RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SSBP3-AS1Q7Z2R9 100 aa5.77□□□□□ -1.49
LDLR-214ENST00000560628 TRAV23DV6A0A075B6W5 121 aa5.76□□□□□ -1.49
LDLR-214ENST00000560628 KRTAP13-3Q3SY46 172 aa5.76□□□□□ -1.49
LDLR-214ENST00000560628 SYS1-DBNDD2H3BUS1 97 aa5.75□□□□□ -1.49
LDLR-214ENST00000560628 ZNF73O43830 326 aaPredicted RBP5.75□□□□□ -1.49
LDLR-214ENST00000560628 JOSD1Q15040 202 aaPredicted RBP5.75□□□□□ -1.49
LDLR-214ENST00000560628 LCE2AQ5TA79 106 aaPredicted RBP5.75□□□□□ -1.49
LDLR-214ENST00000560628 ST20-AS1Q8NBB2 130 aa5.75□□□□□ -1.49
LDLR-214ENST00000560628 C9orf153Q5TBE3 101 aa5.74□□□□□ -1.49
LDLR-214ENST00000560628 OR13C6PQ8NH95 151 aa5.74□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BKO60814 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BJP06899 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BOP23527 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BBP33778 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BDP58876 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BCP62807 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST2H2BEQ16778 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.73□□□□□ -1.49
LDLR-214ENST00000560628 Q8N377 158 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 LINC00308Q8TCZ7 52 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BHQ93079 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 LITAFQ99732 161 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BNQ99877 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 HIST1H2BMQ99879 126 aa5.73□□□□□ -1.49
LDLR-214ENST00000560628 MUC17Q685J3 4493 aa5.72□□□□□ -1.49
LDLR-214ENST00000560628 HINT1P49773 126 aaPredicted RBP5.72□□□□□ -1.49
LDLR-214ENST00000560628 TTTY13Q9BZ97 58 aa5.72□□□□□ -1.49
LDLR-214ENST00000560628 ZNF815PA8K554 130 aa5.71□□□□□ -1.5
LDLR-214ENST00000560628 SLC25A20O43772 301 aa5.71□□□□□ -1.5
LDLR-214ENST00000560628 LINC01545Q5VT33 79 aa5.71□□□□□ -1.5
LDLR-214ENST00000560628 SPANXCQ9NY87 97 aa5.71□□□□□ -1.5
LDLR-214ENST00000560628 FAT4Q6V0I7 4981 aa5.71□□□□□ -1.5
LDLR-214ENST00000560628 TIMM17BO60830 172 aa5.7□□□□□ -1.5
LDLR-214ENST00000560628 RPS29P62273 56 aaKnown RBP5.7□□□□□ -1.5
LDLR-214ENST00000560628 ASB16-AS1Q495Z4 193 aa5.7□□□□□ -1.5
LDLR-214ENST00000560628 PET117Q6UWS5 81 aa5.7□□□□□ -1.5
LDLR-214ENST00000560628 KRTAP9-2Q9BYQ4 174 aa5.7□□□□□ -1.5
LDLR-214ENST00000560628 CBY1Q9Y3M2 126 aa5.7□□□□□ -1.5
LDLR-214ENST00000560628 C3orf79P0CE67 100 aa5.69□□□□□ -1.5
LDLR-214ENST00000560628 HRCT1Q6UXD1 115 aa5.69□□□□□ -1.5
LDLR-214ENST00000560628 KRTAP4-1Q9BYQ7 146 aa5.69□□□□□ -1.5
LDLR-214ENST00000560628 C5orf52A6NGY3 159 aa5.68□□□□□ -1.5
LDLR-214ENST00000560628 SEC61BP60468 96 aaKnown RBP5.68□□□□□ -1.5
LDLR-214ENST00000560628 KRTDAPP60985 99 aa5.68□□□□□ -1.5
LDLR-214ENST00000560628 C6orf99Q4VX62 202 aa5.67□□□□□ -1.5
LDLR-214ENST00000560628 DEFB105AQ8NG35 78 aa5.67□□□□□ -1.5
LDLR-214ENST00000560628 SPANXDQ9BXN6 97 aa5.67□□□□□ -1.5
LDLR-214ENST00000560628 DHRS4-AS1Q9P1J3 65 aa5.67□□□□□ -1.5
LDLR-214ENST00000560628 SPRR1BP22528 89 aa5.66□□□□□ -1.5
LDLR-214ENST00000560628 COX7BP24311 80 aa5.66□□□□□ -1.5
LDLR-214ENST00000560628 TAL2Q16559 108 aa5.66□□□□□ -1.5
LDLR-214ENST00000560628 LINC00518Q8N0U6 118 aa5.66□□□□□ -1.5
LDLR-214ENST00000560628 SLC25A34Q6PIV7 304 aa5.65□□□□□ -1.5
LDLR-214ENST00000560628 SCGB1D4Q6XE38 83 aa5.65□□□□□ -1.5
LDLR-214ENST00000560628 LAMTOR3Q9UHA4 124 aa5.65□□□□□ -1.5
LDLR-214ENST00000560628 ELOF1P60002 83 aaKnown RBP5.64□□□□□ -1.51
LDLR-214ENST00000560628 Q1RN00 199 aa5.64□□□□□ -1.51
LDLR-214ENST00000560628 ANKRD39Q53RE8 183 aa5.64□□□□□ -1.51
LDLR-214ENST00000560628 XP32Q5T750 250 aa5.64□□□□□ -1.51
LDLR-214ENST00000560628 ATOH7Q8N100 152 aa5.64□□□□□ -1.51
LDLR-214ENST00000560628 LINC01547P58512 204 aaPredicted RBP5.63□□□□□ -1.51
LDLR-214ENST00000560628 COA6Q5JTJ3 125 aaKnown RBP5.63□□□□□ -1.51
LDLR-214ENST00000560628 A6NDN8 102 aa5.62□□□□□ -1.51
LDLR-214ENST00000560628 MUSTN1Q8IVN3 82 aa5.62□□□□□ -1.51
LDLR-214ENST00000560628 TEX49A0A1B0GTD5 131 aa5.61□□□□□ -1.51
LDLR-214ENST00000560628 C20orf202A1L168 122 aa5.61□□□□□ -1.51
LDLR-214ENST00000560628 PCP2Q8IVA1 136 aa5.61□□□□□ -1.51
LDLR-214ENST00000560628 LIMD2Q9BT23 127 aa5.61□□□□□ -1.51
LDLR-214ENST00000560628 A0A0G2JQZ4 141 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 TRBV7-6A0A0J9YX20 115 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 C9orf92A6NGG3 77 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 H7C2G1 150 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 IFITM1P13164 125 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 SMIM29Q86T20 159 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 PRO1933Q9H354 126 aa5.6□□□□□ -1.51
LDLR-214ENST00000560628 A0A1B0GWB2 263 aa5.59□□□□□ -1.51
LDLR-214ENST00000560628 COPS9Q8WXC6 57 aa5.59□□□□□ -1.51
LDLR-214ENST00000560628 AKR1D1P51857 326 aa5.58□□□□□ -1.52
LDLR-214ENST00000560628 PCOTHQ58A44 107 aa5.58□□□□□ -1.52
LDLR-214ENST00000560628 Q6ZVH6 145 aa5.58□□□□□ -1.52
LDLR-214ENST00000560628 KRTAP9-6A0A140TA67 174 aa5.57□□□□□ -1.52
LDLR-214ENST00000560628 CD164Q04900 197 aa5.57□□□□□ -1.52
LDLR-214ENST00000560628 SMIM11BQ8TCY0 68 aa5.57□□□□□ -1.52
LDLR-214ENST00000560628 IGLV5-48A0A075B6I7 105 aa5.56□□□□□ -1.52
LDLR-214ENST00000560628 C21orf62-AS1Q17RA5 79 aa5.56□□□□□ -1.52
LDLR-214ENST00000560628 IGLV8-61A0A075B6I0 122 aa5.55□□□□□ -1.52
LDLR-214ENST00000560628 TRAV13-2A0A0B4J235 113 aa5.55□□□□□ -1.52
LDLR-214ENST00000560628 C1orf195Q5TG92 126 aa5.55□□□□□ -1.52
LDLR-214ENST00000560628 A4D1N5 150 aa5.54□□□□□ -1.52
LDLR-214ENST00000560628 LCE2CQ5TA81 110 aa5.54□□□□□ -1.52
LDLR-214ENST00000560628 SNRPEP62304 92 aaKnown RBP5.53□□□□□ -1.52
LDLR-214ENST00000560628 VAMP3Q15836 100 aa5.52□□□□□ -1.53
LDLR-214ENST00000560628 Q5XG85 94 aa5.52□□□□□ -1.53
LDLR-214ENST00000560628 HIST3H2BBQ8N257 126 aa5.52□□□□□ -1.53
LDLR-214ENST00000560628 NHP2Q9NX24 153 aaKnown RBP5.52□□□□□ -1.53
LDLR-214ENST00000560628 S100A2P29034 98 aa5.51□□□□□ -1.53
LDLR-214ENST00000560628 KRTAP19-2Q3LHN2 52 aa5.51□□□□□ -1.53
LDLR-214ENST00000560628 HIST1H2BLQ99880 126 aa5.51□□□□□ -1.53
LDLR-214ENST00000560628 HSBP1L1C9JCN9 74 aa5.5□□□□□ -1.53
LDLR-214ENST00000560628 LINC00575Q6W349 94 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms