RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 HTN1P15515 57 aa4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 USP9XQ93008 2570 aaPredicted RBP4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 UTP20O75691 2785 aaKnown RBP4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 TRBV6-8A0A0A6YYG3 113 aa4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 A6NN06 94 aa4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 CELSR1Q9NYQ6 3014 aa4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 IGHV3-11P01762 117 aa4.43□□□□□ -1.7
TSPAN3-209ENST00000560715 TEX15Q9BXT5 2789 aa4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 GIG44P09565 113 aaPredicted RBP4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 KRTAP10-9P60411 292 aa4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 LINC01554Q52M75 96 aa4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 CRYBG3Q68DQ2 2970 aa4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 Q8N9L7 120 aa4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 MAPK1IP1LQ8NDC0 245 aa4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 ZCCHC13Q8WW36 166 aaKnown RBP4.42□□□□□ -1.7
TSPAN3-209ENST00000560715 CSMD2Q7Z408 3487 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 CHKB-CPT1BH3BT56 60 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 SPTSSBQ8NFR3 76 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 CELSR2Q9HCU4 2923 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 HCG22E2RYF7 251 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 C7orf65Q6ZTY9 151 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 DIRC1Q969H9 104 aa4.41□□□□□ -1.7
TSPAN3-209ENST00000560715 SPTAN1Q13813 2472 aaKnown RBP4.4□□□□□ -1.7
TSPAN3-209ENST00000560715 ANKRD17O75179 2603 aaKnown RBP4.4□□□□□ -1.7
TSPAN3-209ENST00000560715 UNC79Q9P2D8 2635 aa4.4□□□□□ -1.7
TSPAN3-209ENST00000560715 FBN2P35556 2912 aa4.4□□□□□ -1.71
TSPAN3-209ENST00000560715 LIMD2Q9BT23 127 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 A8MWP4 228 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 Q6ZQY7 126 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 KRTAP1-3Q8IUG1 177 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 IGLV4-60A0A075B6I1 120 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 LINC00612Q8N6U2 182 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 SPG11Q96JI7 2443 aa4.39□□□□□ -1.71
TSPAN3-209ENST00000560715 COX7BP24311 80 aa4.38□□□□□ -1.71
TSPAN3-209ENST00000560715 DEFB114Q30KQ6 69 aa4.38□□□□□ -1.71
TSPAN3-209ENST00000560715 TYMSOSQ8TAI1 123 aa4.38□□□□□ -1.71
TSPAN3-209ENST00000560715 C10orf99Q6UWK7 81 aa4.38□□□□□ -1.71
TSPAN3-209ENST00000560715 MYO9AB2RTY4 2548 aa4.38□□□□□ -1.71
TSPAN3-209ENST00000560715 A0A1B0GVX0 72 aa4.37□□□□□ -1.71
TSPAN3-209ENST00000560715 C16orf74Q96GX8 76 aa4.37□□□□□ -1.71
TSPAN3-209ENST00000560715 IGKV3OR2-268A0A0C4DH90 116 aa4.37□□□□□ -1.71
TSPAN3-209ENST00000560715 Q8N9P0 234 aaPredicted RBP4.37□□□□□ -1.71
TSPAN3-209ENST00000560715 B9D2Q9BPU9 175 aa4.37□□□□□ -1.71
TSPAN3-209ENST00000560715 ITPR2Q14571 2701 aa4.37□□□□□ -1.71
TSPAN3-209ENST00000560715 A8MTW9 85 aa4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 KRTAP21-3Q3LHN1 58 aa4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 Q8IZM0 81 aa4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 CSPG4Q6UVK1 2322 aa4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 ZNF469Q96JG9 3925 aaPredicted RBP4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 COX17Q14061 63 aa4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 NOTCH2Q04721 2471 aa4.36□□□□□ -1.71
TSPAN3-209ENST00000560715 TRGV2A0A075B6R0 118 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 A0A1B0GUV1 79 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 NDUFB1O75438 58 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 PRR15LQ9BU68 103 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 AKAP9Q99996 3911 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 SORL1Q92673 2214 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 ELOF1P60002 83 aaKnown RBP4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 CAMK2N1Q7Z7J9 78 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 CDC42SE1Q9NRR8 79 aa4.35□□□□□ -1.71
TSPAN3-209ENST00000560715 CREBBPQ92793 2442 aa4.34□□□□□ -1.71
TSPAN3-209ENST00000560715 ETDCA0A1B0GVM5 59 aa4.34□□□□□ -1.71
TSPAN3-209ENST00000560715 Q8NDZ9 215 aa4.34□□□□□ -1.71
TSPAN3-209ENST00000560715 C4orf3Q8WVX3 66 aa4.34□□□□□ -1.71
TSPAN3-209ENST00000560715 KRTAP15-1Q3LI76 137 aa4.34□□□□□ -1.72
TSPAN3-209ENST00000560715 ABCA12Q86UK0 2595 aa4.33□□□□□ -1.72
TSPAN3-209ENST00000560715 MAP1AP78559 2803 aaPredicted RBP4.33□□□□□ -1.72
TSPAN3-209ENST00000560715 LOC101927531A0A1B0GV80 90 aa4.33□□□□□ -1.72
TSPAN3-209ENST00000560715 IGLV6-57P01721 117 aa4.33□□□□□ -1.72
TSPAN3-209ENST00000560715 LINC00959A0A1B0GUT2 108 aa4.33□□□□□ -1.72
TSPAN3-209ENST00000560715 HIGD2BQ4VC39 106 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 CENPEQ02224 2701 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 TEP1Q99973 2627 aaKnown RBP4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 OTOGQ6ZRI0 2925 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 TRGV1A0A0A0MS02 117 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 TRGV4A0A0C4DH28 118 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 PRB2P02812 416 aaPredicted RBP4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 MOBPQ13875 183 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 Q9BRP9 147 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 KLK12Q9UKR0 248 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 APCP25054 2843 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 PDZD2O15018 2839 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 ZANQ9Y493 2812 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 DEFB131AP59861 70 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 LINC00208Q96KT6 92 aa4.32□□□□□ -1.72
TSPAN3-209ENST00000560715 MXRA5Q9NR99 2828 aa4.31□□□□□ -1.72
TSPAN3-209ENST00000560715 DEFB136Q30KP8 78 aa4.31□□□□□ -1.72
TSPAN3-209ENST00000560715 ST20-AS1Q8NBB2 130 aa4.31□□□□□ -1.72
TSPAN3-209ENST00000560715 POLQO75417 2590 aa4.31□□□□□ -1.72
TSPAN3-209ENST00000560715 KRTAP1-1Q07627 177 aa4.31□□□□□ -1.72
TSPAN3-209ENST00000560715 K7ERS5 55 aa4.3□□□□□ -1.72
TSPAN3-209ENST00000560715 SPANXA2-OT1Q8N9U9 137 aa4.3□□□□□ -1.72
TSPAN3-209ENST00000560715 C3orf84H3BNL1 204 aa4.29□□□□□ -1.72
TSPAN3-209ENST00000560715 C9orf116Q5BN46 136 aaPredicted RBP4.29□□□□□ -1.72
TSPAN3-209ENST00000560715 ANK3Q12955 4377 aaKnown RBP4.29□□□□□ -1.72
TSPAN3-209ENST00000560715 A0A1B0GW54 56 aa4.28□□□□□ -1.72
TSPAN3-209ENST00000560715 F8P00451 2351 aa4.28□□□□□ -1.72
TSPAN3-209ENST00000560715 CUBNO60494 3623 aa4.28□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms