RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NDUFC2O95298 119 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 LY6G6CO95867 125 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 LYRM7Q5U5X0 104 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 MUSTN1Q8IVN3 82 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 ARL17AQ8IVW1 177 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 LINC00308Q8TCZ7 52 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 SNHG12Q9BXW3 62 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 NDUFS5O43920 106 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 COX6CP09669 75 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 TLX1NBP0CAT3 122 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 LCE4AQ5TA78 99 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 C1orf134Q5TEV5 83 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 FAM19A5Q7Z5A7 132 aaPredicted RBP3.32□□□□□ -1.88
LDLR-209ENST00000558528 MIR7-3HGQ8N6C7 128 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 CARD19Q96LW7 228 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 PRO0628Q9UI54 55 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 LRP1BQ9NZR2 4599 aa3.32□□□□□ -1.88
LDLR-209ENST00000558528 NDUFC2-KCTD14E9PQ53 114 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 SNCGO76070 127 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 CNBPP62633 177 aaKnown RBP3.31□□□□□ -1.88
LDLR-209ENST00000558528 C2orf82Q6UX34 121 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 UNQ6190/PRO20217Q6UXQ8 127 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 C15orf56Q8N910 161 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 SND1-IT1Q9HBX3 110 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 NHP2Q9NX24 153 aaKnown RBP3.31□□□□□ -1.88
LDLR-209ENST00000558528 LINC00474Q9P2X8 69 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 PRO1854Q9UHT4 67 aa3.31□□□□□ -1.88
LDLR-209ENST00000558528 SMIM26A0A096LP01 95 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 TRBV10-2A0A0K0K1G8 114 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 LOC107984640A0A0U1RRK4 108 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 FXYD2P54710 66 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 LCE5AQ5TCM9 118 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 Q6ZR54 194 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 Q6ZRU5 148 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 TMEM126AQ9H061 195 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 C6orf48Q9UBA6 75 aa3.3□□□□□ -1.88
LDLR-209ENST00000558528 M0R2N4 97 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 SCGB1C2P0DMR2 95 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 FABP2P12104 132 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 C6orf99Q4VX62 202 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 GTF2H5Q6ZYL4 71 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 KRTAP4-12Q9BQ66 201 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
LDLR-209ENST00000558528 IGLV1-50A0A075B6I6 118 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 TRBV20-1A0A075B6N2 111 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 A0A087WTM6 91 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 IGHV6-1A0A0B4J1U7 121 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 LRCOL1A6NCL2 159 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 H0YGX0 51 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 S100A7L2Q5SY68 101 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 Q6ZRN7 208 aaPredicted RBP3.28□□□□□ -1.88
LDLR-209ENST00000558528 Q8N814 137 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 DAND5Q8N907 189 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 OR13C6PQ8NH95 151 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 KRTAP9-3Q9BYQ3 159 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 KRTAP1-5Q9BYS1 174 aa3.28□□□□□ -1.88
LDLR-209ENST00000558528 DNAH5Q8TE73 4624 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 A0A0U1RQV1 116 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 A0A1B0GVY2 172 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 C16orf90A8MZG2 172 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 H3BUT2 72 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 M0R378 163 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 TAX1BP3O14907 124 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 UBE2AP49459 152 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 NPC2P61916 151 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 C9orf116Q5BN46 136 aaPredicted RBP3.27□□□□□ -1.89
LDLR-209ENST00000558528 C9orf163Q8N9P6 203 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 LINC00526Q96FQ7 95 aa3.27□□□□□ -1.89
LDLR-209ENST00000558528 A0A1W2PPM0 123 aa3.26□□□□□ -1.89
LDLR-209ENST00000558528 H3BQ85 93 aa3.26□□□□□ -1.89
LDLR-209ENST00000558528 LECT2O14960 151 aa3.26□□□□□ -1.89
LDLR-209ENST00000558528 RPL28P46779 137 aaKnown RBP3.26□□□□□ -1.89
LDLR-209ENST00000558528 C4orf26Q17RF5 130 aa3.26□□□□□ -1.89
LDLR-209ENST00000558528 SOSTDC1Q6X4U4 206 aa3.26□□□□□ -1.89
LDLR-209ENST00000558528 FAT1Q14517 4588 aa3.26□□□□□ -1.89
LDLR-209ENST00000558528 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.25□□□□□ -1.89
LDLR-209ENST00000558528 LOC100996750A0A140TA64 210 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 A0A1B0GX51 115 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 FAM168BA1KXE4 195 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 ATXN8Q156A1 80 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 DPH3Q96FX2 82 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 KRTAP4-6Q9BYQ5 205 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 XAGE1AQ9HD64 81 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 RNF213Q63HN8 5207 aa3.25□□□□□ -1.89
LDLR-209ENST00000558528 IGKV2-28A0A075B6P5 120 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 TRBV7-6A0A0J9YX20 115 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 H7C2G1 150 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 K7ERJ3 54 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 SLC25A20O43772 301 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 IGKV2D-28P01615 120 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 SPCS1Q9Y6A9 102 aa3.24□□□□□ -1.89
LDLR-209ENST00000558528 A0A1B0GV90 55 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 F8W1H4 67 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 K7EP34 96 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 RTL8CO15255 209 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 DNAL4O96015 105 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 IGLV6-57P01721 117 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 INAFM2P0DMQ5 153 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 WFDC2Q14508 124 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 164.6 ms