GHRHP01286 108 aa12.08□□□□□ -0.48
VPS53-210ENST00000571456 SSBP3-AS1Q7Z2R9 100 aa12.08□□□□□ -0.48
VPS53-210ENST00000571456 PPDPFLQ8WWR9 84 aa12.08□□□□□ -0.48
VPS53-210ENST00000571456 LAMTOR3Q9UHA4 124 aa12.08□□□□□ -0.48
VPS53-210ENST00000571456 PSMB2P49721 201 aa12.07□□□□□ -0.48
VPS53-210ENST00000571456 OCIAD2Q56VL3 154 aa12.07□□□□□ -0.48
VPS53-210ENST00000571456 TRIAP1O43715 76 aa12.06□□□□□ -0.48
VPS53-210ENST00000571456 TSPAN13O95857 204 aa12.05□□□□□ -0.48
VPS53-210ENST00000571456 SPAG11AQ6PDA7 123 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms