RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 H3BUT2 72 aa8.88□□□□□ -0.99
RTN3-211ENST00000542238 SMIM13P0DJ93 91 aa8.88□□□□□ -0.99
RTN3-211ENST00000542238 PLNP26678 52 aa8.88□□□□□ -0.99
RTN3-211ENST00000542238 PFN2P35080 140 aa8.87□□□□□ -0.99
RTN3-211ENST00000542238 TMEM126AQ9H061 195 aa8.87□□□□□ -0.99
RTN3-211ENST00000542238 RPL24P83731 157 aaKnown RBP8.86□□□□□ -0.99
RTN3-211ENST00000542238 CEND1Q8N111 149 aa8.86□□□□□ -0.99
RTN3-211ENST00000542238 SPCS1Q9Y6A9 102 aa8.86□□□□□ -0.99
RTN3-211ENST00000542238 TMEM238C9JI98 176 aa8.85□□□□□ -0.99
RTN3-211ENST00000542238 FABP2P12104 132 aa8.85□□□□□ -0.99
RTN3-211ENST00000542238 FXYD2P54710 66 aa8.85□□□□□ -0.99
RTN3-211ENST00000542238 SPAG11AQ6PDA7 123 aa8.85□□□□□ -0.99
RTN3-211ENST00000542238 PLEKHB2Q96CS7 222 aa8.85□□□□□ -0.99
RTN3-211ENST00000542238 VPREB1P12018 145 aa8.84□□□□□ -0.99
RTN3-211ENST00000542238 C3orf22Q8N5N4 141 aa8.84□□□□□ -0.99
RTN3-211ENST00000542238 CHTOPQ9Y3Y2 248 aaKnown RBP8.84□□□□□ -0.99
RTN3-211ENST00000542238 M0R378 163 aa8.83□□□□□ -1
RTN3-211ENST00000542238 C21orf62-AS1Q17RA5 79 aa8.83□□□□□ -1
RTN3-211ENST00000542238 LINC00337Q8N6G1 96 aa8.83□□□□□ -1
RTN3-211ENST00000542238 VPS25Q9BRG1 176 aa8.83□□□□□ -1
RTN3-211ENST00000542238 SND1-IT1Q9HBX3 110 aa8.83□□□□□ -1
RTN3-211ENST00000542238 COX17Q14061 63 aa8.82□□□□□ -1
RTN3-211ENST00000542238 C4orf48Q5BLP8 95 aa8.82□□□□□ -1
RTN3-211ENST00000542238 FP248Q71RG6 208 aaPredicted RBP8.82□□□□□ -1
RTN3-211ENST00000542238 RAB37Q96AX2 223 aa8.82□□□□□ -1
RTN3-211ENST00000542238 HIGD2AQ9BW72 106 aa8.82□□□□□ -1
RTN3-211ENST00000542238 ERG28Q9UKR5 140 aa8.82□□□□□ -1
RTN3-211ENST00000542238 MUC17Q685J3 4493 aa8.82□□□□□ -1
RTN3-211ENST00000542238 A0A1B0GWB2 263 aa8.81□□□□□ -1
RTN3-211ENST00000542238 E9PLD3 99 aa8.81□□□□□ -1
RTN3-211ENST00000542238 TTTY13Q9BZ97 58 aa8.81□□□□□ -1
RTN3-211ENST00000542238 IGLV5-39A0A0G2JS06 123 aa8.8□□□□□ -1
RTN3-211ENST00000542238 C11orf86A6NJI1 115 aa8.8□□□□□ -1
RTN3-211ENST00000542238 ZNF22P17026 224 aaPredicted RBP8.8□□□□□ -1
RTN3-211ENST00000542238 NAA38Q9BRA0 125 aaKnown RBP8.8□□□□□ -1
RTN3-211ENST00000542238 MYMXA0A1B0GTQ4 84 aa8.79□□□□□ -1
RTN3-211ENST00000542238 NHP2Q9NX24 153 aaKnown RBP8.79□□□□□ -1
RTN3-211ENST00000542238 LINC01547P58512 204 aaPredicted RBP8.78□□□□□ -1
RTN3-211ENST00000542238 SFTA2Q6UW10 78 aa8.78□□□□□ -1
RTN3-211ENST00000542238 SPRR4Q96PI1 79 aa8.78□□□□□ -1
RTN3-211ENST00000542238 ZNF706Q9Y5V0 76 aaPredicted RBP8.78□□□□□ -1
RTN3-211ENST00000542238 K7ERJ3 54 aa8.77□□□□□ -1.01
RTN3-211ENST00000542238 ZNF625Q96I27 306 aaPredicted RBP8.77□□□□□ -1.01
RTN3-211ENST00000542238 TMEM223A0PJW6 202 aa8.76□□□□□ -1.01
RTN3-211ENST00000542238 HIST1H4GQ99525 98 aa8.76□□□□□ -1.01
RTN3-211ENST00000542238 HERVK_113P61574 105 aa8.75□□□□□ -1.01
RTN3-211ENST00000542238 KRTAP13-3Q3SY46 172 aa8.75□□□□□ -1.01
RTN3-211ENST00000542238 ASB16-AS1Q495Z4 193 aa8.75□□□□□ -1.01
RTN3-211ENST00000542238 TMEM170BQ5T4T1 132 aa8.75□□□□□ -1.01
RTN3-211ENST00000542238 F8W1H4 67 aa8.74□□□□□ -1.01
RTN3-211ENST00000542238 Q8NBF4 154 aa8.74□□□□□ -1.01
RTN3-211ENST00000542238 Q8NDZ9 215 aa8.74□□□□□ -1.01
RTN3-211ENST00000542238 TMEM238LA0A1B0GVL6 79 aa8.73□□□□□ -1.01
RTN3-211ENST00000542238 A6NJY4 79 aa8.73□□□□□ -1.01
RTN3-211ENST00000542238 DAND5Q8N907 189 aa8.73□□□□□ -1.01
RTN3-211ENST00000542238 SPINK1P00995 79 aa8.72□□□□□ -1.01
RTN3-211ENST00000542238 LINC00158P58513 81 aa8.72□□□□□ -1.01
RTN3-211ENST00000542238 SEC61BP60468 96 aaKnown RBP8.72□□□□□ -1.01
RTN3-211ENST00000542238 SPANXB1Q9NS25 103 aaPredicted RBP8.72□□□□□ -1.01
RTN3-211ENST00000542238 ZNF815PA8K554 130 aa8.71□□□□□ -1.02
RTN3-211ENST00000542238 NDUFA12Q9UI09 145 aa8.7□□□□□ -1.02
RTN3-211ENST00000542238 PRO0461Q9UI25 63 aa8.7□□□□□ -1.02
RTN3-211ENST00000542238 J3QR89 54 aa8.69□□□□□ -1.02
RTN3-211ENST00000542238 PRYO14603 147 aa8.69□□□□□ -1.02
RTN3-211ENST00000542238 LEPROTO15243 131 aa8.68□□□□□ -1.02
RTN3-211ENST00000542238 LCE2DQ5TA82 110 aaPredicted RBP8.68□□□□□ -1.02
RTN3-211ENST00000542238 LYRM7Q5U5X0 104 aa8.68□□□□□ -1.02
RTN3-211ENST00000542238 SMCR5Q8TEV8 140 aa8.68□□□□□ -1.02
RTN3-211ENST00000542238 A0A0U1RRA0 63 aa8.67□□□□□ -1.02
RTN3-211ENST00000542238 SCGB1A1P11684 91 aa8.67□□□□□ -1.02
RTN3-211ENST00000542238 HERV-K104P63124 156 aa8.67□□□□□ -1.02
RTN3-211ENST00000542238 SCGB1D4Q6XE38 83 aa8.67□□□□□ -1.02
RTN3-211ENST00000542238 ETDCA0A1B0GVM5 59 aa8.66□□□□□ -1.02
RTN3-211ENST00000542238 J3QQQ9 107 aa8.65□□□□□ -1.02
RTN3-211ENST00000542238 KRTAP4-1Q9BYQ7 146 aa8.65□□□□□ -1.02
RTN3-211ENST00000542238 KCNQ1DNQ9H478 68 aa8.65□□□□□ -1.02
RTN3-211ENST00000542238 H3BMG7 143 aa8.64□□□□□ -1.03
RTN3-211ENST00000542238 SPRR1AP35321 89 aa8.64□□□□□ -1.03
RTN3-211ENST00000542238 NCR3O14931 201 aa8.63□□□□□ -1.03
RTN3-211ENST00000542238 TSPEAR-AS2P59090 65 aa8.63□□□□□ -1.03
RTN3-211ENST00000542238 RPS29P62273 56 aaKnown RBP8.63□□□□□ -1.03
RTN3-211ENST00000542238 LINC00483Q53H64 154 aa8.63□□□□□ -1.03
RTN3-211ENST00000542238 GAGE2AQ6NT46 116 aa8.63□□□□□ -1.03
RTN3-211ENST00000542238 FSIP2Q5CZC0 6907 aa8.62□□□□□ -1.03
RTN3-211ENST00000542238 IGLV9-49A0A0B4J1Y8 123 aa8.62□□□□□ -1.03
RTN3-211ENST00000542238 LGALS3P17931 250 aaKnown RBP8.62□□□□□ -1.03
RTN3-211ENST00000542238 MEIG1Q5JSS6 88 aa8.62□□□□□ -1.03
RTN3-211ENST00000542238 KRTAP4-16G5E9R7 235 aaPredicted RBP8.61□□□□□ -1.03
RTN3-211ENST00000542238 SLC25A20O43772 301 aa8.61□□□□□ -1.03
RTN3-211ENST00000542238 MOBPQ13875 183 aa8.61□□□□□ -1.03
RTN3-211ENST00000542238 SSBP3-AS1Q7Z2R9 100 aa8.61□□□□□ -1.03
RTN3-211ENST00000542238 Q8N377 158 aa8.61□□□□□ -1.03
RTN3-211ENST00000542238 SIGMAR1Q99720 223 aa8.61□□□□□ -1.03
RTN3-211ENST00000542238 TRBV20-1A0A075B6N2 111 aa8.6□□□□□ -1.03
RTN3-211ENST00000542238 ETDBQ3ZM63 59 aa8.6□□□□□ -1.03
RTN3-211ENST00000542238 CRCT1Q9UGL9 99 aa8.6□□□□□ -1.03
RTN3-211ENST00000542238 TRBV10-3A0A0K0K1G6 114 aa8.59□□□□□ -1.03
RTN3-211ENST00000542238 MIR7-3HGQ8N6C7 128 aa8.59□□□□□ -1.03
RTN3-211ENST00000542238 A0A0B4J2C4 111 aa8.58□□□□□ -1.04
RTN3-211ENST00000542238 CFC1BP0CG36 223 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms