RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SEC61BP60468 96 aaKnown RBP10.49□□□□□ -0.73
CLN3-218ENST00000565688 CBY1Q9Y3M2 126 aa10.49□□□□□ -0.73
CLN3-218ENST00000565688 ZNF73O43830 326 aaPredicted RBP10.48□□□□□ -0.73
CLN3-218ENST00000565688 A0A0J9YXY3 114 aa10.47□□□□□ -0.73
CLN3-218ENST00000565688 C5orf52A6NGY3 159 aa10.47□□□□□ -0.73
CLN3-218ENST00000565688 C9orf153Q5TBE3 101 aa10.46□□□□□ -0.73
CLN3-218ENST00000565688 SOSTDC1Q6X4U4 206 aa10.46□□□□□ -0.73
CLN3-218ENST00000565688 E9PLD3 99 aa10.45□□□□□ -0.74
CLN3-218ENST00000565688 HINT1P49773 126 aaPredicted RBP10.45□□□□□ -0.74
CLN3-218ENST00000565688 ADAMTSL4-AS1Q5T5F5 129 aa10.45□□□□□ -0.74
CLN3-218ENST00000565688 NPC2P61916 151 aa10.44□□□□□ -0.74
CLN3-218ENST00000565688 EIF4EBP3O60516 100 aaPredicted RBP10.43□□□□□ -0.74
CLN3-218ENST00000565688 COLCA2A8K830 154 aa10.41□□□□□ -0.74
CLN3-218ENST00000565688 LINC01547P58512 204 aaPredicted RBP10.41□□□□□ -0.74
CLN3-218ENST00000565688 ST20-AS1Q8NBB2 130 aa10.41□□□□□ -0.74
CLN3-218ENST00000565688 SPANXCQ9NY87 97 aa10.41□□□□□ -0.74
CLN3-218ENST00000565688 XP32Q5T750 250 aa10.39□□□□□ -0.75
CLN3-218ENST00000565688 SLC25A34Q6PIV7 304 aa10.39□□□□□ -0.75
CLN3-218ENST00000565688 TIMM17BO60830 172 aa10.38□□□□□ -0.75
CLN3-218ENST00000565688 OR13C6PQ8NH95 151 aa10.38□□□□□ -0.75
CLN3-218ENST00000565688 LINC00308Q8TCZ7 52 aa10.38□□□□□ -0.75
CLN3-218ENST00000565688 KRTAP4-1Q9BYQ7 146 aa10.38□□□□□ -0.75
CLN3-218ENST00000565688 DHRS4-AS1Q9P1J3 65 aa10.38□□□□□ -0.75
CLN3-218ENST00000565688 SYS1-DBNDD2H3BUS1 97 aa10.37□□□□□ -0.75
CLN3-218ENST00000565688 LITAFQ99732 161 aa10.37□□□□□ -0.75
CLN3-218ENST00000565688 SPRR1BP22528 89 aa10.36□□□□□ -0.75
CLN3-218ENST00000565688 LIMD2Q9BT23 127 aa10.35□□□□□ -0.75
CLN3-218ENST00000565688 SPANXDQ9BXN6 97 aa10.35□□□□□ -0.75
CLN3-218ENST00000565688 LINC01545Q5VT33 79 aa10.33□□□□□ -0.76
CLN3-218ENST00000565688 LAMTOR3Q9UHA4 124 aa10.33□□□□□ -0.76
CLN3-218ENST00000565688 KRTAP9-6A0A140TA67 174 aa10.32□□□□□ -0.76
CLN3-218ENST00000565688 SLC7A5P1Q8MH63 180 aa10.32□□□□□ -0.76
CLN3-218ENST00000565688 LINC00518Q8N0U6 118 aa10.32□□□□□ -0.76
CLN3-218ENST00000565688 ZNF815PA8K554 130 aa10.31□□□□□ -0.76
CLN3-218ENST00000565688 PET117Q6UWS5 81 aa10.31□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BKO60814 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BJP06899 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BOP23527 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BBP33778 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BDP58876 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 ELOF1P60002 83 aaKnown RBP10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BCP62807 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST2H2BEQ16778 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BHQ93079 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BNQ99877 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 HIST1H2BMQ99879 126 aa10.3□□□□□ -0.76
CLN3-218ENST00000565688 COX7BP24311 80 aa10.29□□□□□ -0.76
CLN3-218ENST00000565688 HRCT1Q6UXD1 115 aa10.28□□□□□ -0.76
CLN3-218ENST00000565688 C6orf99Q4VX62 202 aa10.27□□□□□ -0.77
CLN3-218ENST00000565688 CD164Q04900 197 aa10.26□□□□□ -0.77
CLN3-218ENST00000565688 TAL2Q16559 108 aa10.26□□□□□ -0.77
CLN3-218ENST00000565688 TRBV7-6A0A0J9YX20 115 aa10.25□□□□□ -0.77
CLN3-218ENST00000565688 COPS9Q8WXC6 57 aa10.25□□□□□ -0.77
CLN3-218ENST00000565688 TEX49A0A1B0GTD5 131 aa10.24□□□□□ -0.77
CLN3-218ENST00000565688 TTTY13Q9BZ97 58 aa10.24□□□□□ -0.77
CLN3-218ENST00000565688 PRO1933Q9H354 126 aa10.24□□□□□ -0.77
CLN3-218ENST00000565688 DEFB105AQ8NG35 78 aa10.23□□□□□ -0.77
CLN3-218ENST00000565688 C3orf79P0CE67 100 aa10.22□□□□□ -0.77
CLN3-218ENST00000565688 Q1RN00 199 aa10.22□□□□□ -0.77
CLN3-218ENST00000565688 SCGB1D4Q6XE38 83 aa10.22□□□□□ -0.77
CLN3-218ENST00000565688 C9orf92A6NGG3 77 aa10.2□□□□□ -0.78
CLN3-218ENST00000565688 H7C2G1 150 aa10.2□□□□□ -0.78
CLN3-218ENST00000565688 A0A1B0GWB2 263 aa10.19□□□□□ -0.78
CLN3-218ENST00000565688 IFITM1P13164 125 aa10.19□□□□□ -0.78
CLN3-218ENST00000565688 PCOTHQ58A44 107 aa10.19□□□□□ -0.78
CLN3-218ENST00000565688 LCE2DQ5TA82 110 aaPredicted RBP10.19□□□□□ -0.78
CLN3-218ENST00000565688 AKR1D1P51857 326 aa10.18□□□□□ -0.78
CLN3-218ENST00000565688 KRTDAPP60985 99 aa10.18□□□□□ -0.78
CLN3-218ENST00000565688 Q5XG85 94 aa10.18□□□□□ -0.78
CLN3-218ENST00000565688 Q6ZVH6 145 aa10.18□□□□□ -0.78
CLN3-218ENST00000565688 C20orf202A1L168 122 aa10.17□□□□□ -0.78
CLN3-218ENST00000565688 A6NDN8 102 aa10.17□□□□□ -0.78
CLN3-218ENST00000565688 LCE2CQ5TA81 110 aa10.17□□□□□ -0.78
CLN3-218ENST00000565688 IGLV8-61A0A075B6I0 122 aa10.16□□□□□ -0.78
CLN3-218ENST00000565688 IGLV5-48A0A075B6I7 105 aa10.16□□□□□ -0.78
CLN3-218ENST00000565688 COA6Q5JTJ3 125 aaKnown RBP10.16□□□□□ -0.78
CLN3-218ENST00000565688 SMIM29Q86T20 159 aa10.16□□□□□ -0.78
CLN3-218ENST00000565688 A4D1N5 150 aa10.15□□□□□ -0.78
CLN3-218ENST00000565688 NHP2Q9NX24 153 aaKnown RBP10.13□□□□□ -0.79
CLN3-218ENST00000565688 KRTAP19-2Q3LHN2 52 aa10.12□□□□□ -0.79
CLN3-218ENST00000565688 ANKRD39Q53RE8 183 aa10.12□□□□□ -0.79
CLN3-218ENST00000565688 C1orf195Q5TG92 126 aa10.11□□□□□ -0.79
CLN3-218ENST00000565688 MUSTN1Q8IVN3 82 aa10.11□□□□□ -0.79
CLN3-218ENST00000565688 TRAV13-2A0A0B4J235 113 aa10.1□□□□□ -0.79
CLN3-218ENST00000565688 ATOH7Q8N100 152 aa10.08□□□□□ -0.8
CLN3-218ENST00000565688 CFC1BP0CG36 223 aa10.07□□□□□ -0.8
CLN3-218ENST00000565688 MT1HP80294 61 aa10.07□□□□□ -0.8
CLN3-218ENST00000565688 PCP2Q8IVA1 136 aa10.07□□□□□ -0.8
CLN3-218ENST00000565688 TCL1BO95988 128 aa10.06□□□□□ -0.8
CLN3-218ENST00000565688 SMIM11BQ8TCY0 68 aa10.06□□□□□ -0.8
CLN3-218ENST00000565688 A0A0G2JQZ4 141 aa10.05□□□□□ -0.8
CLN3-218ENST00000565688 SNRPEP62304 92 aaKnown RBP10.05□□□□□ -0.8
CLN3-218ENST00000565688 VAMP3Q15836 100 aa10.04□□□□□ -0.8
CLN3-218ENST00000565688 F8WEM9 126 aa10.03□□□□□ -0.8
CLN3-218ENST00000565688 RPL37P61927 97 aaKnown RBP10.03□□□□□ -0.8
CLN3-218ENST00000565688 CRCT1Q9UGL9 99 aa10.01□□□□□ -0.81
CLN3-218ENST00000565688 FSIP2Q5CZC0 6907 aa10.01□□□□□ -0.81
CLN3-218ENST00000565688 LINC00575Q6W349 94 aa9.98□□□□□ -0.81
CLN3-218ENST00000565688 Q6JHZ5 121 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms