RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ITPR1Q14643 2758 aa1.88□□□□□ -2.11
SLIRP-208ENST00000556956 CR1P17927 2039 aa1.88□□□□□ -2.11
SLIRP-208ENST00000556956 PIEZO1Q92508 2521 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 NCOR2Q9Y618 2525 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 ABCA2Q9BZC7 2435 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 IGLV5-48A0A075B6I7 105 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 C3orf84H3BNL1 204 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 H3BPC8 53 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 SPART-AS1P0CW21 52 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 UBE2AP49459 152 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 APOC4P55056 127 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 MP68P56378 58 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 UBE2BP63146 152 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 CD164Q04900 197 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 DEFB113Q30KQ7 82 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 KPRPQ5T749 579 aaPredicted RBP1.87□□□□□ -2.11
SLIRP-208ENST00000556956 PKD1L2Q7Z442 2459 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 RP1L1Q8IWN7 2480 aaPredicted RBP1.87□□□□□ -2.11
SLIRP-208ENST00000556956 Q8N377 158 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 Q8N9L7 120 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 NKAPP1Q8N9T2 125 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 NBEAQ8NFP9 2946 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 DEFB105AQ8NG35 78 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 ZCCHC13Q8WW36 166 aaKnown RBP1.87□□□□□ -2.11
SLIRP-208ENST00000556956 WFDC10AQ9H1F0 79 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 KCNQ1DNQ9H478 68 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 XAGE1AQ9HD64 81 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 KLK12Q9UKR0 248 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 CHD8Q9HCK8 2581 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 ABCA4P78363 2273 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 PKDREJQ9NTG1 2253 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 USP24Q9UPU5 2620 aa1.87□□□□□ -2.11
SLIRP-208ENST00000556956 ATRXP46100 2492 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.86□□□□□ -2.11
SLIRP-208ENST00000556956 TRAV22A0A0B4J277 110 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 HCG22E2RYF7 251 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 PSCAO43653 123 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 C1orf137Q5JT78 98 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 Q6ZRP5 223 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 Q75L30 129 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 MRPL55Q7Z7F7 128 aaKnown RBP1.86□□□□□ -2.11
SLIRP-208ENST00000556956 Q8NBF4 154 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 SPRR4Q96PI1 79 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 B9D2Q9BPU9 175 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 LIMD2Q9BT23 127 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 KALRNO60229 2985 aa1.86□□□□□ -2.11
SLIRP-208ENST00000556956 SPTBN1Q01082 2364 aaKnown RBP1.85□□□□□ -2.11
SLIRP-208ENST00000556956 SPTA1P02549 2419 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 IGSF10Q6WRI0 2623 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 A0A1W2PNM2 257 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 LRCOL1A6NCL2 159 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 PSPHP1O15172 72 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 NDUFS5O43920 106 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 PRB1P04280 392 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 HTN3P15516 51 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 SYCNQ0VAF6 134 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 NOTCH2NLQ7Z3S9 236 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 KRTAP7-1Q8IUC3 87 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 SPANXA2-OT1Q8N9U9 137 aa1.85□□□□□ -2.11
SLIRP-208ENST00000556956 NACAE9PAV3 2078 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 A8MUN3 132 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 H3BNG1 76 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 CHKB-CPT1BH3BT56 60 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 TLX1NBP0CAT3 122 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 DSCR10P59022 87 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 ATP11AUNQ6ZP68 121 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 C7orf33Q8WU49 177 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 Q9BRP9 147 aa1.84□□□□□ -2.11
SLIRP-208ENST00000556956 KMT2BQ9UMN6 2715 aaPredicted RBP1.84□□□□□ -2.12
SLIRP-208ENST00000556956 SMG1Q96Q15 3661 aaKnown RBP1.84□□□□□ -2.12
SLIRP-208ENST00000556956 ROS1P08922 2347 aa1.84□□□□□ -2.12
SLIRP-208ENST00000556956 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.84□□□□□ -2.124e-15■■■■■ 30.4
SLIRP-208ENST00000556956 ANKRD17O75179 2603 aaKnown RBP1.84□□□□□ -2.12
SLIRP-208ENST00000556956 ACACBO00763 2458 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 UBR5O95071 2799 aaPredicted RBP1.83□□□□□ -2.12
SLIRP-208ENST00000556956 WNK2Q9Y3S1 2297 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 NBASA2RRP1 2371 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 IGLV1-50A0A075B6I6 118 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 IGLV7-46A0A075B6I9 117 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 H0Y9P7 68 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 K7EQZ3 153 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 DEFB4AO15263 64 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 SPRR1AP35321 89 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 DEFB135Q30KP9 77 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 LCE3EQ5T5B0 92 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 Q5VV11 94 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 KRTAP26-1Q6PEX3 210 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 Q6ZRX8 168 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 KTN1-AS1Q86SY8 53 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 C15orf56Q8N910 161 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 Q8NAQ8 132 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 ST20-AS1Q8NBB2 130 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 LINC00208Q96KT6 92 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 DOPEY1Q5JWR5 2465 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 RELNP78509 3460 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 DCHS2Q6V1P9 2916 aa1.83□□□□□ -2.12
SLIRP-208ENST00000556956 LRBAP50851 2863 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 ADGRG4Q8IZF6 3080 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 IGKV2D-24A0A075B6R9 120 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 RPL37AP8A6NKH3 93 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms