RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 C22orf24Q9Y442 160 aa7.74□□□□□ -1.17
CLSTN3-208ENST00000538933 TRBV10-2A0A0K0K1G8 114 aa7.73□□□□□ -1.17
CLSTN3-208ENST00000538933 A6NDN8 102 aa7.73□□□□□ -1.17
CLSTN3-208ENST00000538933 FXYD2P54710 66 aa7.73□□□□□ -1.17
CLSTN3-208ENST00000538933 PRR3P79522 188 aaKnown RBP7.73□□□□□ -1.17
CLSTN3-208ENST00000538933 MRPL55Q7Z7F7 128 aaKnown RBP7.73□□□□□ -1.17
CLSTN3-208ENST00000538933 PLAC8Q9NZF1 115 aa7.73□□□□□ -1.17
CLSTN3-208ENST00000538933 IGLV5-37A0A075B6J1 123 aa7.72□□□□□ -1.17
CLSTN3-208ENST00000538933 TRAV13-2A0A0B4J235 113 aa7.72□□□□□ -1.17
CLSTN3-208ENST00000538933 BATFQ16520 125 aa7.72□□□□□ -1.17
CLSTN3-208ENST00000538933 PHF5AQ7RTV0 110 aaKnown RBP7.72□□□□□ -1.17
CLSTN3-208ENST00000538933 NHP2Q9NX24 153 aaKnown RBP7.72□□□□□ -1.17
CLSTN3-208ENST00000538933 BVES-AS1Q5T3Y7 98 aa7.71□□□□□ -1.18
CLSTN3-208ENST00000538933 Q8NDZ9 215 aa7.71□□□□□ -1.18
CLSTN3-208ENST00000538933 C7orf33Q8WU49 177 aa7.71□□□□□ -1.18
CLSTN3-208ENST00000538933 CBY1Q9Y3M2 126 aa7.71□□□□□ -1.18
CLSTN3-208ENST00000538933 LINC00167Q96N53 147 aa7.7□□□□□ -1.18
CLSTN3-208ENST00000538933 TMEM126AQ9H061 195 aa7.7□□□□□ -1.18
CLSTN3-208ENST00000538933 IGKV2-28A0A075B6P5 120 aa7.69□□□□□ -1.18
CLSTN3-208ENST00000538933 A0A0B4J2C4 111 aa7.69□□□□□ -1.18
CLSTN3-208ENST00000538933 RPL37AP8A6NKH3 93 aa7.69□□□□□ -1.18
CLSTN3-208ENST00000538933 IGKV2D-28P01615 120 aa7.69□□□□□ -1.18
CLSTN3-208ENST00000538933 Q1RN00 199 aa7.69□□□□□ -1.18
CLSTN3-208ENST00000538933 KRTAP7-1Q8IUC3 87 aa7.69□□□□□ -1.18
CLSTN3-208ENST00000538933 TRBV10-3A0A0K0K1G6 114 aa7.68□□□□□ -1.18
CLSTN3-208ENST00000538933 CFC1BP0CG36 223 aa7.68□□□□□ -1.18
CLSTN3-208ENST00000538933 CFC1P0CG37 223 aa7.68□□□□□ -1.18
CLSTN3-208ENST00000538933 RPL13AP40429 203 aaKnown RBP7.68□□□□□ -1.18
CLSTN3-208ENST00000538933 LINC00337Q8N6G1 96 aa7.68□□□□□ -1.18
CLSTN3-208ENST00000538933 H7C2G1 150 aa7.67□□□□□ -1.18
CLSTN3-208ENST00000538933 PRO1854Q9UHT4 67 aa7.67□□□□□ -1.18
CLSTN3-208ENST00000538933 TRAV23DV6A0A075B6W5 121 aa7.66□□□□□ -1.18
CLSTN3-208ENST00000538933 IGLV1-50A0A075B6I6 118 aa7.65□□□□□ -1.18
CLSTN3-208ENST00000538933 K7ERJ3 54 aa7.65□□□□□ -1.18
CLSTN3-208ENST00000538933 PRYO14603 147 aa7.65□□□□□ -1.18
CLSTN3-208ENST00000538933 IGLV6-57P01721 117 aa7.64□□□□□ -1.19
CLSTN3-208ENST00000538933 REG3GQ6UW15 175 aa7.64□□□□□ -1.19
CLSTN3-208ENST00000538933 SPINK6Q6UWN8 80 aa7.63□□□□□ -1.19
CLSTN3-208ENST00000538933 A0A0U1RQV1 116 aa7.62□□□□□ -1.19
CLSTN3-208ENST00000538933 ETDCA0A1B0GVM5 59 aa7.62□□□□□ -1.19
CLSTN3-208ENST00000538933 PSMB2P49721 201 aa7.62□□□□□ -1.19
CLSTN3-208ENST00000538933 DIRC1Q969H9 104 aa7.62□□□□□ -1.19
CLSTN3-208ENST00000538933 A0A1B0GWB2 263 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 ZNF73O43830 326 aaPredicted RBP7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 VAMP3Q15836 100 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 C1orf137Q5JT78 98 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 FAM19A1Q7Z5A9 133 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 SMIM11BQ8TCY0 68 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 SNHG12Q9BXW3 62 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 KCNQ1DNQ9H478 68 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 FSIP2Q5CZC0 6907 aa7.61□□□□□ -1.19
CLSTN3-208ENST00000538933 UBE2AP49459 152 aa7.6□□□□□ -1.19
CLSTN3-208ENST00000538933 C6orf99Q4VX62 202 aa7.6□□□□□ -1.19
CLSTN3-208ENST00000538933 PSORS1C2Q9UIG4 136 aa7.6□□□□□ -1.19
CLSTN3-208ENST00000538933 BCE1O60756 84 aa7.58□□□□□ -1.2
CLSTN3-208ENST00000538933 TSPAN13O95857 204 aa7.58□□□□□ -1.2
CLSTN3-208ENST00000538933 COX6CP09669 75 aa7.58□□□□□ -1.2
CLSTN3-208ENST00000538933 RPL28P46779 137 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-208ENST00000538933 COL5A1-AS1Q5SY13 56 aa7.58□□□□□ -1.2
CLSTN3-208ENST00000538933 KRTAP11-1Q8IUC1 163 aa7.58□□□□□ -1.2
CLSTN3-208ENST00000538933 SCGB1C2P0DMR2 95 aa7.57□□□□□ -1.2
CLSTN3-208ENST00000538933 COX7BP24311 80 aa7.57□□□□□ -1.2
CLSTN3-208ENST00000538933 SNCGO76070 127 aa7.55□□□□□ -1.2
CLSTN3-208ENST00000538933 SPRR1AP35321 89 aa7.55□□□□□ -1.2
CLSTN3-208ENST00000538933 PRLHP81277 87 aa7.55□□□□□ -1.2
CLSTN3-208ENST00000538933 TRBV7-6A0A0J9YX20 115 aa7.54□□□□□ -1.2
CLSTN3-208ENST00000538933 H0YGX0 51 aa7.54□□□□□ -1.2
CLSTN3-208ENST00000538933 TRIAP1O43715 76 aa7.54□□□□□ -1.2
CLSTN3-208ENST00000538933 SLC25A20O43772 301 aa7.54□□□□□ -1.2
CLSTN3-208ENST00000538933 LYRM7Q5U5X0 104 aa7.54□□□□□ -1.2
CLSTN3-208ENST00000538933 NAA38Q9BRA0 125 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-208ENST00000538933 B5MCH6 92 aa7.53□□□□□ -1.2
CLSTN3-208ENST00000538933 H3BUT2 72 aa7.53□□□□□ -1.2
CLSTN3-208ENST00000538933 IGLV7-43P04211 117 aa7.53□□□□□ -1.2
CLSTN3-208ENST00000538933 ELOF1P60002 83 aaKnown RBP7.53□□□□□ -1.2
CLSTN3-208ENST00000538933 Q6ZRX8 168 aa7.53□□□□□ -1.2
CLSTN3-208ENST00000538933 HIGD2AQ9BW72 106 aa7.53□□□□□ -1.2
CLSTN3-208ENST00000538933 C9orf118A6NHY6 69 aa7.52□□□□□ -1.21
CLSTN3-208ENST00000538933 TAX1BP3O14907 124 aa7.52□□□□□ -1.21
CLSTN3-208ENST00000538933 DHRS4-AS1Q9P1J3 65 aa7.51□□□□□ -1.21
CLSTN3-208ENST00000538933 CRCT1Q9UGL9 99 aa7.51□□□□□ -1.21
CLSTN3-208ENST00000538933 KRTAP4-16G5E9R7 235 aaPredicted RBP7.5□□□□□ -1.21
CLSTN3-208ENST00000538933 H0Y9J4 135 aa7.5□□□□□ -1.21
CLSTN3-208ENST00000538933 ZNF861PO60384 105 aa7.5□□□□□ -1.21
CLSTN3-208ENST00000538933 FABP2P12104 132 aa7.49□□□□□ -1.21
CLSTN3-208ENST00000538933 hADV29S1A0JD25 119 aa7.48□□□□□ -1.21
CLSTN3-208ENST00000538933 DNAL4O96015 105 aa7.48□□□□□ -1.21
CLSTN3-208ENST00000538933 LCE2DQ5TA82 110 aaPredicted RBP7.48□□□□□ -1.21
CLSTN3-208ENST00000538933 SMCR5Q8TEV8 140 aa7.48□□□□□ -1.21
CLSTN3-208ENST00000538933 CLEC2BQ92478 149 aa7.48□□□□□ -1.21
CLSTN3-208ENST00000538933 LINC00575Q6W349 94 aa7.47□□□□□ -1.21
CLSTN3-208ENST00000538933 A0A1W2PPM0 123 aa7.46□□□□□ -1.22
CLSTN3-208ENST00000538933 KRTAP13-1Q8IUC0 172 aa7.46□□□□□ -1.22
CLSTN3-208ENST00000538933 PRR26Q8N8Z3 221 aa7.46□□□□□ -1.22
CLSTN3-208ENST00000538933 Q9BRP9 147 aa7.46□□□□□ -1.22
CLSTN3-208ENST00000538933 A0A1B0GX51 115 aa7.45□□□□□ -1.22
CLSTN3-208ENST00000538933 ATXN8Q156A1 80 aa7.45□□□□□ -1.22
CLSTN3-208ENST00000538933 PRR4Q16378 134 aa7.45□□□□□ -1.22
CLSTN3-208ENST00000538933 ZNF706Q9Y5V0 76 aaPredicted RBP7.45□□□□□ -1.22
CLSTN3-208ENST00000538933 MUC17Q685J3 4493 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms