RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 CD164Q04900 197 aa8.36□□□□□ -1.07
CLK3-223ENST00000568488 PMCHL1Q16048 86 aa8.36□□□□□ -1.07
CLK3-223ENST00000568488 SEC11CQ9BY50 192 aa8.36□□□□□ -1.07
CLK3-223ENST00000568488 ZNF73O43830 326 aaPredicted RBP8.35□□□□□ -1.07
CLK3-223ENST00000568488 SPRR1BP22528 89 aa8.35□□□□□ -1.07
CLK3-223ENST00000568488 SPANXB1Q9NS25 103 aaPredicted RBP8.35□□□□□ -1.07
CLK3-223ENST00000568488 HBDP02042 147 aa8.34□□□□□ -1.07
CLK3-223ENST00000568488 PRO1933Q9H354 126 aa8.34□□□□□ -1.07
CLK3-223ENST00000568488 MYMXA0A1B0GTQ4 84 aa8.33□□□□□ -1.08
CLK3-223ENST00000568488 HINT1P49773 126 aaPredicted RBP8.33□□□□□ -1.08
CLK3-223ENST00000568488 FABP9Q0Z7S8 132 aa8.33□□□□□ -1.08
CLK3-223ENST00000568488 C20orf202A1L168 122 aa8.32□□□□□ -1.08
CLK3-223ENST00000568488 MT2AP02795 61 aa8.32□□□□□ -1.08
CLK3-223ENST00000568488 Q1RN00 199 aa8.32□□□□□ -1.08
CLK3-223ENST00000568488 ATP11AUNQ6ZP68 121 aa8.32□□□□□ -1.08
CLK3-223ENST00000568488 MIEN1Q9BRT3 115 aa8.32□□□□□ -1.08
CLK3-223ENST00000568488 LOC107984156A0A0G2JMH3 177 aa8.31□□□□□ -1.08
CLK3-223ENST00000568488 Q5XG85 94 aa8.31□□□□□ -1.08
CLK3-223ENST00000568488 SMIM29Q86T20 159 aa8.31□□□□□ -1.08
CLK3-223ENST00000568488 ARL17AQ8IVW1 177 aa8.31□□□□□ -1.08
CLK3-223ENST00000568488 LINC00846Q9NV44 126 aa8.31□□□□□ -1.08
CLK3-223ENST00000568488 LINC00614P0C842 121 aa8.3□□□□□ -1.08
CLK3-223ENST00000568488 URB1-AS1Q96HZ7 61 aa8.3□□□□□ -1.08
CLK3-223ENST00000568488 APOC3P02656 99 aa8.29□□□□□ -1.08
CLK3-223ENST00000568488 DEFB105AQ8NG35 78 aa8.29□□□□□ -1.08
CLK3-223ENST00000568488 AKR1D1P51857 326 aa8.28□□□□□ -1.08
CLK3-223ENST00000568488 TAL2Q16559 108 aa8.28□□□□□ -1.08
CLK3-223ENST00000568488 A0A0G2JQZ4 141 aa8.27□□□□□ -1.09
CLK3-223ENST00000568488 NDUFC2O95298 119 aa8.27□□□□□ -1.09
CLK3-223ENST00000568488 MT1FP04733 61 aa8.26□□□□□ -1.09
CLK3-223ENST00000568488 DHRS4-AS1Q9P1J3 65 aa8.26□□□□□ -1.09
CLK3-223ENST00000568488 S100PP25815 95 aa8.25□□□□□ -1.09
CLK3-223ENST00000568488 KRTAP10-10P60014 251 aa8.25□□□□□ -1.09
CLK3-223ENST00000568488 SVBPQ8N300 66 aa8.25□□□□□ -1.09
CLK3-223ENST00000568488 KRTAP9-3Q9BYQ3 159 aa8.25□□□□□ -1.09
CLK3-223ENST00000568488 NPC2P61916 151 aa8.24□□□□□ -1.09
CLK3-223ENST00000568488 C18orf32Q8TCD1 76 aa8.24□□□□□ -1.09
CLK3-223ENST00000568488 RPS10P5Q9NQ39 176 aa8.24□□□□□ -1.09
CLK3-223ENST00000568488 SNAPINO95295 136 aa8.23□□□□□ -1.09
CLK3-223ENST00000568488 RHEBQ15382 184 aa8.23□□□□□ -1.09
CLK3-223ENST00000568488 COX19Q49B96 90 aa8.23□□□□□ -1.09
CLK3-223ENST00000568488 PCP2Q8IVA1 136 aa8.23□□□□□ -1.09
CLK3-223ENST00000568488 CBY1Q9Y3M2 126 aa8.23□□□□□ -1.09
CLK3-223ENST00000568488 TRAV12-1A0A0B4J245 112 aa8.22□□□□□ -1.09
CLK3-223ENST00000568488 TSPEAR-AS2P59090 65 aa8.22□□□□□ -1.09
CLK3-223ENST00000568488 KRTAP6-3Q3LI67 103 aa8.22□□□□□ -1.09
CLK3-223ENST00000568488 TRBV20-1A0A075B6N2 111 aa8.21□□□□□ -1.1
CLK3-223ENST00000568488 TCL1BO95988 128 aa8.21□□□□□ -1.1
CLK3-223ENST00000568488 TEX49A0A1B0GTD5 131 aa8.2□□□□□ -1.1
CLK3-223ENST00000568488 S100A1P23297 94 aa8.2□□□□□ -1.1
CLK3-223ENST00000568488 Q75L30 129 aa8.2□□□□□ -1.1
CLK3-223ENST00000568488 OR13C6PQ8NH95 151 aa8.2□□□□□ -1.1
CLK3-223ENST00000568488 OBSCN-AS1Q96MR7 158 aa8.2□□□□□ -1.1
CLK3-223ENST00000568488 SOSTDC1Q6X4U4 206 aa8.19□□□□□ -1.1
CLK3-223ENST00000568488 IFI27L1Q96BM0 104 aa8.19□□□□□ -1.1
CLK3-223ENST00000568488 YPEL4Q96NS1 127 aa8.19□□□□□ -1.1
CLK3-223ENST00000568488 EIF4EBP3O60516 100 aaPredicted RBP8.18□□□□□ -1.1
CLK3-223ENST00000568488 LEPROTO15243 131 aa8.17□□□□□ -1.1
CLK3-223ENST00000568488 KRTAP19-6Q3LI70 58 aa8.17□□□□□ -1.1
CLK3-223ENST00000568488 COX7BP24311 80 aa8.16□□□□□ -1.1
CLK3-223ENST00000568488 H0Y8G0 127 aa8.14□□□□□ -1.11
CLK3-223ENST00000568488 J3QQQ9 107 aa8.14□□□□□ -1.11
CLK3-223ENST00000568488 TRAPPC1Q9Y5R8 145 aa8.14□□□□□ -1.11
CLK3-223ENST00000568488 FAM236DA0A1B0GTK5 79 aa8.13□□□□□ -1.11
CLK3-223ENST00000568488 FAM236CP0DP71 79 aa8.13□□□□□ -1.11
CLK3-223ENST00000568488 ELOF1P60002 83 aaKnown RBP8.13□□□□□ -1.11
CLK3-223ENST00000568488 ADAMTSL4-AS1Q5T5F5 129 aa8.12□□□□□ -1.11
CLK3-223ENST00000568488 COLCA2A8K830 154 aa8.11□□□□□ -1.11
CLK3-223ENST00000568488 LGALS3P17931 250 aaKnown RBP8.11□□□□□ -1.11
CLK3-223ENST00000568488 NMUP48645 174 aa8.11□□□□□ -1.11
CLK3-223ENST00000568488 C6orf99Q4VX62 202 aa8.11□□□□□ -1.11
CLK3-223ENST00000568488 Q96NJ1 140 aa8.11□□□□□ -1.11
CLK3-223ENST00000568488 C20orf166-AS1Q96NR2 134 aa8.09□□□□□ -1.11
CLK3-223ENST00000568488 NEBP20929 6669 aa8.07□□□□□ -1.12
CLK3-223ENST00000568488 HERVK_113P61574 105 aa8.07□□□□□ -1.12
CLK3-223ENST00000568488 SPANXCQ9NY87 97 aa8.07□□□□□ -1.12
CLK3-223ENST00000568488 A0A0J9YXY3 114 aa8.06□□□□□ -1.12
CLK3-223ENST00000568488 IGLV5-48A0A075B6I7 105 aa8.05□□□□□ -1.12
CLK3-223ENST00000568488 CHCHD1Q96BP2 118 aaKnown RBP8.05□□□□□ -1.12
CLK3-223ENST00000568488 SPANXDQ9BXN6 97 aa8.05□□□□□ -1.12
CLK3-223ENST00000568488 LINC00308Q8TCZ7 52 aa8.03□□□□□ -1.12
CLK3-223ENST00000568488 PLNP26678 52 aa8.01□□□□□ -1.13
CLK3-223ENST00000568488 IGFL1Q6UW32 110 aa8.01□□□□□ -1.13
CLK3-223ENST00000568488 MUC12Q9UKN1 5478 aa8.01□□□□□ -1.13
CLK3-223ENST00000568488 TRGC2P03986 189 aa8□□□□□ -1.13
CLK3-223ENST00000568488 F8WEM9 126 aa7.99□□□□□ -1.13
CLK3-223ENST00000568488 HSBP1O75506 76 aa7.99□□□□□ -1.13
CLK3-223ENST00000568488 DPM2O94777 84 aa7.99□□□□□ -1.13
CLK3-223ENST00000568488 PMCHL2Q9BQD1 86 aa7.99□□□□□ -1.13
CLK3-223ENST00000568488 TRBV7-6A0A0J9YX20 115 aa7.98□□□□□ -1.13
CLK3-223ENST00000568488 TRBV7-7A0A0K0K1E9 115 aa7.98□□□□□ -1.13
CLK3-223ENST00000568488 A0A1B0GWB2 263 aa7.97□□□□□ -1.13
CLK3-223ENST00000568488 A8MUU9 505 aa7.97□□□□□ -1.13
CLK3-223ENST00000568488 LINC00518Q8N0U6 118 aa7.97□□□□□ -1.13
CLK3-223ENST00000568488 RBM12B-AS1Q9P1G2 102 aa7.97□□□□□ -1.13
CLK3-223ENST00000568488 IGKCP01834 107 aa7.96□□□□□ -1.14
CLK3-223ENST00000568488 KRTAP20-1Q3LI63 56 aa7.96□□□□□ -1.14
CLK3-223ENST00000568488 LEPROTL1O95214 131 aa7.95□□□□□ -1.14
CLK3-223ENST00000568488 LITAFQ99732 161 aa7.95□□□□□ -1.14
CLK3-223ENST00000568488 LST1O00453 97 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms