RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 B9D2Q9BPU9 175 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 APLNQ9ULZ1 77 aa7.18□□□□□ -1.26
CUX1-212ENST00000547394 DEFB105AQ8NG35 78 aa7.17□□□□□ -1.26
CUX1-212ENST00000547394 OBSCN-AS1Q96MR7 158 aa7.17□□□□□ -1.26
CUX1-212ENST00000547394 DYNC2H1Q8NCM8 4307 aaKnown RBP7.16□□□□□ -1.26
CUX1-212ENST00000547394 TMEM256-PLSCR3K7ERE1 68 aa7.16□□□□□ -1.26
CUX1-212ENST00000547394 C9orf153Q5TBE3 101 aa7.16□□□□□ -1.26
CUX1-212ENST00000547394 SDIM1Q6ZPB5 146 aa7.16□□□□□ -1.26
CUX1-212ENST00000547394 MUC7Q8TAX7 377 aa7.16□□□□□ -1.26
CUX1-212ENST00000547394 UPK3BQ9BT76 320 aa7.15□□□□□ -1.26
CUX1-212ENST00000547394 ELOF1P60002 83 aaKnown RBP7.15□□□□□ -1.27
CUX1-212ENST00000547394 CHTF8P0CG12 524 aa7.14□□□□□ -1.27
CUX1-212ENST00000547394 C3orf22Q8N5N4 141 aa7.14□□□□□ -1.27
CUX1-212ENST00000547394 RMI2Q96E14 147 aa7.13□□□□□ -1.27
CUX1-212ENST00000547394 A0A087WVE0 104 aa7.12□□□□□ -1.27
CUX1-212ENST00000547394 A0A1B0GX51 115 aa7.12□□□□□ -1.27
CUX1-212ENST00000547394 A0A096LNI7 61 aa7.12□□□□□ -1.27
CUX1-212ENST00000547394 UQCRQO14949 82 aa7.12□□□□□ -1.27
CUX1-212ENST00000547394 LINC00528Q8N1L1 170 aa7.12□□□□□ -1.27
CUX1-212ENST00000547394 CCKP06307 115 aa7.11□□□□□ -1.27
CUX1-212ENST00000547394 RBM3P98179 157 aaKnown RBP7.11□□□□□ -1.27
CUX1-212ENST00000547394 ST20-AS1Q8NBB2 130 aa7.1□□□□□ -1.27
CUX1-212ENST00000547394 JMJD7-PLA2G4BH0Y9G9 81 aa7.1□□□□□ -1.27
CUX1-212ENST00000547394 A0A1W2PNN7 141 aa7.09□□□□□ -1.27
CUX1-212ENST00000547394 COX7CP15954 63 aa7.09□□□□□ -1.27
CUX1-212ENST00000547394 DNAH2Q9P225 4427 aa7.09□□□□□ -1.27
CUX1-212ENST00000547394 VPS13DQ5THJ4 4388 aa7.09□□□□□ -1.28
CUX1-212ENST00000547394 Q9BRP9 147 aa7.08□□□□□ -1.28
CUX1-212ENST00000547394 KCNQ1DNQ9H478 68 aa7.08□□□□□ -1.28
CUX1-212ENST00000547394 LOC107984640A0A0U1RRK4 108 aa7.08□□□□□ -1.28
CUX1-212ENST00000547394 ERC2-IT1O76042 136 aa7.08□□□□□ -1.28
CUX1-212ENST00000547394 TLX1NBP0CAT3 122 aa7.08□□□□□ -1.28
CUX1-212ENST00000547394 Q6ZQT0 140 aa7.08□□□□□ -1.28
CUX1-212ENST00000547394 MRPL55Q7Z7F7 128 aaKnown RBP7.08□□□□□ -1.28
CUX1-212ENST00000547394 IGLV1-50A0A075B6I6 118 aa7.07□□□□□ -1.28
CUX1-212ENST00000547394 DSCR8Q96T75 97 aa7.07□□□□□ -1.28
CUX1-212ENST00000547394 ATOX1O00244 68 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 HIST1H4AP62805 103 aaKnown RBP7.06□□□□□ -1.28
CUX1-212ENST00000547394 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.06□□□□□ -1.28
CUX1-212ENST00000547394 NBDYA0A0U1RRE5 68 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 ETDCA0A1B0GVM5 59 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 SCXQ7RTU7 201 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 CYSTM1Q9H1C7 97 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 A0A0G2JQZ4 141 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 PRLHP81277 87 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 KRTAP11-1Q8IUC1 163 aa7.06□□□□□ -1.28
CUX1-212ENST00000547394 F8WDY8 70 aa7.05□□□□□ -1.28
CUX1-212ENST00000547394 PANO1I0J062 215 aa7.05□□□□□ -1.28
CUX1-212ENST00000547394 UBE2BP63146 152 aa7.05□□□□□ -1.28
CUX1-212ENST00000547394 Q6JHZ5 121 aa7.05□□□□□ -1.28
CUX1-212ENST00000547394 FAM19A1Q7Z5A9 133 aa7.05□□□□□ -1.28
CUX1-212ENST00000547394 PHF5AQ7RTV0 110 aaKnown RBP7.04□□□□□ -1.28
CUX1-212ENST00000547394 Q6ZRX8 168 aa7.04□□□□□ -1.28
CUX1-212ENST00000547394 Q8N377 158 aa7.04□□□□□ -1.28
CUX1-212ENST00000547394 HECTD4Q9Y4D8 3996 aa7.04□□□□□ -1.28
CUX1-212ENST00000547394 NUPR2A6NF83 97 aa7.03□□□□□ -1.28
CUX1-212ENST00000547394 KRTAP4-16G5E9R7 235 aaPredicted RBP7.03□□□□□ -1.28
CUX1-212ENST00000547394 CRYGAP11844 174 aa7.03□□□□□ -1.28
CUX1-212ENST00000547394 HAMPP81172 84 aa7.03□□□□□ -1.28
CUX1-212ENST00000547394 DPH3Q96FX2 82 aa7.03□□□□□ -1.28
CUX1-212ENST00000547394 TRBV7-6A0A0J9YX20 115 aa7.02□□□□□ -1.28
CUX1-212ENST00000547394 LRCOL1A6NCL2 159 aa7.02□□□□□ -1.29
CUX1-212ENST00000547394 C3orf84H3BNL1 204 aa7.02□□□□□ -1.29
CUX1-212ENST00000547394 FRAS1Q86XX4 4008 aa7.01□□□□□ -1.29
CUX1-212ENST00000547394 C16orf90A8MZG2 172 aa7.01□□□□□ -1.29
CUX1-212ENST00000547394 HIGD2AQ9BW72 106 aa7.01□□□□□ -1.29
CUX1-212ENST00000547394 PLA2G2DQ9UNK4 145 aa7.01□□□□□ -1.29
CUX1-212ENST00000547394 LINC01547P58512 204 aaPredicted RBP7□□□□□ -1.29
CUX1-212ENST00000547394 REG3GQ6UW15 175 aa7□□□□□ -1.29
CUX1-212ENST00000547394 SERP2Q8N6R1 65 aa7□□□□□ -1.29
CUX1-212ENST00000547394 UBL5Q9BZL1 73 aa7□□□□□ -1.29
CUX1-212ENST00000547394 LOC110117498A0A087WWA1 95 aa7□□□□□ -1.29
CUX1-212ENST00000547394 CNBPP62633 177 aaKnown RBP7□□□□□ -1.29
CUX1-212ENST00000547394 Q6ZRN7 208 aaPredicted RBP7□□□□□ -1.29
CUX1-212ENST00000547394 IGLV5-37A0A075B6J1 123 aa6.99□□□□□ -1.29
CUX1-212ENST00000547394 TRBV7-4A0A0J9YYF1 115 aa6.99□□□□□ -1.29
CUX1-212ENST00000547394 PRYO14603 147 aa6.99□□□□□ -1.29
CUX1-212ENST00000547394 Q6ZVQ6 151 aa6.99□□□□□ -1.29
CUX1-212ENST00000547394 SPRR1AP35321 89 aa6.98□□□□□ -1.29
CUX1-212ENST00000547394 Q8N9L7 120 aa6.98□□□□□ -1.29
CUX1-212ENST00000547394 DNAH6Q9C0G6 4158 aa6.98□□□□□ -1.29
CUX1-212ENST00000547394 J3KT08 172 aa6.98□□□□□ -1.29
CUX1-212ENST00000547394 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.97□□□□□ -1.29
CUX1-212ENST00000547394 DHRS4-AS1Q9P1J3 65 aa6.96□□□□□ -1.29
CUX1-212ENST00000547394 GHRHP01286 108 aa6.96□□□□□ -1.3
CUX1-212ENST00000547394 C9orf163Q8N9P6 203 aa6.95□□□□□ -1.3
CUX1-212ENST00000547394 LY6G6CO95867 125 aa6.95□□□□□ -1.3
CUX1-212ENST00000547394 C5orf47Q569G3 176 aa6.95□□□□□ -1.3
CUX1-212ENST00000547394 HYDINQ4G0P3 5121 aa6.94□□□□□ -1.3
CUX1-212ENST00000547394 C14orf177Q52M58 125 aa6.93□□□□□ -1.3
CUX1-212ENST00000547394 TMEM258P61165 79 aa6.93□□□□□ -1.3
CUX1-212ENST00000547394 A0A087WTM6 91 aa6.92□□□□□ -1.3
CUX1-212ENST00000547394 A0A1W2PNM2 257 aa6.92□□□□□ -1.3
CUX1-212ENST00000547394 EPM2AB3EWF7 344 aa6.92□□□□□ -1.3
CUX1-212ENST00000547394 C1orf137Q5JT78 98 aa6.92□□□□□ -1.3
CUX1-212ENST00000547394 ATP5EP2Q5VTU8 51 aa6.91□□□□□ -1.3
CUX1-212ENST00000547394 DNAH17Q9UFH2 4485 aa6.91□□□□□ -1.3
CUX1-212ENST00000547394 PDE6GP18545 87 aa6.9□□□□□ -1.3
CUX1-212ENST00000547394 SMIM29Q86T20 159 aa6.9□□□□□ -1.3
CUX1-212ENST00000547394 DNAH8Q96JB1 4490 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms