RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 DNAH3Q8TD57 4116 aa4.93□□□□□ -1.62
LIMA1-213ENST00000552720 IGKV2D-24A0A075B6R9 120 aa4.93□□□□□ -1.62
LIMA1-213ENST00000552720 TRAV10A0A0B4J240 114 aa4.93□□□□□ -1.62
LIMA1-213ENST00000552720 EGFEM1PQ0D2K5 195 aa4.93□□□□□ -1.62
LIMA1-213ENST00000552720 TRBV7-4A0A0J9YYF1 115 aa4.92□□□□□ -1.62
LIMA1-213ENST00000552720 NDUFC2-KCTD14E9PQ53 114 aa4.92□□□□□ -1.62
LIMA1-213ENST00000552720 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-213ENST00000552720 C20orf197Q8N268 126 aa4.92□□□□□ -1.62
LIMA1-213ENST00000552720 M0R378 163 aa4.92□□□□□ -1.62
LIMA1-213ENST00000552720 OXTP01178 125 aa4.92□□□□□ -1.62
LIMA1-213ENST00000552720 COL7A1Q02388 2944 aa4.92□□□□□ -1.62
LIMA1-213ENST00000552720 J3KT08 172 aa4.91□□□□□ -1.62
LIMA1-213ENST00000552720 H3BNG1 76 aa4.91□□□□□ -1.62
LIMA1-213ENST00000552720 LORP23490 312 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-213ENST00000552720 SERTAD4-AS1Q5TG53 156 aa4.91□□□□□ -1.62
LIMA1-213ENST00000552720 FAM19A5Q7Z5A7 132 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-213ENST00000552720 DPH3Q96FX2 82 aa4.91□□□□□ -1.62
LIMA1-213ENST00000552720 DEFB131BA0A096LNP1 70 aa4.9□□□□□ -1.62
LIMA1-213ENST00000552720 TMEM258P61165 79 aa4.9□□□□□ -1.62
LIMA1-213ENST00000552720 HUWE1Q7Z6Z7 4374 aaKnown RBP4.9□□□□□ -1.63
LIMA1-213ENST00000552720 DNAH9Q9NYC9 4486 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 SRRM2Q9UQ35 2752 aaKnown RBP4.89□□□□□ -1.63
LIMA1-213ENST00000552720 SYCNQ0VAF6 134 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 CASC10Q5T4H9 136 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 Q8N9L7 120 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 DEFB105AQ8NG35 78 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 TENM2Q9NT68 2774 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 TRBV7-6A0A0J9YX20 115 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 FAM168BA1KXE4 195 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 PDE6GP18545 87 aa4.89□□□□□ -1.63
LIMA1-213ENST00000552720 RPL37AP8A6NKH3 93 aa4.88□□□□□ -1.63
LIMA1-213ENST00000552720 LINC01556Q5JQF7 62 aa4.88□□□□□ -1.63
LIMA1-213ENST00000552720 C11orf45Q8TAV5 145 aa4.88□□□□□ -1.63
LIMA1-213ENST00000552720 C7orf33Q8WU49 177 aa4.88□□□□□ -1.63
LIMA1-213ENST00000552720 SNURFQ9Y675 71 aa4.88□□□□□ -1.63
LIMA1-213ENST00000552720 CXCL6P80162 114 aa4.88□□□□□ -1.63
LIMA1-213ENST00000552720 C3orf84H3BNL1 204 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 PRB2P02812 416 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-213ENST00000552720 TM2D3Q9BRN9 247 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 TRAV7A0A075B6U4 112 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 H3BQ85 93 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 KRTAP24-1Q3LI83 254 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 NKAPP1Q8N9T2 125 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 RMI2Q96E14 147 aa4.87□□□□□ -1.63
LIMA1-213ENST00000552720 RPS28P62857 69 aaKnown RBP4.86□□□□□ -1.63
LIMA1-213ENST00000552720 Q8N377 158 aa4.86□□□□□ -1.63
LIMA1-213ENST00000552720 H7BZZ5 65 aa4.86□□□□□ -1.63
LIMA1-213ENST00000552720 BPY2O14599 106 aa4.86□□□□□ -1.63
LIMA1-213ENST00000552720 KRTAP7-1Q8IUC3 87 aa4.86□□□□□ -1.63
LIMA1-213ENST00000552720 KCNQ1DNQ9H478 68 aa4.86□□□□□ -1.63
LIMA1-213ENST00000552720 CSMD3Q7Z407 3707 aa4.85□□□□□ -1.63
LIMA1-213ENST00000552720 DNAH10OSP0CZ25 163 aa4.85□□□□□ -1.63
LIMA1-213ENST00000552720 ST20-AS1Q8NBB2 130 aa4.85□□□□□ -1.63
LIMA1-213ENST00000552720 Q9BRP9 147 aa4.85□□□□□ -1.63
LIMA1-213ENST00000552720 LINC00588Q9Y4M8 146 aa4.85□□□□□ -1.63
LIMA1-213ENST00000552720 STAB2Q8WWQ8 2551 aa4.85□□□□□ -1.63
LIMA1-213ENST00000552720 SEC61GP60059 68 aa4.84□□□□□ -1.63
LIMA1-213ENST00000552720 MRAPQ8TCY5 172 aa4.84□□□□□ -1.64
LIMA1-213ENST00000552720 IGKV4-1P06312 121 aa4.83□□□□□ -1.64
LIMA1-213ENST00000552720 FAM236DA0A1B0GTK5 79 aa4.83□□□□□ -1.64
LIMA1-213ENST00000552720 KRTAP4-16G5E9R7 235 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-213ENST00000552720 FAM236CP0DP71 79 aa4.83□□□□□ -1.64
LIMA1-213ENST00000552720 KLKP1Q107X0 134 aa4.83□□□□□ -1.64
LIMA1-213ENST00000552720 NREPQ16612 68 aa4.83□□□□□ -1.64
LIMA1-213ENST00000552720 MGAM2Q2M2H8 2515 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 F8WEM9 126 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 ERC2-IT1O76042 136 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 Q6ZRX8 168 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 DNAH7Q8WXX0 4024 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 IGLV1-50A0A075B6I6 118 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 BCE1O60756 84 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 C4orf26Q17RF5 130 aa4.82□□□□□ -1.64
LIMA1-213ENST00000552720 A0A1W2PNM2 257 aa4.81□□□□□ -1.64
LIMA1-213ENST00000552720 TLX1NBP0CAT3 122 aa4.81□□□□□ -1.64
LIMA1-213ENST00000552720 Q5XG85 94 aa4.81□□□□□ -1.64
LIMA1-213ENST00000552720 IGLV5-48A0A075B6I7 105 aa4.81□□□□□ -1.64
LIMA1-213ENST00000552720 A0A0G2JQZ4 141 aa4.81□□□□□ -1.64
LIMA1-213ENST00000552720 A0A1W2PNN7 141 aa4.81□□□□□ -1.64
LIMA1-213ENST00000552720 ETDCA0A1B0GVM5 59 aa4.8□□□□□ -1.64
LIMA1-213ENST00000552720 SPRR1AP35321 89 aa4.8□□□□□ -1.64
LIMA1-213ENST00000552720 PRYO14603 147 aa4.79□□□□□ -1.64
LIMA1-213ENST00000552720 C1orf137Q5JT78 98 aa4.79□□□□□ -1.64
LIMA1-213ENST00000552720 HRCT1Q6UXD1 115 aa4.79□□□□□ -1.64
LIMA1-213ENST00000552720 MRPL55Q7Z7F7 128 aaKnown RBP4.79□□□□□ -1.64
LIMA1-213ENST00000552720 DHRS4-AS1Q9P1J3 65 aa4.79□□□□□ -1.64
LIMA1-213ENST00000552720 UBE2BP63146 152 aa4.78□□□□□ -1.64
LIMA1-213ENST00000552720 TMEM254Q8TBM7 123 aa4.78□□□□□ -1.64
LIMA1-213ENST00000552720 OCR1Q9BZK8 76 aa4.78□□□□□ -1.64
LIMA1-213ENST00000552720 IGLV5-37A0A075B6J1 123 aa4.78□□□□□ -1.64
LIMA1-213ENST00000552720 FUSP35637 526 aaKnown RBP eCLIP4.77□□□□□ -1.65
LIMA1-213ENST00000552720 KRTAP1-5Q9BYS1 174 aa4.77□□□□□ -1.65
LIMA1-213ENST00000552720 IGKV2-24A0A0C4DH68 120 aa4.77□□□□□ -1.65
LIMA1-213ENST00000552720 SMIM29Q86T20 159 aa4.77□□□□□ -1.65
LIMA1-213ENST00000552720 EPM2AB3EWF7 344 aa4.76□□□□□ -1.65
LIMA1-213ENST00000552720 Q8NBF4 154 aa4.76□□□□□ -1.65
LIMA1-213ENST00000552720 FAM30AQ9NZY2 134 aa4.76□□□□□ -1.65
LIMA1-213ENST00000552720 SERP1Q9Y6X1 66 aa4.76□□□□□ -1.65
LIMA1-213ENST00000552720 K7EIL1 84 aa4.75□□□□□ -1.65
LIMA1-213ENST00000552720 PRLHP81277 87 aa4.75□□□□□ -1.65
LIMA1-213ENST00000552720 HIGD2AQ9BW72 106 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms