RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TRAV13-2A0A0B4J235 113 aa9.42□□□□□ -0.9
LSM1-203ENST00000520755 PRYO14603 147 aa9.42□□□□□ -0.9
LSM1-203ENST00000520755 RPL13AP40429 203 aaKnown RBP9.42□□□□□ -0.9
LSM1-203ENST00000520755 OR13C6PQ8NH95 151 aa9.42□□□□□ -0.9
LSM1-203ENST00000520755 KCNQ1DNQ9H478 68 aa9.42□□□□□ -0.9
LSM1-203ENST00000520755 A6NDN8 102 aa9.41□□□□□ -0.9
LSM1-203ENST00000520755 M0R143 59 aa9.41□□□□□ -0.9
LSM1-203ENST00000520755 SPRR1AP35321 89 aa9.41□□□□□ -0.9
LSM1-203ENST00000520755 TMEM126AQ9H061 195 aa9.41□□□□□ -0.9
LSM1-203ENST00000520755 TRAV23DV6A0A075B6W5 121 aa9.4□□□□□ -0.9
LSM1-203ENST00000520755 PKHD1L1Q86WI1 4243 aa9.39□□□□□ -0.91
LSM1-203ENST00000520755 PCP4L1A6NKN8 68 aa9.39□□□□□ -0.91
LSM1-203ENST00000520755 KRTAP4-16G5E9R7 235 aaPredicted RBP9.39□□□□□ -0.91
LSM1-203ENST00000520755 REG3GQ6UW15 175 aa9.39□□□□□ -0.91
LSM1-203ENST00000520755 RAB37Q96AX2 223 aa9.39□□□□□ -0.91
LSM1-203ENST00000520755 SMIM11BQ8TCY0 68 aa9.37□□□□□ -0.91
LSM1-203ENST00000520755 ZNF73O43830 326 aaPredicted RBP9.36□□□□□ -0.91
LSM1-203ENST00000520755 BCE1O60756 84 aa9.36□□□□□ -0.91
LSM1-203ENST00000520755 IGLV7-43P04211 117 aa9.36□□□□□ -0.91
LSM1-203ENST00000520755 KRTAP13-1Q8IUC0 172 aa9.36□□□□□ -0.91
LSM1-203ENST00000520755 PRO1854Q9UHT4 67 aa9.36□□□□□ -0.91
LSM1-203ENST00000520755 H7C2G1 150 aa9.35□□□□□ -0.91
LSM1-203ENST00000520755 BATFQ16520 125 aa9.35□□□□□ -0.91
LSM1-203ENST00000520755 SNHG12Q9BXW3 62 aa9.35□□□□□ -0.91
LSM1-203ENST00000520755 PRLHP81277 87 aa9.34□□□□□ -0.91
LSM1-203ENST00000520755 C6orf99Q4VX62 202 aa9.34□□□□□ -0.91
LSM1-203ENST00000520755 DIRC1Q969H9 104 aa9.34□□□□□ -0.91
LSM1-203ENST00000520755 TSPAN13O95857 204 aa9.33□□□□□ -0.92
LSM1-203ENST00000520755 SPINK6Q6UWN8 80 aa9.33□□□□□ -0.92
LSM1-203ENST00000520755 FAM19A1Q7Z5A9 133 aa9.33□□□□□ -0.92
LSM1-203ENST00000520755 B5MCH6 92 aa9.32□□□□□ -0.92
LSM1-203ENST00000520755 RPL28P46779 137 aaKnown RBP9.32□□□□□ -0.92
LSM1-203ENST00000520755 CBY1Q9Y3M2 126 aa9.32□□□□□ -0.92
LSM1-203ENST00000520755 ETDCA0A1B0GVM5 59 aa9.31□□□□□ -0.92
LSM1-203ENST00000520755 Q6ZRX8 168 aa9.31□□□□□ -0.92
LSM1-203ENST00000520755 FLG2Q5D862 2391 aaPredicted RBP9.3□□□□□ -0.92
LSM1-203ENST00000520755 UBE2AP49459 152 aa9.3□□□□□ -0.92
LSM1-203ENST00000520755 ELOF1P60002 83 aaKnown RBP9.3□□□□□ -0.92
LSM1-203ENST00000520755 Q1RN00 199 aa9.3□□□□□ -0.92
LSM1-203ENST00000520755 ZNF861PO60384 105 aa9.29□□□□□ -0.92
LSM1-203ENST00000520755 Q9BRP9 147 aa9.29□□□□□ -0.92
LSM1-203ENST00000520755 MYCBP2O75592 4640 aa9.28□□□□□ -0.92
LSM1-203ENST00000520755 TRBV7-6A0A0J9YX20 115 aa9.28□□□□□ -0.92
LSM1-203ENST00000520755 H0Y9J4 135 aa9.28□□□□□ -0.92
LSM1-203ENST00000520755 TRIAP1O43715 76 aa9.28□□□□□ -0.92
LSM1-203ENST00000520755 SMCR5Q8TEV8 140 aa9.28□□□□□ -0.92
LSM1-203ENST00000520755 FAT3Q8TDW7 4589 aa9.27□□□□□ -0.93
LSM1-203ENST00000520755 COX7BP24311 80 aa9.27□□□□□ -0.93
LSM1-203ENST00000520755 LRP1Q07954 4544 aaKnown RBP9.26□□□□□ -0.93
LSM1-203ENST00000520755 NAA38Q9BRA0 125 aaKnown RBP9.26□□□□□ -0.93
LSM1-203ENST00000520755 TAX1BP3O14907 124 aa9.25□□□□□ -0.93
LSM1-203ENST00000520755 ERC2-IT1O76042 136 aa9.25□□□□□ -0.93
LSM1-203ENST00000520755 HIGD2AQ9BW72 106 aa9.24□□□□□ -0.93
LSM1-203ENST00000520755 FAM218AQ96MZ4 157 aa9.23□□□□□ -0.93
LSM1-203ENST00000520755 KRTAP29-1A8MX34 341 aaPredicted RBP9.21□□□□□ -0.94
LSM1-203ENST00000520755 OXTP01178 125 aa9.21□□□□□ -0.94
LSM1-203ENST00000520755 PSMB2P49721 201 aa9.21□□□□□ -0.94
LSM1-203ENST00000520755 LINC00575Q6W349 94 aa9.21□□□□□ -0.94
LSM1-203ENST00000520755 VAMP3Q15836 100 aa9.2□□□□□ -0.94
LSM1-203ENST00000520755 COL5A1-AS1Q5SY13 56 aa9.2□□□□□ -0.94
LSM1-203ENST00000520755 CLEC2BQ92478 149 aa9.2□□□□□ -0.94
LSM1-203ENST00000520755 H3BUT2 72 aa9.19□□□□□ -0.94
LSM1-203ENST00000520755 J3QL48 77 aa9.19□□□□□ -0.94
LSM1-203ENST00000520755 DHRS4-AS1Q9P1J3 65 aa9.19□□□□□ -0.94
LSM1-203ENST00000520755 C9orf118A6NHY6 69 aa9.18□□□□□ -0.94
LSM1-203ENST00000520755 H0YGX0 51 aa9.18□□□□□ -0.94
LSM1-203ENST00000520755 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
LSM1-203ENST00000520755 ST20-AS1Q8NBB2 130 aa9.17□□□□□ -0.94
LSM1-203ENST00000520755 LINC01600Q96MT4 127 aa9.17□□□□□ -0.94
LSM1-203ENST00000520755 hADV29S1A0JD25 119 aa9.15□□□□□ -0.94
LSM1-203ENST00000520755 COX6CP09669 75 aa9.15□□□□□ -0.94
LSM1-203ENST00000520755 SPRR4Q96PI1 79 aa9.15□□□□□ -0.94
LSM1-203ENST00000520755 LINC01547P58512 204 aaPredicted RBP9.14□□□□□ -0.95
LSM1-203ENST00000520755 A0A1W2PPM0 123 aa9.13□□□□□ -0.95
LSM1-203ENST00000520755 LST1O00453 97 aa9.13□□□□□ -0.95
LSM1-203ENST00000520755 Q6ZQY7 126 aa9.13□□□□□ -0.95
LSM1-203ENST00000520755 SLC25A20O43772 301 aa9.12□□□□□ -0.95
LSM1-203ENST00000520755 TCL1BO95988 128 aa9.12□□□□□ -0.95
LSM1-203ENST00000520755 MT1HL1P0DM35 61 aa9.12□□□□□ -0.95
LSM1-203ENST00000520755 SCGB1C2P0DMR2 95 aa9.12□□□□□ -0.95
LSM1-203ENST00000520755 PRR26Q8N8Z3 221 aa9.12□□□□□ -0.95
LSM1-203ENST00000520755 ANAPC11Q9NYG5 84 aa9.12□□□□□ -0.95
LSM1-203ENST00000520755 IGLV5-48A0A075B6I7 105 aa9.11□□□□□ -0.95
LSM1-203ENST00000520755 A0A1B0GX51 115 aa9.11□□□□□ -0.95
LSM1-203ENST00000520755 LINC00483Q53H64 154 aa9.1□□□□□ -0.95
LSM1-203ENST00000520755 ZNF706Q9Y5V0 76 aaPredicted RBP9.1□□□□□ -0.95
LSM1-203ENST00000520755 TNXBP22105 4242 aa9.09□□□□□ -0.95
LSM1-203ENST00000520755 SPRR1BP22528 89 aa9.09□□□□□ -0.95
LSM1-203ENST00000520755 GAGE2AQ6NT46 116 aa9.09□□□□□ -0.95
LSM1-203ENST00000520755 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.09□□□□□ -0.95
LSM1-203ENST00000520755 A0A087X002 238 aa9.08□□□□□ -0.96
LSM1-203ENST00000520755 KRTAP10-8P60410 259 aa9.08□□□□□ -0.96
LSM1-203ENST00000520755 LYRM7Q5U5X0 104 aa9.08□□□□□ -0.96
LSM1-203ENST00000520755 TRACP01848 142 aa9.07□□□□□ -0.96
LSM1-203ENST00000520755 FABP2P12104 132 aa9.07□□□□□ -0.96
LSM1-203ENST00000520755 Q8N377 158 aa9.07□□□□□ -0.96
LSM1-203ENST00000520755 CRYGAP11844 174 aa9.06□□□□□ -0.96
LSM1-203ENST00000520755 ATXN8Q156A1 80 aa9.06□□□□□ -0.96
LSM1-203ENST00000520755 DEFB105AQ8NG35 78 aa9.06□□□□□ -0.96
LSM1-203ENST00000520755 DMBT1Q9UGM3 2413 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms