RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 TRBV7-6A0A0J9YX20 115 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 TRBV10-3A0A0K0K1G6 114 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 FAM223BA6NKX1 122 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 KNCNA6PVL3 124 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 H3BVH4 76 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 M0R381 172 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 SH2D1AO60880 128 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 IGLV1-51P01701 117 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 RPL27AP46776 148 aaKnown RBP2.07□□□□□ -2.08
USP48-215ENST00000534705 LINC00305Q7Z4B0 112 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 PRR15Q8IV56 129 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 FAM223AQ8IWN6 122 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 RMI2Q96E14 147 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 USMG5Q96IX5 58 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 B9D2Q9BPU9 175 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 SMIM2Q9BVW6 85 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 MRPL36Q9P0J6 103 aaKnown RBP2.07□□□□□ -2.08
USP48-215ENST00000534705 PKIGQ9Y2B9 76 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 UBE2D4Q9Y2X8 147 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 DNAH2Q9P225 4427 aa2.07□□□□□ -2.08
USP48-215ENST00000534705 H3BRN7 92 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 I3L2K1 104 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 K7EIM0 57 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 LEPROTO15243 131 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 TIMM17BO60830 172 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 ATP5EP56381 51 aaPredicted RBP2.06□□□□□ -2.08
USP48-215ENST00000534705 NPC2P61916 151 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 RNASE13Q5GAN3 156 aaKnown RBP2.06□□□□□ -2.08
USP48-215ENST00000534705 UNQ9165/PRO28630Q6UXU0 137 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 GPHB5Q86YW7 130 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 SND1-IT1Q9HBX3 110 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 C8orf17Q9NRJ1 99 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 LAMTOR3Q9UHA4 124 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 ICOSQ9Y6W8 199 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 S4R3C0 116 aa2.06□□□□□ -2.08
USP48-215ENST00000534705 BIRC6Q9NR09 4857 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 HECTD4Q9Y4D8 3996 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 IGHV3-21A0A0B4J1V1 117 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 TRAV26-2A0A0B4J265 109 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 A0A1B0GVX0 72 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 I3L3M4 83 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 ZNF80P51504 273 aaPredicted RBP2.05□□□□□ -2.08
USP48-215ENST00000534705 RHOHQ15669 191 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 DEFB114Q30KQ6 69 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 ATP5EP2Q5VTU8 51 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 SFTA2Q6UW10 78 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 MUSTN1Q8IVN3 82 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 RNF182Q8N6D2 247 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 COPS9Q8WXC6 57 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 TMEM141Q96I45 108 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 SLC50A1Q9BRV3 221 aa2.05□□□□□ -2.08
USP48-215ENST00000534705 TIMM8BQ9Y5J9 83 aaPredicted RBP2.05□□□□□ -2.08
USP48-215ENST00000534705 A0A1B0GW54 56 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 K7ERS5 55 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 COX7A2LO14548 114 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 IGKV1-17P01599 117 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 CCKP06307 115 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 CTSGP08311 255 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 INAFM2P0DMQ5 153 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 XCL1P47992 114 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 POLR2KP53803 58 aaKnown RBP2.04□□□□□ -2.08
USP48-215ENST00000534705 ERHP84090 104 aaKnown RBP2.04□□□□□ -2.08
USP48-215ENST00000534705 DAZ4Q86SG3 579 aaKnown RBP2.04□□□□□ -2.08
USP48-215ENST00000534705 DNAH11Q96DT5 4516 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 SCGB3A1Q96QR1 104 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 MUC4Q99102 2169 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 TM2D3Q9BRN9 247 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 WFDC10AQ9H1F0 79 aa2.04□□□□□ -2.08
USP48-215ENST00000534705 DAZ1Q9NQZ3 744 aaKnown RBP2.04□□□□□ -2.08
USP48-215ENST00000534705 DYNC1H1Q14204 4646 aaKnown RBP2.04□□□□□ -2.08
USP48-215ENST00000534705 FAT2Q9NYQ8 4349 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 TRAV7A0A075B6U4 112 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 IGHV3OR16-8A0A075B7F1 116 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 TRBV6-5A0A0K0K1A5 114 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 NDUFA4O00483 81 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 NDUFC1O43677 76 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 ERC2-IT1O76042 136 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 PPP1R17O96001 155 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 COX6CP09669 75 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 TLX1NBP0CAT3 122 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 LINC00315P59091 139 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 MIAQ16674 131 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 LUZP6Q538Z0 58 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 C15orf56Q8N910 161 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 CLEC2BQ92478 149 aa2.03□□□□□ -2.08
USP48-215ENST00000534705 PKD1P98161 4303 aa2.03□□□□□ -2.09
USP48-215ENST00000534705 DNAH5Q8TE73 4624 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 IGKV2D-24A0A075B6R9 120 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 TRAV13-2A0A0B4J235 113 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 SPRR5A0A1B0GTR4 108 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 M0R3E3 92 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 RNASE4P34096 147 aaKnown RBP2.02□□□□□ -2.09
USP48-215ENST00000534705 SYCNQ0VAF6 134 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 NTM-AS1Q6ZSK4 140 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 SCXQ7RTU7 201 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 LINC00846Q9NV44 126 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 LENEPQ9Y5L5 61 aa2.02□□□□□ -2.09
USP48-215ENST00000534705 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.01□□□□□ -2.09
USP48-215ENST00000534705 IGKV2-28A0A075B6P5 120 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 IGHV1-58A0A0C4DH39 117 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms