RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 SPINK7P58062 85 aa9.04□□□□□ -0.96
CSPG4P12-202ENST00000559989 PRR26Q8N8Z3 221 aa9.03□□□□□ -0.96
CSPG4P12-202ENST00000559989 ZFHX2Q9C0A1 2572 aaPredicted RBP9.03□□□□□ -0.96
CSPG4P12-202ENST00000559989 ACACBO00763 2458 aa9.01□□□□□ -0.97
CSPG4P12-202ENST00000559989 M0R2T5 61 aa9.01□□□□□ -0.97
CSPG4P12-202ENST00000559989 SPRR4Q96PI1 79 aa9□□□□□ -0.97
CSPG4P12-202ENST00000559989 IGLV7-46A0A075B6I9 117 aa8.99□□□□□ -0.97
CSPG4P12-202ENST00000559989 S4R3F8 94 aa8.98□□□□□ -0.97
CSPG4P12-202ENST00000559989 A0A0G2JQZ4 141 aa8.98□□□□□ -0.97
CSPG4P12-202ENST00000559989 A0A1W2PNN7 141 aa8.98□□□□□ -0.97
CSPG4P12-202ENST00000559989 CSAG1Q6PB30 78 aa8.98□□□□□ -0.97
CSPG4P12-202ENST00000559989 A0A1W2PPR1 153 aa8.97□□□□□ -0.97
CSPG4P12-202ENST00000559989 ANAPC11Q9NYG5 84 aa8.97□□□□□ -0.97
CSPG4P12-202ENST00000559989 F8P00451 2351 aa8.96□□□□□ -0.97
CSPG4P12-202ENST00000559989 A0A087WTM6 91 aa8.95□□□□□ -0.98
CSPG4P12-202ENST00000559989 PSORS1C2Q9UIG4 136 aa8.94□□□□□ -0.98
CSPG4P12-202ENST00000559989 SMR3BP02814 79 aaPredicted RBP8.94□□□□□ -0.98
CSPG4P12-202ENST00000559989 PRR34Q9NV39 138 aa8.93□□□□□ -0.98
CSPG4P12-202ENST00000559989 COL4A2P08572 1712 aa8.92□□□□□ -0.98
CSPG4P12-202ENST00000559989 OCR1Q9BZK8 76 aa8.92□□□□□ -0.98
CSPG4P12-202ENST00000559989 ACANP16112 2415 aa8.92□□□□□ -0.98
CSPG4P12-202ENST00000559989 CACNA1AO00555 2505 aa8.91□□□□□ -0.98
CSPG4P12-202ENST00000559989 MYO18BQ8IUG5 2567 aa8.9□□□□□ -0.98
CSPG4P12-202ENST00000559989 LINC01558Q9Y6Z2 57 aa8.9□□□□□ -0.99
CSPG4P12-202ENST00000559989 CUL9Q8IWT3 2517 aa8.9□□□□□ -0.99
CSPG4P12-202ENST00000559989 A0A1W2PNM2 257 aa8.89□□□□□ -0.99
CSPG4P12-202ENST00000559989 KRTAP24-1Q3LI83 254 aa8.88□□□□□ -0.99
CSPG4P12-202ENST00000559989 FN1P02751 2386 aaKnown RBP8.88□□□□□ -0.99
CSPG4P12-202ENST00000559989 PRAC1Q96KF2 57 aa8.88□□□□□ -0.99
CSPG4P12-202ENST00000559989 H1FX-AS1Q4G0G2 97 aa8.87□□□□□ -0.99
CSPG4P12-202ENST00000559989 ROMO1P60602 79 aa8.87□□□□□ -0.99
CSPG4P12-202ENST00000559989 TTC28Q96AY4 2481 aa8.86□□□□□ -0.99
CSPG4P12-202ENST00000559989 CNBPP62633 177 aaKnown RBP8.84□□□□□ -0.99
CSPG4P12-202ENST00000559989 KRTAP16-1A8MUX0 517 aa8.83□□□□□ -1
CSPG4P12-202ENST00000559989 Q8N9P0 234 aaPredicted RBP8.83□□□□□ -1
CSPG4P12-202ENST00000559989 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.83□□□□□ -1
CSPG4P12-202ENST00000559989 R4GN34 69 aa8.83□□□□□ -1
CSPG4P12-202ENST00000559989 EIF4EBP3O60516 100 aaPredicted RBP8.81□□□□□ -1
CSPG4P12-202ENST00000559989 FAM229BQ4G0N7 80 aa8.8□□□□□ -1
CSPG4P12-202ENST00000559989 C19orf73Q9NVV2 129 aa8.79□□□□□ -1
CSPG4P12-202ENST00000559989 TNP2Q05952 138 aa8.78□□□□□ -1
CSPG4P12-202ENST00000559989 LINC00612Q8N6U2 182 aa8.78□□□□□ -1
CSPG4P12-202ENST00000559989 ZCCHC13Q8WW36 166 aaKnown RBP8.78□□□□□ -1
CSPG4P12-202ENST00000559989 NOTCH2Q04721 2471 aa8.77□□□□□ -1.01
CSPG4P12-202ENST00000559989 NAV2Q8IVL1 2488 aa8.77□□□□□ -1.01
CSPG4P12-202ENST00000559989 KRTAP10-11P60412 298 aa8.75□□□□□ -1.01
CSPG4P12-202ENST00000559989 PLAC4Q8WY50 150 aa8.75□□□□□ -1.01
CSPG4P12-202ENST00000559989 Q5VV11 94 aa8.75□□□□□ -1.01
CSPG4P12-202ENST00000559989 RPL37P61927 97 aaKnown RBP8.74□□□□□ -1.01
CSPG4P12-202ENST00000559989 K7EIL1 84 aa8.74□□□□□ -1.01
CSPG4P12-202ENST00000559989 GIG44P09565 113 aaPredicted RBP8.73□□□□□ -1.01
CSPG4P12-202ENST00000559989 Q5XG85 94 aa8.73□□□□□ -1.01
CSPG4P12-202ENST00000559989 KLK9Q2XQG4 91 aa8.73□□□□□ -1.01
CSPG4P12-202ENST00000559989 ZFYVE26Q68DK2 2539 aa8.73□□□□□ -1.01
CSPG4P12-202ENST00000559989 FLG2Q5D862 2391 aaPredicted RBP8.71□□□□□ -1.02
CSPG4P12-202ENST00000559989 ASB16-AS1Q495Z4 193 aa8.7□□□□□ -1.02
CSPG4P12-202ENST00000559989 BDP1A6H8Y1 2624 aa8.69□□□□□ -1.02
CSPG4P12-202ENST00000559989 ANKRD17O75179 2603 aaKnown RBP8.64□□□□□ -1.03
CSPG4P12-202ENST00000559989 ZNF462Q96JM2 2506 aa8.64□□□□□ -1.03
CSPG4P12-202ENST00000559989 TLN1Q9Y490 2541 aaKnown RBP8.63□□□□□ -1.03
CSPG4P12-202ENST00000559989 Q5W150 140 aa8.63□□□□□ -1.03
CSPG4P12-202ENST00000559989 FP248Q71RG6 208 aaPredicted RBP8.63□□□□□ -1.03
CSPG4P12-202ENST00000559989 MMP24-AS1A0A0U1RRL7 71 aa8.62□□□□□ -1.03
CSPG4P12-202ENST00000559989 PIEZO2Q9H5I5 2752 aa8.61□□□□□ -1.03
CSPG4P12-202ENST00000559989 M0QZ58 72 aa8.61□□□□□ -1.03
CSPG4P12-202ENST00000559989 CASC10Q5T4H9 136 aa8.6□□□□□ -1.03
CSPG4P12-202ENST00000559989 SEC61BP60468 96 aaKnown RBP8.59□□□□□ -1.03
CSPG4P12-202ENST00000559989 C10orf142B7Z368 130 aa8.58□□□□□ -1.04
CSPG4P12-202ENST00000559989 ABCA12Q86UK0 2595 aa8.58□□□□□ -1.04
CSPG4P12-202ENST00000559989 TLN2Q9Y4G6 2542 aa8.57□□□□□ -1.04
CSPG4P12-202ENST00000559989 C20orf166-AS1Q96NR2 134 aa8.55□□□□□ -1.04
CSPG4P12-202ENST00000559989 ADM2Q7Z4H4 148 aa8.49□□□□□ -1.05
CSPG4P12-202ENST00000559989 KRTAP10-3P60369 221 aa8.44□□□□□ -1.06
CSPG4P12-202ENST00000559989 PLAC8Q9NZF1 115 aa8.43□□□□□ -1.06
CSPG4P12-202ENST00000559989 JMJD1CQ15652 2540 aa8.43□□□□□ -1.06
CSPG4P12-202ENST00000559989 LINC00472Q9H8W2 130 aa8.42□□□□□ -1.06
CSPG4P12-202ENST00000559989 KRTAP25-1Q3LHN0 102 aa8.4□□□□□ -1.06
CSPG4P12-202ENST00000559989 Q8NDZ9 215 aa8.4□□□□□ -1.06
CSPG4P12-202ENST00000559989 SPATA8Q6RVD6 105 aa8.4□□□□□ -1.06
CSPG4P12-202ENST00000559989 CYSTM1Q9H1C7 97 aa8.4□□□□□ -1.07
CSPG4P12-202ENST00000559989 PKD1L2Q7Z442 2459 aa8.39□□□□□ -1.07
CSPG4P12-202ENST00000559989 A0A096LNT2 108 aa8.38□□□□□ -1.07
CSPG4P12-202ENST00000559989 WDR87Q6ZQQ6 2873 aa8.35□□□□□ -1.07
CSPG4P12-202ENST00000559989 SPRR1AP35321 89 aa8.33□□□□□ -1.08
CSPG4P12-202ENST00000559989 CHD8Q9HCK8 2581 aa8.32□□□□□ -1.08
CSPG4P12-202ENST00000559989 IGF2RP11717 2491 aa8.32□□□□□ -1.08
CSPG4P12-202ENST00000559989 Q6ZR54 194 aa8.31□□□□□ -1.08
CSPG4P12-202ENST00000559989 KRTAP26-1Q6PEX3 210 aa8.31□□□□□ -1.08
CSPG4P12-202ENST00000559989 NDUFAF8A1L188 74 aa8.31□□□□□ -1.08
CSPG4P12-202ENST00000559989 SPRR1BP22528 89 aa8.3□□□□□ -1.08
CSPG4P12-202ENST00000559989 PANO1I0J062 215 aa8.28□□□□□ -1.08
CSPG4P12-202ENST00000559989 USP9XQ93008 2570 aaPredicted RBP8.26□□□□□ -1.09
CSPG4P12-202ENST00000559989 MTORP42345 2549 aa8.26□□□□□ -1.09
CSPG4P12-202ENST00000559989 Q5VSD8 79 aa8.25□□□□□ -1.09
CSPG4P12-202ENST00000559989 OXTP01178 125 aa8.24□□□□□ -1.09
CSPG4P12-202ENST00000559989 SETD2Q9BYW2 2564 aaPredicted RBP8.23□□□□□ -1.09
CSPG4P12-202ENST00000559989 PIEZO1Q92508 2521 aa8.23□□□□□ -1.09
CSPG4P12-202ENST00000559989 A6NN06 94 aa8.19□□□□□ -1.1
CSPG4P12-202ENST00000559989 C10orf95Q9H7T3 257 aa8.18□□□□□ -1.1
CSPG4P12-202ENST00000559989 A8MUU9 505 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms