RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 TMEM126AQ9H061 195 aa8.93□□□□□ -0.98
CPSF1-206ENST00000531480 PSORS1C2Q9UIG4 136 aa8.93□□□□□ -0.98
CPSF1-206ENST00000531480 PKHD1L1Q86WI1 4243 aa8.93□□□□□ -0.98
CPSF1-206ENST00000531480 NKAPP1Q8N9T2 125 aa8.92□□□□□ -0.98
CPSF1-206ENST00000531480 OR13C6PQ8NH95 151 aa8.92□□□□□ -0.98
CPSF1-206ENST00000531480 C9orf118A6NHY6 69 aa8.91□□□□□ -0.98
CPSF1-206ENST00000531480 LINC00167Q96N53 147 aa8.91□□□□□ -0.98
CPSF1-206ENST00000531480 DMBT1Q9UGM3 2413 aaPredicted RBP8.91□□□□□ -0.98
CPSF1-206ENST00000531480 M0R378 163 aa8.9□□□□□ -0.98
CPSF1-206ENST00000531480 FABP2P12104 132 aa8.9□□□□□ -0.98
CPSF1-206ENST00000531480 PSMB2P49721 201 aa8.9□□□□□ -0.98
CPSF1-206ENST00000531480 VAMP3Q15836 100 aa8.9□□□□□ -0.98
CPSF1-206ENST00000531480 SCGB1C2P0DMR2 95 aa8.89□□□□□ -0.99
CPSF1-206ENST00000531480 SOSTDC1Q6X4U4 206 aa8.89□□□□□ -0.99
CPSF1-206ENST00000531480 RPL13AP40429 203 aaKnown RBP8.88□□□□□ -0.99
CPSF1-206ENST00000531480 UBE2BP63146 152 aa8.88□□□□□ -0.99
CPSF1-206ENST00000531480 IGLV1-50A0A075B6I6 118 aa8.87□□□□□ -0.99
CPSF1-206ENST00000531480 TRBV20-1A0A075B6N2 111 aa8.86□□□□□ -0.99
CPSF1-206ENST00000531480 TAX1BP3O14907 124 aa8.86□□□□□ -0.99
CPSF1-206ENST00000531480 EIF4EBP3O60516 100 aaPredicted RBP8.86□□□□□ -0.99
CPSF1-206ENST00000531480 C1orf137Q5JT78 98 aa8.86□□□□□ -0.99
CPSF1-206ENST00000531480 GTF2H5Q6ZYL4 71 aa8.86□□□□□ -0.99
CPSF1-206ENST00000531480 H0YGX0 51 aa8.85□□□□□ -0.99
CPSF1-206ENST00000531480 H3BUT2 72 aa8.85□□□□□ -0.99
CPSF1-206ENST00000531480 H7C2G1 150 aa8.85□□□□□ -0.99
CPSF1-206ENST00000531480 K7ERJ3 54 aa8.85□□□□□ -0.99
CPSF1-206ENST00000531480 IGLV7-43P04211 117 aa8.85□□□□□ -0.99
CPSF1-206ENST00000531480 SPINK6Q6UWN8 80 aa8.85□□□□□ -0.99
CPSF1-206ENST00000531480 RPL37AP8A6NKH3 93 aa8.84□□□□□ -0.99
CPSF1-206ENST00000531480 LRP1Q07954 4544 aaKnown RBP8.84□□□□□ -0.99
CPSF1-206ENST00000531480 GAGE10A6NGK3 116 aa8.83□□□□□ -1
CPSF1-206ENST00000531480 FAT3Q8TDW7 4589 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 IGKV2-28A0A075B6P5 120 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 A0A1W2PPM0 123 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 J3QL48 77 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 NCR3O14931 201 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 TSPAN13O95857 204 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 IGKV2D-28P01615 120 aa8.82□□□□□ -1
CPSF1-206ENST00000531480 RPL28P46779 137 aaKnown RBP8.82□□□□□ -1
CPSF1-206ENST00000531480 BCE1O60756 84 aa8.81□□□□□ -1
CPSF1-206ENST00000531480 GHRHP01286 108 aa8.81□□□□□ -1
CPSF1-206ENST00000531480 KRTAP13-1Q8IUC0 172 aa8.81□□□□□ -1
CPSF1-206ENST00000531480 LINC00337Q8N6G1 96 aa8.81□□□□□ -1
CPSF1-206ENST00000531480 KRTAP29-1A8MX34 341 aaPredicted RBP8.8□□□□□ -1
CPSF1-206ENST00000531480 IGLV6-57P01721 117 aa8.8□□□□□ -1
CPSF1-206ENST00000531480 KCNQ1DNQ9H478 68 aa8.8□□□□□ -1
CPSF1-206ENST00000531480 TRBV7-6A0A0J9YX20 115 aa8.79□□□□□ -1
CPSF1-206ENST00000531480 ZNF861PO60384 105 aa8.79□□□□□ -1
CPSF1-206ENST00000531480 OXTP01178 125 aa8.79□□□□□ -1
CPSF1-206ENST00000531480 SPRR1AP35321 89 aa8.79□□□□□ -1
CPSF1-206ENST00000531480 TRAV23DV6A0A075B6W5 121 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 SLC25A20O43772 301 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 ATXN8Q156A1 80 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 REG3GQ6UW15 175 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 SMIM11BQ8TCY0 68 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 DIRC1Q969H9 104 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 SPCS1Q9Y6A9 102 aa8.78□□□□□ -1
CPSF1-206ENST00000531480 TRBV10-3A0A0K0K1G6 114 aa8.77□□□□□ -1.01
CPSF1-206ENST00000531480 A0A1B0GX51 115 aa8.77□□□□□ -1.01
CPSF1-206ENST00000531480 PRYO14603 147 aa8.77□□□□□ -1.01
CPSF1-206ENST00000531480 KRTAP4-16G5E9R7 235 aaPredicted RBP8.76□□□□□ -1.01
CPSF1-206ENST00000531480 H0Y9J4 135 aa8.76□□□□□ -1.01
CPSF1-206ENST00000531480 H3BQ85 93 aa8.76□□□□□ -1.01
CPSF1-206ENST00000531480 TRIAP1O43715 76 aa8.75□□□□□ -1.01
CPSF1-206ENST00000531480 ZNF73O43830 326 aaPredicted RBP8.75□□□□□ -1.01
CPSF1-206ENST00000531480 DNAL4O96015 105 aa8.74□□□□□ -1.01
CPSF1-206ENST00000531480 K7EP34 96 aa8.73□□□□□ -1.01
CPSF1-206ENST00000531480 LINC01600Q96MT4 127 aa8.73□□□□□ -1.01
CPSF1-206ENST00000531480 A0A1B0GV90 55 aa8.72□□□□□ -1.01
CPSF1-206ENST00000531480 C6orf99Q4VX62 202 aa8.72□□□□□ -1.01
CPSF1-206ENST00000531480 ETDCA0A1B0GVM5 59 aa8.71□□□□□ -1.02
CPSF1-206ENST00000531480 KRTAP1-4P0C5Y4 121 aa8.71□□□□□ -1.02
CPSF1-206ENST00000531480 MT1HL1P0DM35 61 aa8.71□□□□□ -1.02
CPSF1-206ENST00000531480 COX7BP24311 80 aa8.71□□□□□ -1.02
CPSF1-206ENST00000531480 UBE2V1Q13404 147 aa8.71□□□□□ -1.02
CPSF1-206ENST00000531480 FAM19A1Q7Z5A9 133 aa8.71□□□□□ -1.02
CPSF1-206ENST00000531480 NAA38Q9BRA0 125 aaKnown RBP8.71□□□□□ -1.02
CPSF1-206ENST00000531480 TRACP01848 142 aa8.7□□□□□ -1.02
CPSF1-206ENST00000531480 UBE2AP49459 152 aa8.7□□□□□ -1.02
CPSF1-206ENST00000531480 PRLHP81277 87 aa8.69□□□□□ -1.02
CPSF1-206ENST00000531480 OCIAD2Q56VL3 154 aa8.69□□□□□ -1.02
CPSF1-206ENST00000531480 DHRS4-AS1Q9P1J3 65 aa8.69□□□□□ -1.02
CPSF1-206ENST00000531480 F8W1H4 67 aa8.68□□□□□ -1.02
CPSF1-206ENST00000531480 LST1O00453 97 aa8.68□□□□□ -1.02
CPSF1-206ENST00000531480 hADV29S1A0JD25 119 aa8.67□□□□□ -1.02
CPSF1-206ENST00000531480 B5MCH6 92 aa8.67□□□□□ -1.02
CPSF1-206ENST00000531480 KRTAP10-8P60410 259 aa8.67□□□□□ -1.02
CPSF1-206ENST00000531480 TNXBP22105 4242 aa8.67□□□□□ -1.02
CPSF1-206ENST00000531480 TCL1BO95988 128 aa8.66□□□□□ -1.02
CPSF1-206ENST00000531480 ELOF1P60002 83 aaKnown RBP8.66□□□□□ -1.02
CPSF1-206ENST00000531480 H3BMG7 143 aa8.65□□□□□ -1.02
CPSF1-206ENST00000531480 LINC00575Q6W349 94 aa8.65□□□□□ -1.02
CPSF1-206ENST00000531480 Q6ZRX8 168 aa8.65□□□□□ -1.02
CPSF1-206ENST00000531480 SMCR5Q8TEV8 140 aa8.64□□□□□ -1.03
CPSF1-206ENST00000531480 HMCN2Q8NDA2 5059 aa8.64□□□□□ -1.03
CPSF1-206ENST00000531480 CLEC2BQ92478 149 aa8.63□□□□□ -1.03
CPSF1-206ENST00000531480 Q9BRP9 147 aa8.63□□□□□ -1.03
CPSF1-206ENST00000531480 ORMDL1Q9P0S3 153 aa8.63□□□□□ -1.03
CPSF1-206ENST00000531480 H3BT86 120 aa8.62□□□□□ -1.03
CPSF1-206ENST00000531480 TMEM256-PLSCR3K7ERE1 68 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms