RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 BCORQ6W2J9 1755 aa-1.94□□□□□ -2.72
VPS13C-205ENST00000558088 TRRAPQ9Y4A5 3859 aa-1.94□□□□□ -2.72
VPS13C-205ENST00000558088 PHLPP1O60346 1717 aa-1.94□□□□□ -2.72
VPS13C-205ENST00000558088 CACFD1Q9UGQ2 172 aa-1.95□□□□□ -2.72
VPS13C-205ENST00000558088 SMG1Q96Q15 3661 aaKnown RBP-1.95□□□□□ -2.72
VPS13C-205ENST00000558088 SHROOM2Q13796 1616 aa-1.95□□□□□ -2.72
VPS13C-205ENST00000558088 MAP3K1Q13233 1512 aa-1.96□□□□□ -2.72
VPS13C-205ENST00000558088 UBE2D4Q9Y2X8 147 aa-1.96□□□□□ -2.72
VPS13C-205ENST00000558088 CUX1P39880 1505 aa-1.96□□□□□ -2.72
VPS13C-205ENST00000558088 DIP2CQ9Y2E4 1556 aa-1.97□□□□□ -2.72
VPS13C-205ENST00000558088 IGLC2P0DOY2 106 aa-1.97□□□□□ -2.72
VPS13C-205ENST00000558088 IGLC3P0DOY3 106 aa-1.97□□□□□ -2.72
VPS13C-205ENST00000558088 RPL38P63173 70 aaKnown RBP-1.97□□□□□ -2.72
VPS13C-205ENST00000558088 KRTAP19-5Q3LI72 72 aa-1.97□□□□□ -2.72
VPS13C-205ENST00000558088 COX6B2Q6YFQ2 88 aa-1.97□□□□□ -2.72
VPS13C-205ENST00000558088 MRC2Q9UBG0 1479 aa-1.98□□□□□ -2.73
VPS13C-205ENST00000558088 hADV29S1A0JD25 119 aa-1.98□□□□□ -2.73
VPS13C-205ENST00000558088 KRTAP20-1Q3LI63 56 aa-1.98□□□□□ -2.73
VPS13C-205ENST00000558088 ALKQ9UM73 1620 aa-1.99□□□□□ -2.73
VPS13C-205ENST00000558088 KIAA1551Q9HCM1 1747 aa-1.99□□□□□ -2.73
VPS13C-205ENST00000558088 MAPKBP1O60336 1514 aa-1.99□□□□□ -2.73
VPS13C-205ENST00000558088 TRBV25-1A0A075B6N4 114 aa-1.99□□□□□ -2.73
VPS13C-205ENST00000558088 TSC22D3Q99576 134 aa-1.99□□□□□ -2.73
VPS13C-205ENST00000558088 TARBP1Q13395 1621 aaKnown RBP-1.99□□□□□ -2.73
VPS13C-205ENST00000558088 BPTFQ12830 3046 aa-2□□□□□ -2.73
VPS13C-205ENST00000558088 D6R8Y8 96 aa-2□□□□□ -2.73
VPS13C-205ENST00000558088 UQCRHP07919 91 aa-2□□□□□ -2.73
VPS13C-205ENST00000558088 PRLHP81277 87 aa-2□□□□□ -2.73
VPS13C-205ENST00000558088 MUSTN1Q8IVN3 82 aa-2□□□□□ -2.73
VPS13C-205ENST00000558088 LOC105371267A0A1B0GV96 52 aa-2.01□□□□□ -2.73
VPS13C-205ENST00000558088 LEPROTL1O95214 131 aa-2.01□□□□□ -2.73
VPS13C-205ENST00000558088 COX7BP24311 80 aa-2.01□□□□□ -2.73
VPS13C-205ENST00000558088 RGPD2P0DJD1 1756 aa-2.01□□□□□ -2.73
VPS13C-205ENST00000558088 DMXL2Q8TDJ6 3036 aa-2.01□□□□□ -2.73
VPS13C-205ENST00000558088 DNAH5Q8TE73 4624 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 RANBP2P49792 3224 aaKnown RBP-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 FOCADQ5VW36 1801 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 KIF20BQ96Q89 1820 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 UBR3Q6ZT12 1888 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 NDUFA2O43678 99 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 LINC00158P58513 81 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 PRO3102Q9H379 93 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 DNAH17Q9UFH2 4485 aa-2.02□□□□□ -2.73
VPS13C-205ENST00000558088 C3orf79P0CE67 100 aa-2.03□□□□□ -2.73
VPS13C-205ENST00000558088 DYNC2H1Q8NCM8 4307 aaKnown RBP-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 H3BQ15 152 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 ROCK2O75116 1388 aaKnown RBP-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 PPP3R1P63098 170 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 SAMD9Q5K651 1589 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 MON2Q7Z3U7 1717 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 SERP2Q8N6R1 65 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 FAM107BQ9H098 131 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 IER3IP1Q9Y5U9 82 aa-2.04□□□□□ -2.74
VPS13C-205ENST00000558088 ARHGAP5Q13017 1502 aa-2.05□□□□□ -2.74
VPS13C-205ENST00000558088 GNGT2O14610 69 aa-2.05□□□□□ -2.74
VPS13C-205ENST00000558088 NDUFC1O43677 76 aa-2.05□□□□□ -2.74
VPS13C-205ENST00000558088 TRGV9Q99603 122 aa-2.05□□□□□ -2.74
VPS13C-205ENST00000558088 C4AP0C0L4 1744 aa-2.05□□□□□ -2.74
VPS13C-205ENST00000558088 C4BP0C0L5 1744 aa-2.05□□□□□ -2.74
VPS13C-205ENST00000558088 MAGI2Q86UL8 1455 aa-2.06□□□□□ -2.74
VPS13C-205ENST00000558088 MT1EP04732 61 aa-2.06□□□□□ -2.74
VPS13C-205ENST00000558088 MT1BP07438 61 aa-2.06□□□□□ -2.74
VPS13C-205ENST00000558088 S100A1P23297 94 aa-2.06□□□□□ -2.74
VPS13C-205ENST00000558088 CLPSL2Q6UWE3 100 aa-2.06□□□□□ -2.74
VPS13C-205ENST00000558088 ATMQ13315 3056 aa-2.06□□□□□ -2.74
VPS13C-205ENST00000558088 FAM135AQ9P2D6 1515 aa-2.07□□□□□ -2.74
VPS13C-205ENST00000558088 ALKAL2Q6UX46 152 aa-2.07□□□□□ -2.74
VPS13C-205ENST00000558088 GAFA1Q96PS6 74 aa-2.07□□□□□ -2.74
VPS13C-205ENST00000558088 C5P01031 1676 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 SHPRHQ149N8 1683 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 GNG4P50150 75 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 ETDBQ3ZM63 59 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 MT1MQ8N339 61 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 MT1LQ93083 61 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 MYOM2P54296 1465 aa-2.08□□□□□ -2.74
VPS13C-205ENST00000558088 MT2AP02795 61 aa-2.09□□□□□ -2.74
VPS13C-205ENST00000558088 ZNF720Q7Z2F6 126 aa-2.09□□□□□ -2.74
VPS13C-205ENST00000558088 PREX1Q8TCU6 1659 aa-2.09□□□□□ -2.74
VPS13C-205ENST00000558088 SPENQ96T58 3664 aaKnown RBP-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 IQCF6A8MYZ5 107 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 MPC2O95563 127 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 MT1GP13640 62 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 HMGN3Q15651 99 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 DEFB106AQ8N104 65 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 MLH3Q9UHC1 1453 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 BOD1L1Q8NFC6 3051 aa-2.1□□□□□ -2.75
VPS13C-205ENST00000558088 LRRC9Q6ZRR7 1453 aa-2.11□□□□□ -2.75
VPS13C-205ENST00000558088 GTF2H5Q6ZYL4 71 aa-2.11□□□□□ -2.75
VPS13C-205ENST00000558088 DNAH10Q8IVF4 4471 aa-2.12□□□□□ -2.75
VPS13C-205ENST00000558088 F8WEM9 126 aa-2.12□□□□□ -2.75
VPS13C-205ENST00000558088 TOPAZ1Q8N9V7 1692 aa-2.12□□□□□ -2.75
VPS13C-205ENST00000558088 SCN11AQ9UI33 1791 aa-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 PMCHL2Q9BQD1 86 aa-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 CUL7Q14999 1698 aa-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 ABCC2Q92887 1545 aa-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 RGPD8O14715 1765 aaPredicted RBP-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 RGPD5Q99666 1765 aa-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 SPTBN5Q9NRC6 3674 aaKnown RBP-2.13□□□□□ -2.75
VPS13C-205ENST00000558088 COL5A1-AS1Q5SY13 56 aa-2.14□□□□□ -2.75
VPS13C-205ENST00000558088 TMEM203Q969S6 136 aa-2.14□□□□□ -2.75
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms