RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 FRAS1Q86XX4 4008 aa13.53□□□□□ -0.24
CLN3-209ENST00000561689 RPL37AP8A6NKH3 93 aa13.53□□□□□ -0.24
CLN3-209ENST00000561689 ZNF73O43830 326 aaPredicted RBP13.52□□□□□ -0.24
CLN3-209ENST00000561689 LINC00167Q96N53 147 aa13.52□□□□□ -0.25
CLN3-209ENST00000561689 PKIGQ9Y2B9 76 aa13.52□□□□□ -0.25
CLN3-209ENST00000561689 PANO1I0J062 215 aa13.51□□□□□ -0.25
CLN3-209ENST00000561689 MRPL55Q7Z7F7 128 aaKnown RBP13.51□□□□□ -0.25
CLN3-209ENST00000561689 SACSQ9NZJ4 4579 aa13.51□□□□□ -0.25
CLN3-209ENST00000561689 DIRC1Q969H9 104 aa13.51□□□□□ -0.25
CLN3-209ENST00000561689 IGLV5-52A0A0A0MRZ9 124 aa13.5□□□□□ -0.25
CLN3-209ENST00000561689 LCE6AA0A183 80 aa13.49□□□□□ -0.25
CLN3-209ENST00000561689 SIGMAR1Q99720 223 aa13.49□□□□□ -0.25
CLN3-209ENST00000561689 TRACP01848 142 aa13.49□□□□□ -0.25
CLN3-209ENST00000561689 IGLV1-50A0A075B6I6 118 aa13.48□□□□□ -0.25
CLN3-209ENST00000561689 KCNQ1DNQ9H478 68 aa13.48□□□□□ -0.25
CLN3-209ENST00000561689 LINC00474Q9P2X8 69 aa13.47□□□□□ -0.25
CLN3-209ENST00000561689 DPH3Q96FX2 82 aa13.47□□□□□ -0.25
CLN3-209ENST00000561689 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.47□□□□□ -0.25
CLN3-209ENST00000561689 KRTAP10-2P60368 255 aa13.44□□□□□ -0.26
CLN3-209ENST00000561689 DNAL4O96015 105 aa13.43□□□□□ -0.26
CLN3-209ENST00000561689 COX7BP24311 80 aa13.43□□□□□ -0.26
CLN3-209ENST00000561689 LINC00575Q6W349 94 aa13.43□□□□□ -0.26
CLN3-209ENST00000561689 SPACA4Q8TDM5 124 aa13.43□□□□□ -0.26
CLN3-209ENST00000561689 FAT2Q9NYQ8 4349 aa13.42□□□□□ -0.26
CLN3-209ENST00000561689 DNAH11Q96DT5 4516 aa13.42□□□□□ -0.26
CLN3-209ENST00000561689 BAALC-AS2P0C853 105 aa13.41□□□□□ -0.26
CLN3-209ENST00000561689 XGP55808 180 aa13.41□□□□□ -0.26
CLN3-209ENST00000561689 ELOF1P60002 83 aaKnown RBP13.41□□□□□ -0.26
CLN3-209ENST00000561689 PHF5AQ7RTV0 110 aaKnown RBP13.41□□□□□ -0.26
CLN3-209ENST00000561689 TRBV7-6A0A0J9YX20 115 aa13.4□□□□□ -0.26
CLN3-209ENST00000561689 PRYO14603 147 aa13.4□□□□□ -0.26
CLN3-209ENST00000561689 MT-ATP8P03928 68 aa13.4□□□□□ -0.27
CLN3-209ENST00000561689 A0A1B0GX51 115 aa13.38□□□□□ -0.27
CLN3-209ENST00000561689 hADV29S1A0JD25 119 aa13.38□□□□□ -0.27
CLN3-209ENST00000561689 LINC00528Q8N1L1 170 aa13.37□□□□□ -0.27
CLN3-209ENST00000561689 SNCGO76070 127 aa13.36□□□□□ -0.27
CLN3-209ENST00000561689 SPRR1AP35321 89 aa13.36□□□□□ -0.27
CLN3-209ENST00000561689 KRTAP11-1Q8IUC1 163 aa13.36□□□□□ -0.27
CLN3-209ENST00000561689 KRTAP4-16G5E9R7 235 aaPredicted RBP13.35□□□□□ -0.27
CLN3-209ENST00000561689 UBE2BP63146 152 aa13.35□□□□□ -0.27
CLN3-209ENST00000561689 REG3GQ6UW15 175 aa13.35□□□□□ -0.27
CLN3-209ENST00000561689 ETDCA0A1B0GVM5 59 aa13.34□□□□□ -0.27
CLN3-209ENST00000561689 ORMDL1Q9P0S3 153 aa13.33□□□□□ -0.28
CLN3-209ENST00000561689 KMT2CQ8NEZ4 4911 aaKnown RBP13.33□□□□□ -0.28
CLN3-209ENST00000561689 PKD1P98161 4303 aa13.33□□□□□ -0.28
CLN3-209ENST00000561689 DNAH5Q8TE73 4624 aa13.33□□□□□ -0.28
CLN3-209ENST00000561689 B5MCH6 92 aa13.32□□□□□ -0.28
CLN3-209ENST00000561689 Q6ZRX8 168 aa13.31□□□□□ -0.28
CLN3-209ENST00000561689 EPM2AB3EWF7 344 aa13.31□□□□□ -0.28
CLN3-209ENST00000561689 Q6ZQY7 126 aa13.31□□□□□ -0.28
CLN3-209ENST00000561689 RYR2Q92736 4967 aa13.3□□□□□ -0.28
CLN3-209ENST00000561689 SCGB1A1P11684 91 aa13.29□□□□□ -0.28
CLN3-209ENST00000561689 Q9BRP9 147 aa13.28□□□□□ -0.28
CLN3-209ENST00000561689 PLAC8Q9NZF1 115 aa13.28□□□□□ -0.28
CLN3-209ENST00000561689 FAM30AQ9NZY2 134 aa13.27□□□□□ -0.29
CLN3-209ENST00000561689 KRTAP10-1P60331 282 aa13.25□□□□□ -0.29
CLN3-209ENST00000561689 FAM19A1Q7Z5A9 133 aa13.25□□□□□ -0.29
CLN3-209ENST00000561689 FAM240AA0A1B0GVK7 77 aa13.25□□□□□ -0.29
CLN3-209ENST00000561689 INAFM2P0DMQ5 153 aa13.25□□□□□ -0.29
CLN3-209ENST00000561689 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.25□□□□□ -0.29
CLN3-209ENST00000561689 LINC00336Q6ZUF6 198 aa13.24□□□□□ -0.29
CLN3-209ENST00000561689 DHRS4-AS1Q9P1J3 65 aa13.24□□□□□ -0.29
CLN3-209ENST00000561689 TMEM256-PLSCR3K7ERE1 68 aa13.23□□□□□ -0.29
CLN3-209ENST00000561689 PRLHP81277 87 aa13.23□□□□□ -0.29
CLN3-209ENST00000561689 DNAH8Q96JB1 4490 aa13.21□□□□□ -0.29
CLN3-209ENST00000561689 A0A1B0GV72 72 aa13.21□□□□□ -0.29
CLN3-209ENST00000561689 ERC2-IT1O76042 136 aa13.2□□□□□ -0.3
CLN3-209ENST00000561689 SMCR5Q8TEV8 140 aa13.2□□□□□ -0.3
CLN3-209ENST00000561689 OBSCN-AS1Q96MR7 158 aa13.19□□□□□ -0.3
CLN3-209ENST00000561689 CIRBP-AS1Q8TBR5 109 aa13.18□□□□□ -0.3
CLN3-209ENST00000561689 C14orf132Q9NPU4 83 aa13.18□□□□□ -0.3
CLN3-209ENST00000561689 DEFB105AQ8NG35 78 aa13.18□□□□□ -0.3
CLN3-209ENST00000561689 HAMPP81172 84 aa13.17□□□□□ -0.3
CLN3-209ENST00000561689 Q6ZSA8 131 aa13.17□□□□□ -0.3
CLN3-209ENST00000561689 BCE1O60756 84 aa13.16□□□□□ -0.3
CLN3-209ENST00000561689 ST20-AS1Q8NBB2 130 aa13.16□□□□□ -0.3
CLN3-209ENST00000561689 HIGD2AQ9BW72 106 aa13.16□□□□□ -0.3
CLN3-209ENST00000561689 UBE2AP49459 152 aa13.15□□□□□ -0.3
CLN3-209ENST00000561689 GAGE2AQ6NT46 116 aa13.15□□□□□ -0.3
CLN3-209ENST00000561689 SCXQ7RTU7 201 aa13.15□□□□□ -0.3
CLN3-209ENST00000561689 PKHD1P08F94 4074 aa13.15□□□□□ -0.31
CLN3-209ENST00000561689 ACYP1P07311 99 aa13.14□□□□□ -0.31
CLN3-209ENST00000561689 LAMTOR3Q9UHA4 124 aa13.14□□□□□ -0.31
CLN3-209ENST00000561689 PSORS1C2Q9UIG4 136 aa13.14□□□□□ -0.31
CLN3-209ENST00000561689 A0A1B0GVY2 172 aa13.12□□□□□ -0.31
CLN3-209ENST00000561689 H3BQ85 93 aa13.12□□□□□ -0.31
CLN3-209ENST00000561689 GHRHP01286 108 aa13.12□□□□□ -0.31
CLN3-209ENST00000561689 H0Y9J4 135 aa13.12□□□□□ -0.31
CLN3-209ENST00000561689 LINC01547P58512 204 aaPredicted RBP13.12□□□□□ -0.31
CLN3-209ENST00000561689 Q8N377 158 aa13.11□□□□□ -0.31
CLN3-209ENST00000561689 SRRM2Q9UQ35 2752 aaKnown RBP13.1□□□□□ -0.31
CLN3-209ENST00000561689 JMJD7-PLA2G4BH0Y9G9 81 aa13.09□□□□□ -0.31
CLN3-209ENST00000561689 C1orf137Q5JT78 98 aa13.09□□□□□ -0.31
CLN3-209ENST00000561689 KRTAP13-1Q8IUC0 172 aa13.09□□□□□ -0.31
CLN3-209ENST00000561689 NDUFV3P56181 108 aaKnown RBP13.07□□□□□ -0.32
CLN3-209ENST00000561689 IGLV5-48A0A075B6I7 105 aa13.07□□□□□ -0.32
CLN3-209ENST00000561689 C3orf22Q8N5N4 141 aa13.05□□□□□ -0.32
CLN3-209ENST00000561689 RBM3P98179 157 aaKnown RBP13.05□□□□□ -0.32
CLN3-209ENST00000561689 Q6Q795 121 aa13.04□□□□□ -0.32
CLN3-209ENST00000561689 RYR3Q15413 4870 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms