RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 LINC00337Q8N6G1 96 aa10.52□□□□□ -0.73
SHMT2-225ENST00000556798 TRAV23DV6A0A075B6W5 121 aa10.51□□□□□ -0.73
SHMT2-225ENST00000556798 ETDCA0A1B0GVM5 59 aa10.51□□□□□ -0.73
SHMT2-225ENST00000556798 KRTAP4-16G5E9R7 235 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-225ENST00000556798 KRTAP1-4P0C5Y4 121 aa10.51□□□□□ -0.73
SHMT2-225ENST00000556798 PPDPFQ9H3Y8 114 aa10.51□□□□□ -0.73
SHMT2-225ENST00000556798 HIGD2AQ9BW72 106 aa10.5□□□□□ -0.73
SHMT2-225ENST00000556798 TNXBP22105 4242 aa10.5□□□□□ -0.73
SHMT2-225ENST00000556798 SLC25A34Q6PIV7 304 aa10.49□□□□□ -0.73
SHMT2-225ENST00000556798 LINC00518Q8N0U6 118 aa10.49□□□□□ -0.73
SHMT2-225ENST00000556798 ZNF73O43830 326 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-225ENST00000556798 PRR26Q8N8Z3 221 aa10.47□□□□□ -0.73
SHMT2-225ENST00000556798 HIST1H4GQ99525 98 aa10.47□□□□□ -0.73
SHMT2-225ENST00000556798 HERC1Q15751 4861 aa10.46□□□□□ -0.73
SHMT2-225ENST00000556798 B5MCH6 92 aa10.46□□□□□ -0.73
SHMT2-225ENST00000556798 C2orf91Q6ZV80 131 aa10.46□□□□□ -0.73
SHMT2-225ENST00000556798 A4D1N5 150 aa10.45□□□□□ -0.74
SHMT2-225ENST00000556798 A6NDN8 102 aa10.45□□□□□ -0.74
SHMT2-225ENST00000556798 KRTAP10-8P60410 259 aa10.44□□□□□ -0.74
SHMT2-225ENST00000556798 SMCR5Q8TEV8 140 aa10.44□□□□□ -0.74
SHMT2-225ENST00000556798 ANAPC11Q9NYG5 84 aa10.44□□□□□ -0.74
SHMT2-225ENST00000556798 HIGD1BQ9P298 99 aa10.44□□□□□ -0.74
SHMT2-225ENST00000556798 Q6ZRX8 168 aa10.43□□□□□ -0.74
SHMT2-225ENST00000556798 CBY1Q9Y3M2 126 aa10.43□□□□□ -0.74
SHMT2-225ENST00000556798 C12orf57Q99622 126 aa10.42□□□□□ -0.74
SHMT2-225ENST00000556798 Q9BRP9 147 aa10.42□□□□□ -0.74
SHMT2-225ENST00000556798 A0A087X002 238 aa10.4□□□□□ -0.74
SHMT2-225ENST00000556798 TRAV13-2A0A0B4J235 113 aa10.4□□□□□ -0.74
SHMT2-225ENST00000556798 C6orf99Q4VX62 202 aa10.4□□□□□ -0.74
SHMT2-225ENST00000556798 ERC2-IT1O76042 136 aa10.39□□□□□ -0.75
SHMT2-225ENST00000556798 HINT1P49773 126 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-225ENST00000556798 SPRR4Q96PI1 79 aa10.38□□□□□ -0.75
SHMT2-225ENST00000556798 CRYGAP11844 174 aa10.36□□□□□ -0.75
SHMT2-225ENST00000556798 SMIM11BQ8TCY0 68 aa10.36□□□□□ -0.75
SHMT2-225ENST00000556798 ZNF706Q9Y5V0 76 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-225ENST00000556798 COX7BP24311 80 aa10.35□□□□□ -0.75
SHMT2-225ENST00000556798 RPL13AP40429 203 aaKnown RBP10.35□□□□□ -0.75
SHMT2-225ENST00000556798 ELOF1P60002 83 aaKnown RBP10.34□□□□□ -0.75
SHMT2-225ENST00000556798 TAL2Q16559 108 aa10.34□□□□□ -0.75
SHMT2-225ENST00000556798 FAM229BQ4G0N7 80 aa10.34□□□□□ -0.75
SHMT2-225ENST00000556798 CEND1Q8N111 149 aa10.34□□□□□ -0.75
SHMT2-225ENST00000556798 UQCR10Q9UDW1 63 aa10.34□□□□□ -0.75
SHMT2-225ENST00000556798 KRTAP13-2Q52LG2 175 aa10.33□□□□□ -0.76
SHMT2-225ENST00000556798 LOC105371267A0A1B0GV96 52 aa10.32□□□□□ -0.76
SHMT2-225ENST00000556798 SMIM6P0DI80 62 aa10.32□□□□□ -0.76
SHMT2-225ENST00000556798 GAGE2AQ6NT46 116 aa10.32□□□□□ -0.76
SHMT2-225ENST00000556798 CFC1BP0CG36 223 aa10.31□□□□□ -0.76
SHMT2-225ENST00000556798 CFC1P0CG37 223 aa10.31□□□□□ -0.76
SHMT2-225ENST00000556798 ST20-AS1Q8NBB2 130 aa10.31□□□□□ -0.76
SHMT2-225ENST00000556798 PRO1933Q9H354 126 aa10.31□□□□□ -0.76
SHMT2-225ENST00000556798 TRBV7-6A0A0J9YX20 115 aa10.3□□□□□ -0.76
SHMT2-225ENST00000556798 A0A1B0GWB2 263 aa10.3□□□□□ -0.76
SHMT2-225ENST00000556798 FXYD2P54710 66 aa10.3□□□□□ -0.76
SHMT2-225ENST00000556798 TYMSOSQ8TAI1 123 aa10.3□□□□□ -0.76
SHMT2-225ENST00000556798 H7C2G1 150 aa10.29□□□□□ -0.76
SHMT2-225ENST00000556798 HSD52Q0P140 79 aa10.29□□□□□ -0.76
SHMT2-225ENST00000556798 C3orf22Q8N5N4 141 aa10.29□□□□□ -0.76
SHMT2-225ENST00000556798 RAB37Q96AX2 223 aa10.29□□□□□ -0.76
SHMT2-225ENST00000556798 DHRS4-AS1Q9P1J3 65 aa10.29□□□□□ -0.76
SHMT2-225ENST00000556798 A0A0B4J2C4 111 aa10.28□□□□□ -0.76
SHMT2-225ENST00000556798 LINC00483Q53H64 154 aa10.28□□□□□ -0.76
SHMT2-225ENST00000556798 TMEM238LA0A1B0GVL6 79 aa10.26□□□□□ -0.77
SHMT2-225ENST00000556798 A6NJY4 79 aa10.26□□□□□ -0.77
SHMT2-225ENST00000556798 VAMP3Q15836 100 aa10.23□□□□□ -0.77
SHMT2-225ENST00000556798 NHP2Q9NX24 153 aaKnown RBP10.23□□□□□ -0.77
SHMT2-225ENST00000556798 IGLV9-49A0A0B4J1Y8 123 aa10.22□□□□□ -0.77
SHMT2-225ENST00000556798 K7ERJ3 54 aa10.21□□□□□ -0.77
SHMT2-225ENST00000556798 Q1RN00 199 aa10.21□□□□□ -0.77
SHMT2-225ENST00000556798 PRO1854Q9UHT4 67 aa10.21□□□□□ -0.77
SHMT2-225ENST00000556798 DEFB105AQ8NG35 78 aa10.2□□□□□ -0.78
SHMT2-225ENST00000556798 TSPAN13O95857 204 aa10.19□□□□□ -0.78
SHMT2-225ENST00000556798 MOBPQ13875 183 aa10.19□□□□□ -0.78
SHMT2-225ENST00000556798 BVES-AS1Q5T3Y7 98 aa10.19□□□□□ -0.78
SHMT2-225ENST00000556798 LINC00575Q6W349 94 aa10.19□□□□□ -0.78
SHMT2-225ENST00000556798 LINC00304Q8N9R0 145 aa10.19□□□□□ -0.78
SHMT2-225ENST00000556798 HMCN2Q8NDA2 5059 aa10.19□□□□□ -0.78
SHMT2-225ENST00000556798 SLC25A20O43772 301 aa10.18□□□□□ -0.78
SHMT2-225ENST00000556798 SPRR1BP22528 89 aa10.18□□□□□ -0.78
SHMT2-225ENST00000556798 Q8NBF4 154 aa10.17□□□□□ -0.78
SHMT2-225ENST00000556798 C9orf153Q5TBE3 101 aa10.16□□□□□ -0.78
SHMT2-225ENST00000556798 hADV29S1A0JD25 119 aa10.15□□□□□ -0.78
SHMT2-225ENST00000556798 LINC01547P58512 204 aaPredicted RBP10.15□□□□□ -0.78
SHMT2-225ENST00000556798 CTAG1AP78358 180 aa10.15□□□□□ -0.78
SHMT2-225ENST00000556798 IGLV5-48A0A075B6I7 105 aa10.14□□□□□ -0.79
SHMT2-225ENST00000556798 TEX49A0A1B0GTD5 131 aa10.14□□□□□ -0.79
SHMT2-225ENST00000556798 TSTD3H0UI37 97 aa10.13□□□□□ -0.79
SHMT2-225ENST00000556798 Q6ZQY7 126 aa10.13□□□□□ -0.79
SHMT2-225ENST00000556798 TRIAP1O43715 76 aa10.12□□□□□ -0.79
SHMT2-225ENST00000556798 LAMTOR3Q9UHA4 124 aa10.12□□□□□ -0.79
SHMT2-225ENST00000556798 FAM218AQ96MZ4 157 aa10.11□□□□□ -0.79
SHMT2-225ENST00000556798 SMIM29Q86T20 159 aa10.1□□□□□ -0.79
SHMT2-225ENST00000556798 Q8N377 158 aa10.1□□□□□ -0.79
SHMT2-225ENST00000556798 H0YGX0 51 aa10.09□□□□□ -0.79
SHMT2-225ENST00000556798 M0R143 59 aa10.09□□□□□ -0.79
SHMT2-225ENST00000556798 SSBP3-AS1Q7Z2R9 100 aa10.09□□□□□ -0.79
SHMT2-225ENST00000556798 PSMB2P49721 201 aa10.08□□□□□ -0.8
SHMT2-225ENST00000556798 C4orf48Q5BLP8 95 aa10.08□□□□□ -0.8
SHMT2-225ENST00000556798 SPAG11AQ6PDA7 123 aa10.07□□□□□ -0.8
SHMT2-225ENST00000556798 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-225ENST00000556798 CLEC2BQ92478 149 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms