RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 UQCR11O14957 56 aa4.67□□□□□ -1.66
SYNE2-216ENST00000555002 KRTAP24-1Q3LI83 254 aa4.66□□□□□ -1.66
SYNE2-216ENST00000555002 Q8N1X5 172 aa4.66□□□□□ -1.66
SYNE2-216ENST00000555002 DNAH10OSP0CZ25 163 aa4.66□□□□□ -1.66
SYNE2-216ENST00000555002 FLNAP21333 2647 aaKnown RBP4.65□□□□□ -1.66
SYNE2-216ENST00000555002 IGHV3OR16-9A0A0B4J2B5 98 aa4.65□□□□□ -1.66
SYNE2-216ENST00000555002 LOC110117498A0A087WWA1 95 aa4.65□□□□□ -1.66
SYNE2-216ENST00000555002 TRBV7-4A0A0J9YYF1 115 aa4.65□□□□□ -1.67
SYNE2-216ENST00000555002 CSNK1G2-AS1Q8NCQ2 148 aa4.65□□□□□ -1.67
SYNE2-216ENST00000555002 IGLV5-45A0A087WSX0 123 aa4.65□□□□□ -1.67
SYNE2-216ENST00000555002 MRPL34Q9BQ48 92 aaKnown RBP4.65□□□□□ -1.67
SYNE2-216ENST00000555002 CDC42SE1Q9NRR8 79 aa4.64□□□□□ -1.67
SYNE2-216ENST00000555002 ANAPC11Q9NYG5 84 aa4.64□□□□□ -1.67
SYNE2-216ENST00000555002 GVQW2A0A096LPI5 108 aaPredicted RBP4.64□□□□□ -1.67
SYNE2-216ENST00000555002 A8MUN3 132 aa4.64□□□□□ -1.67
SYNE2-216ENST00000555002 LINC00483Q53H64 154 aa4.64□□□□□ -1.67
SYNE2-216ENST00000555002 HELZ2Q9BYK8 2649 aaKnown RBP4.63□□□□□ -1.67
SYNE2-216ENST00000555002 IGLV1-50A0A075B6I6 118 aa4.63□□□□□ -1.67
SYNE2-216ENST00000555002 A0A0G2JQZ4 141 aa4.63□□□□□ -1.67
SYNE2-216ENST00000555002 A0A1W2PNN7 141 aa4.63□□□□□ -1.67
SYNE2-216ENST00000555002 A0A096LNJ9 63 aa4.63□□□□□ -1.67
SYNE2-216ENST00000555002 COL4A2P08572 1712 aa4.62□□□□□ -1.67
SYNE2-216ENST00000555002 PRO3102Q9H379 93 aa4.62□□□□□ -1.67
SYNE2-216ENST00000555002 LINC00336Q6ZUF6 198 aa4.62□□□□□ -1.67
SYNE2-216ENST00000555002 CAMK2N1Q7Z7J9 78 aa4.62□□□□□ -1.67
SYNE2-216ENST00000555002 C8orf17Q9NRJ1 99 aa4.62□□□□□ -1.67
SYNE2-216ENST00000555002 SETXQ7Z333 2677 aaKnown RBP4.61□□□□□ -1.67
SYNE2-216ENST00000555002 NOTCH1P46531 2555 aa4.61□□□□□ -1.67
SYNE2-216ENST00000555002 Q8NAQ8 132 aa4.6□□□□□ -1.67
SYNE2-216ENST00000555002 A0A1B0GVX0 72 aa4.6□□□□□ -1.67
SYNE2-216ENST00000555002 A0A1B0GW54 56 aa4.6□□□□□ -1.67
SYNE2-216ENST00000555002 COL6A5A8TX70 2615 aa4.59□□□□□ -1.67
SYNE2-216ENST00000555002 TEP1Q99973 2627 aaKnown RBP4.59□□□□□ -1.67
SYNE2-216ENST00000555002 C15orf56Q8N910 161 aa4.59□□□□□ -1.67
SYNE2-216ENST00000555002 IGFL1Q6UW32 110 aa4.58□□□□□ -1.68
SYNE2-216ENST00000555002 H3BNG1 76 aa4.58□□□□□ -1.68
SYNE2-216ENST00000555002 LINC00528Q8N1L1 170 aa4.58□□□□□ -1.68
SYNE2-216ENST00000555002 Q6ZSA8 131 aa4.57□□□□□ -1.68
SYNE2-216ENST00000555002 ERC2-IT1O76042 136 aa4.57□□□□□ -1.68
SYNE2-216ENST00000555002 KRTAP10-11P60412 298 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 CYP4F30PQ9H0H9 118 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 TEX15Q9BXT5 2789 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 ZNF861PO60384 105 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 COX8CQ7Z4L0 72 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 PRR15Q8IV56 129 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 FAM104AQ969W3 186 aa4.56□□□□□ -1.68
SYNE2-216ENST00000555002 LINC01546A6NGU7 62 aa4.55□□□□□ -1.68
SYNE2-216ENST00000555002 RPS28P62857 69 aaKnown RBP4.55□□□□□ -1.68
SYNE2-216ENST00000555002 CHD6Q8TD26 2715 aa4.55□□□□□ -1.68
SYNE2-216ENST00000555002 K7EIL1 84 aa4.55□□□□□ -1.68
SYNE2-216ENST00000555002 UNC79Q9P2D8 2635 aa4.54□□□□□ -1.68
SYNE2-216ENST00000555002 Q1T7F1 81 aa4.54□□□□□ -1.68
SYNE2-216ENST00000555002 PRR26Q8N8Z3 221 aa4.54□□□□□ -1.68
SYNE2-216ENST00000555002 WIPF1O43516 503 aa4.54□□□□□ -1.68
SYNE2-216ENST00000555002 SMCPP49901 116 aaPredicted RBP4.54□□□□□ -1.68
SYNE2-216ENST00000555002 A0A087WTM6 91 aa4.53□□□□□ -1.68
SYNE2-216ENST00000555002 KTN1-AS1Q86SY8 53 aa4.53□□□□□ -1.68
SYNE2-216ENST00000555002 IGLV7-43P04211 117 aa4.52□□□□□ -1.69
SYNE2-216ENST00000555002 PLA2G2DQ9UNK4 145 aa4.52□□□□□ -1.69
SYNE2-216ENST00000555002 TLX1NBP0CAT3 122 aa4.52□□□□□ -1.69
SYNE2-216ENST00000555002 CD164Q04900 197 aa4.52□□□□□ -1.69
SYNE2-216ENST00000555002 KCNQ1DNQ9H478 68 aa4.51□□□□□ -1.69
SYNE2-216ENST00000555002 IGLV7-46A0A075B6I9 117 aa4.51□□□□□ -1.69
SYNE2-216ENST00000555002 PSORS1C2Q9UIG4 136 aa4.5□□□□□ -1.69
SYNE2-216ENST00000555002 LCA10Q71F78 164 aa4.49□□□□□ -1.69
SYNE2-216ENST00000555002 PRO0461Q9UI25 63 aa4.49□□□□□ -1.69
SYNE2-216ENST00000555002 S4R3F8 94 aa4.47□□□□□ -1.69
SYNE2-216ENST00000555002 SPRR4Q96PI1 79 aa4.47□□□□□ -1.69
SYNE2-216ENST00000555002 HRES1P13985 223 aa4.47□□□□□ -1.69
SYNE2-216ENST00000555002 CASC10Q5T4H9 136 aa4.46□□□□□ -1.7
SYNE2-216ENST00000555002 A0A1B0GU33 70 aa4.46□□□□□ -1.7
SYNE2-216ENST00000555002 Q8N377 158 aa4.45□□□□□ -1.7
SYNE2-216ENST00000555002 C9orf163Q8N9P6 203 aa4.44□□□□□ -1.7
SYNE2-216ENST00000555002 A0A0A0MQY5 61 aa4.44□□□□□ -1.7
SYNE2-216ENST00000555002 GCN1Q92616 2671 aaKnown RBP4.43□□□□□ -1.7
SYNE2-216ENST00000555002 NSD1Q96L73 2696 aaPredicted RBP4.42□□□□□ -1.7
SYNE2-216ENST00000555002 LITAFQ99732 161 aa4.42□□□□□ -1.7
SYNE2-216ENST00000555002 LINC00612Q8N6U2 182 aa4.42□□□□□ -1.7
SYNE2-216ENST00000555002 SPINK7P58062 85 aa4.42□□□□□ -1.7
SYNE2-216ENST00000555002 PLAC4Q8WY50 150 aa4.41□□□□□ -1.7
SYNE2-216ENST00000555002 C19orf73Q9NVV2 129 aa4.39□□□□□ -1.71
SYNE2-216ENST00000555002 H1FX-AS1Q4G0G2 97 aa4.39□□□□□ -1.71
SYNE2-216ENST00000555002 CSAG1Q6PB30 78 aa4.39□□□□□ -1.71
SYNE2-216ENST00000555002 Q5VSD8 79 aa4.39□□□□□ -1.71
SYNE2-216ENST00000555002 TNP2Q05952 138 aa4.38□□□□□ -1.71
SYNE2-216ENST00000555002 H7BZZ5 65 aa4.38□□□□□ -1.71
SYNE2-216ENST00000555002 H3BS24 57 aa4.38□□□□□ -1.71
SYNE2-216ENST00000555002 CENPFP49454 3210 aa4.37□□□□□ -1.71
SYNE2-216ENST00000555002 SPANXA2-OT1Q8N9U9 137 aa4.37□□□□□ -1.71
SYNE2-216ENST00000555002 GIG44P09565 113 aaPredicted RBP4.37□□□□□ -1.71
SYNE2-216ENST00000555002 KRTAP10-3P60369 221 aa4.37□□□□□ -1.71
SYNE2-216ENST00000555002 PRAC1Q96KF2 57 aa4.36□□□□□ -1.71
SYNE2-216ENST00000555002 CNBPP62633 177 aaKnown RBP4.36□□□□□ -1.71
SYNE2-216ENST00000555002 R4GN34 69 aa4.36□□□□□ -1.71
SYNE2-216ENST00000555002 KLKP1Q107X0 134 aa4.36□□□□□ -1.71
SYNE2-216ENST00000555002 PRR34Q9NV39 138 aa4.36□□□□□ -1.71
SYNE2-216ENST00000555002 A0A1W2PNM2 257 aa4.35□□□□□ -1.71
SYNE2-216ENST00000555002 KMT2BQ9UMN6 2715 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-216ENST00000555002 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-216ENST00000555002 ZCCHC13Q8WW36 166 aaKnown RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms