RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 DAND5Q8N907 189 aa3.07□□□□□ -1.92
RTF1-204ENST00000558117 UBE2WQ96B02 151 aa3.07□□□□□ -1.92
RTF1-204ENST00000558117 PLEKHB2Q96CS7 222 aa3.07□□□□□ -1.92
RTF1-204ENST00000558117 ODF3Q96PU9 254 aa3.07□□□□□ -1.92
RTF1-204ENST00000558117 MRPL16Q9NX20 251 aaKnown RBP3.07□□□□□ -1.92
RTF1-204ENST00000558117 TRAV9-1A0A075B6T8 112 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 NUPR1O60356 82 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BKO60814 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 IGHV3-53P01767 116 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BJP06899 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 SMIM17P0DL12 118 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BOP23527 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BBP33778 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BDP58876 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BCP62807 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 MOBPQ13875 183 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST2H2BEQ16778 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.06□□□□□ -1.92
RTF1-204ENST00000558117 C3orf22Q8N5N4 141 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BHQ93079 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 TOMM6Q96B49 74 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BNQ99877 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 HIST1H2BMQ99879 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 SPANXA1Q9NS26 97 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 LINC00846Q9NV44 126 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 TP73-AS1Q9UF72 201 aa3.06□□□□□ -1.92
RTF1-204ENST00000558117 TRGV1A0A0A0MS02 117 aa3.05□□□□□ -1.92
RTF1-204ENST00000558117 D6R8Y8 96 aa3.05□□□□□ -1.92
RTF1-204ENST00000558117 CKS2P33552 79 aa3.05□□□□□ -1.92
RTF1-204ENST00000558117 FAM74A4Q5TZK3 123 aa3.05□□□□□ -1.92
RTF1-204ENST00000558117 BAGE3Q86Y29 109 aa3.05□□□□□ -1.92
RTF1-204ENST00000558117 ST20-AS1Q8NBB2 130 aa3.05□□□□□ -1.92
RTF1-204ENST00000558117 SLC25A20O43772 301 aa3.04□□□□□ -1.92
RTF1-204ENST00000558117 S100A8P05109 93 aa3.04□□□□□ -1.92
RTF1-204ENST00000558117 PMCHL1Q16048 86 aa3.04□□□□□ -1.92
RTF1-204ENST00000558117 RPL39LQ96EH5 51 aaKnown RBP3.04□□□□□ -1.92
RTF1-204ENST00000558117 PRELID3AQ96N28 172 aa3.04□□□□□ -1.92
RTF1-204ENST00000558117 RETNLBQ9BQ08 111 aa3.04□□□□□ -1.92
RTF1-204ENST00000558117 TMEM191AQ9H0A3 160 aa3.04□□□□□ -1.92
RTF1-204ENST00000558117 M0R2P5 195 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 NPYP01303 97 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 MT-ND6P03923 174 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 AKR1D1P51857 326 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 ZNF56Q15929 161 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 DNLZQ5SXM8 178 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 CFAP126Q5VTH2 177 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 SLC25A34Q6PIV7 304 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 RASL11AQ6T310 242 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 FAM19A2Q8N3H0 131 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 OR10D4PQ8NGN7 298 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 AP1S3Q96PC3 154 aa3.03□□□□□ -1.92
RTF1-204ENST00000558117 A0A0B4J2C4 111 aa3.02□□□□□ -1.93
RTF1-204ENST00000558117 H3BQ85 93 aa3.02□□□□□ -1.93
RTF1-204ENST00000558117 FABP4P15090 132 aa3.02□□□□□ -1.93
RTF1-204ENST00000558117 IFI27P40305 119 aaPredicted RBP3.02□□□□□ -1.93
RTF1-204ENST00000558117 HIST3H2BBQ8N257 126 aa3.02□□□□□ -1.93
RTF1-204ENST00000558117 C18orf32Q8TCD1 76 aa3.02□□□□□ -1.93
RTF1-204ENST00000558117 CNFNQ9BYD5 112 aa3.02□□□□□ -1.93
RTF1-204ENST00000558117 A0A087WX48 190 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 UBE2L6O14933 153 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 IGLV7-43P04211 117 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 Q0VG73 95 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 KTN1-AS1Q86SY8 53 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 KRTAP2-1Q9BYU5 128 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 IMUPQ9GZP8 106 aa3.01□□□□□ -1.93
RTF1-204ENST00000558117 IGHV3-64A0A075B6Q5 118 aa3□□□□□ -1.93
RTF1-204ENST00000558117 TRGV4A0A0C4DH28 118 aa3□□□□□ -1.93
RTF1-204ENST00000558117 A8MWV9 139 aa3□□□□□ -1.93
RTF1-204ENST00000558117 M0QY20 66 aa3□□□□□ -1.93
RTF1-204ENST00000558117 ZNF73O43830 326 aaPredicted RBP3□□□□□ -1.93
RTF1-204ENST00000558117 HIST1H2BLQ99880 126 aa3□□□□□ -1.93
RTF1-204ENST00000558117 ST20Q9HBF5 79 aa3□□□□□ -1.93
RTF1-204ENST00000558117 IGHV1-24A0A0C4DH33 117 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 KRTDAPP60985 99 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 RPS28P62857 69 aaKnown RBP2.99□□□□□ -1.93
RTF1-204ENST00000558117 SS18Q15532 418 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 LCA10Q71F78 164 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 Q8N8P6 123 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 TTTY13Q9BZ97 58 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 XAGE1AQ9HD64 81 aa2.99□□□□□ -1.93
RTF1-204ENST00000558117 SDHAF1A6NFY7 115 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 FCER1GP30273 86 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 LYRM7Q5U5X0 104 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 DIRC1Q969H9 104 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 CHCHD1Q96BP2 118 aaKnown RBP2.98□□□□□ -1.93
RTF1-204ENST00000558117 PMCHL2Q9BQD1 86 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 SMIM2Q9BVW6 85 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 NIT2Q9NQR4 276 aa2.98□□□□□ -1.93
RTF1-204ENST00000558117 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.97□□□□□ -1.93
RTF1-204ENST00000558117 A0A1B0GX51 115 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 IGKV2-29A2NJV5 120 aaPredicted RBP2.97□□□□□ -1.93
RTF1-204ENST00000558117 LEPROTO15243 131 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 C3orf79P0CE67 100 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 UBE2D1P51668 147 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 POLR2KP53803 58 aaKnown RBP2.97□□□□□ -1.93
RTF1-204ENST00000558117 RPL39P62891 51 aaKnown RBP2.97□□□□□ -1.93
RTF1-204ENST00000558117 ATOH7Q8N100 152 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 CARD19Q96LW7 228 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 C20orf78Q9BR46 151 aa2.97□□□□□ -1.93
RTF1-204ENST00000558117 NXT2Q9NPJ8 142 aaKnown RBP2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms