RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SOSTDC1Q6X4U4 206 aa8.89□□□□□ -0.99
CLN3-208ENST00000561505 KRTAP10-6P60371 365 aaPredicted RBP8.88□□□□□ -0.99
CLN3-208ENST00000561505 S100A7L2Q5SY68 101 aa8.88□□□□□ -0.99
CLN3-208ENST00000561505 IGLV8-61A0A075B6I0 122 aa8.87□□□□□ -0.99
CLN3-208ENST00000561505 HSBP1O75506 76 aa8.87□□□□□ -0.99
CLN3-208ENST00000561505 PLNP26678 52 aa8.87□□□□□ -0.99
CLN3-208ENST00000561505 LIMD2Q9BT23 127 aa8.87□□□□□ -0.99
CLN3-208ENST00000561505 MIEN1Q9BRT3 115 aa8.86□□□□□ -0.99
CLN3-208ENST00000561505 SNAPINO95295 136 aa8.85□□□□□ -0.99
CLN3-208ENST00000561505 APOC3P02656 99 aa8.85□□□□□ -0.99
CLN3-208ENST00000561505 LINC00310P59036 64 aa8.85□□□□□ -0.99
CLN3-208ENST00000561505 ADAMTSL4-AS1Q5T5F5 129 aa8.85□□□□□ -0.99
CLN3-208ENST00000561505 CD164Q04900 197 aa8.84□□□□□ -0.99
CLN3-208ENST00000561505 Q5XG85 94 aa8.84□□□□□ -0.99
CLN3-208ENST00000561505 SVBPQ8N300 66 aa8.84□□□□□ -0.99
CLN3-208ENST00000561505 CBY1Q9Y3M2 126 aa8.84□□□□□ -0.99
CLN3-208ENST00000561505 LEPROTL1O95214 131 aa8.83□□□□□ -1
CLN3-208ENST00000561505 SLC25A34Q6PIV7 304 aa8.83□□□□□ -1
CLN3-208ENST00000561505 DPM2O94777 84 aa8.82□□□□□ -1
CLN3-208ENST00000561505 A0A0J9YXY3 114 aa8.81□□□□□ -1
CLN3-208ENST00000561505 HERVK_113P61574 105 aa8.81□□□□□ -1
CLN3-208ENST00000561505 DHRS4-AS1Q9P1J3 65 aa8.81□□□□□ -1
CLN3-208ENST00000561505 C9orf92A6NGG3 77 aa8.8□□□□□ -1
CLN3-208ENST00000561505 LGALS3P17931 250 aaKnown RBP8.8□□□□□ -1
CLN3-208ENST00000561505 HINT1P49773 126 aaPredicted RBP8.8□□□□□ -1
CLN3-208ENST00000561505 H0Y8G0 127 aa8.79□□□□□ -1
CLN3-208ENST00000561505 IGKCP01834 107 aa8.79□□□□□ -1
CLN3-208ENST00000561505 LITAFQ99732 161 aa8.79□□□□□ -1
CLN3-208ENST00000561505 FLGP20930 4061 aaPredicted RBP8.79□□□□□ -1
CLN3-208ENST00000561505 SERF1AO75920 110 aa8.78□□□□□ -1
CLN3-208ENST00000561505 LAMTOR3Q9UHA4 124 aa8.78□□□□□ -1
CLN3-208ENST00000561505 E9PLD3 99 aa8.77□□□□□ -1.01
CLN3-208ENST00000561505 NDUFA5Q16718 116 aa8.77□□□□□ -1.01
CLN3-208ENST00000561505 SPANXCQ9NY87 97 aa8.77□□□□□ -1.01
CLN3-208ENST00000561505 HSPB8Q9UJY1 196 aa8.77□□□□□ -1.01
CLN3-208ENST00000561505 ELOF1P60002 83 aaKnown RBP8.76□□□□□ -1.01
CLN3-208ENST00000561505 HRCT1Q6UXD1 115 aa8.76□□□□□ -1.01
CLN3-208ENST00000561505 LINC00308Q8TCZ7 52 aa8.76□□□□□ -1.01
CLN3-208ENST00000561505 TRGC2P03986 189 aa8.75□□□□□ -1.01
CLN3-208ENST00000561505 NPC2P61916 151 aa8.75□□□□□ -1.01
CLN3-208ENST00000561505 PMCHL2Q9BQD1 86 aa8.75□□□□□ -1.01
CLN3-208ENST00000561505 TIMM17BO60830 172 aa8.74□□□□□ -1.01
CLN3-208ENST00000561505 RPL37P61927 97 aaKnown RBP8.74□□□□□ -1.01
CLN3-208ENST00000561505 C1orf195Q5TG92 126 aa8.74□□□□□ -1.01
CLN3-208ENST00000561505 PRO1933Q9H354 126 aa8.74□□□□□ -1.01
CLN3-208ENST00000561505 SMIM29Q86T20 159 aa8.73□□□□□ -1.01
CLN3-208ENST00000561505 SPANXDQ9BXN6 97 aa8.73□□□□□ -1.01
CLN3-208ENST00000561505 TRBV7-6A0A0J9YX20 115 aa8.71□□□□□ -1.02
CLN3-208ENST00000561505 FABP4P15090 132 aa8.71□□□□□ -1.02
CLN3-208ENST00000561505 TEX49A0A1B0GTD5 131 aa8.7□□□□□ -1.02
CLN3-208ENST00000561505 H7C2G1 150 aa8.7□□□□□ -1.02
CLN3-208ENST00000561505 COX7BP24311 80 aa8.7□□□□□ -1.02
CLN3-208ENST00000561505 IGLV5-48A0A075B6I7 105 aa8.69□□□□□ -1.02
CLN3-208ENST00000561505 AKR1D1P51857 326 aa8.69□□□□□ -1.02
CLN3-208ENST00000561505 C6orf99Q4VX62 202 aa8.69□□□□□ -1.02
CLN3-208ENST00000561505 LINC00518Q8N0U6 118 aa8.69□□□□□ -1.02
CLN3-208ENST00000561505 OR13C6PQ8NH95 151 aa8.69□□□□□ -1.02
CLN3-208ENST00000561505 TAL2Q16559 108 aa8.68□□□□□ -1.02
CLN3-208ENST00000561505 Q1RN00 199 aa8.68□□□□□ -1.02
CLN3-208ENST00000561505 M0R2T5 61 aa8.66□□□□□ -1.02
CLN3-208ENST00000561505 SYS1-DBNDD2H3BUS1 97 aa8.63□□□□□ -1.03
CLN3-208ENST00000561505 DEFB105AQ8NG35 78 aa8.63□□□□□ -1.03
CLN3-208ENST00000561505 COX6B2Q6YFQ2 88 aa8.62□□□□□ -1.03
CLN3-208ENST00000561505 A0A1B0GWB2 263 aa8.61□□□□□ -1.03
CLN3-208ENST00000561505 LINC01545Q5VT33 79 aa8.61□□□□□ -1.03
CLN3-208ENST00000561505 A0A0G2JQZ4 141 aa8.6□□□□□ -1.03
CLN3-208ENST00000561505 COLCA2A8K830 154 aa8.6□□□□□ -1.03
CLN3-208ENST00000561505 ZNF815PA8K554 130 aa8.59□□□□□ -1.03
CLN3-208ENST00000561505 TTTY13Q9BZ97 58 aa8.58□□□□□ -1.04
CLN3-208ENST00000561505 A4D1N5 150 aa8.56□□□□□ -1.04
CLN3-208ENST00000561505 TCL1BO95988 128 aa8.56□□□□□ -1.04
CLN3-208ENST00000561505 PET117Q6UWS5 81 aa8.56□□□□□ -1.04
CLN3-208ENST00000561505 IFITM1P13164 125 aa8.54□□□□□ -1.04
CLN3-208ENST00000561505 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.53□□□□□ -1.04
CLN3-208ENST00000561505 Q6ZVH6 145 aa8.52□□□□□ -1.05
CLN3-208ENST00000561505 KRTAP9-8Q9BYQ0 159 aa8.52□□□□□ -1.05
CLN3-208ENST00000561505 KRTAP9-7A8MTY7 169 aa8.51□□□□□ -1.05
CLN3-208ENST00000561505 Q75L30 129 aa8.51□□□□□ -1.05
CLN3-208ENST00000561505 COPS9Q8WXC6 57 aa8.51□□□□□ -1.05
CLN3-208ENST00000561505 NHP2Q9NX24 153 aaKnown RBP8.51□□□□□ -1.05
CLN3-208ENST00000561505 USH2AO75445 5202 aa8.5□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BKO60814 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BJP06899 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BOP23527 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BBP33778 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BDP58876 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BCP62807 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST2H2BEQ16778 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BHQ93079 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BNQ99877 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 HIST1H2BMQ99879 126 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 SSPOA2VEC9 5147 aa8.49□□□□□ -1.05
CLN3-208ENST00000561505 A6NDN8 102 aa8.48□□□□□ -1.05
CLN3-208ENST00000561505 C3orf79P0CE67 100 aa8.48□□□□□ -1.05
CLN3-208ENST00000561505 MUSTN1Q8IVN3 82 aa8.47□□□□□ -1.05
CLN3-208ENST00000561505 SMIM11BQ8TCY0 68 aa8.47□□□□□ -1.05
CLN3-208ENST00000561505 TRBV7-7A0A0K0K1E9 115 aa8.46□□□□□ -1.06
CLN3-208ENST00000561505 CFC1P0CG37 223 aa8.46□□□□□ -1.06
CLN3-208ENST00000561505 Q6JHZ5 121 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms