RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ADAMTSL4-AS1Q5T5F5 129 aa9.92□□□□□ -0.82
DDX41-217ENST00000515562 SSBP3-AS1Q7Z2R9 100 aa9.92□□□□□ -0.82
DDX41-217ENST00000515562 MUC17Q685J3 4493 aa9.92□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BKO60814 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BJP06899 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BOP23527 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BBP33778 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BDP58876 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BCP62807 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST2H2BEQ16778 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BHQ93079 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BNQ99877 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 HIST1H2BMQ99879 126 aa9.91□□□□□ -0.82
DDX41-217ENST00000515562 EIF4EBP3O60516 100 aaPredicted RBP9.9□□□□□ -0.82
DDX41-217ENST00000515562 HINT1P49773 126 aaPredicted RBP9.89□□□□□ -0.83
DDX41-217ENST00000515562 LINC01545Q5VT33 79 aa9.89□□□□□ -0.83
DDX41-217ENST00000515562 SPANXCQ9NY87 97 aa9.89□□□□□ -0.83
DDX41-217ENST00000515562 TIMM17BO60830 172 aa9.88□□□□□ -0.83
DDX41-217ENST00000515562 C5orf52A6NGY3 159 aa9.87□□□□□ -0.83
DDX41-217ENST00000515562 KRTAP13-3Q3SY46 172 aa9.87□□□□□ -0.83
DDX41-217ENST00000515562 PET117Q6UWS5 81 aa9.87□□□□□ -0.83
DDX41-217ENST00000515562 LINC00308Q8TCZ7 52 aa9.87□□□□□ -0.83
DDX41-217ENST00000515562 LITAFQ99732 161 aa9.87□□□□□ -0.83
DDX41-217ENST00000515562 ZNF815PA8K554 130 aa9.85□□□□□ -0.83
DDX41-217ENST00000515562 C9orf153Q5TBE3 101 aa9.85□□□□□ -0.83
DDX41-217ENST00000515562 Q8N377 158 aa9.85□□□□□ -0.83
DDX41-217ENST00000515562 FAT4Q6V0I7 4981 aa9.84□□□□□ -0.83
DDX41-217ENST00000515562 SLC25A20O43772 301 aa9.84□□□□□ -0.83
DDX41-217ENST00000515562 OR13C6PQ8NH95 151 aa9.83□□□□□ -0.84
DDX41-217ENST00000515562 SPANXDQ9BXN6 97 aa9.83□□□□□ -0.84
DDX41-217ENST00000515562 LCE2AQ5TA79 106 aaPredicted RBP9.82□□□□□ -0.84
DDX41-217ENST00000515562 ST20-AS1Q8NBB2 130 aa9.82□□□□□ -0.84
DDX41-217ENST00000515562 DHRS4-AS1Q9P1J3 65 aa9.81□□□□□ -0.84
DDX41-217ENST00000515562 C3orf79P0CE67 100 aa9.8□□□□□ -0.84
DDX41-217ENST00000515562 SLC25A34Q6PIV7 304 aa9.8□□□□□ -0.84
DDX41-217ENST00000515562 LINC00518Q8N0U6 118 aa9.8□□□□□ -0.84
DDX41-217ENST00000515562 ASB16-AS1Q495Z4 193 aa9.79□□□□□ -0.84
DDX41-217ENST00000515562 TTTY13Q9BZ97 58 aa9.79□□□□□ -0.84
DDX41-217ENST00000515562 SPRR1BP22528 89 aa9.78□□□□□ -0.84
DDX41-217ENST00000515562 KRTDAPP60985 99 aa9.78□□□□□ -0.84
DDX41-217ENST00000515562 COA6Q5JTJ3 125 aaKnown RBP9.78□□□□□ -0.84
DDX41-217ENST00000515562 KRTAP9-2Q9BYQ4 174 aa9.78□□□□□ -0.84
DDX41-217ENST00000515562 C20orf202A1L168 122 aa9.77□□□□□ -0.85
DDX41-217ENST00000515562 ELOF1P60002 83 aaKnown RBP9.76□□□□□ -0.85
DDX41-217ENST00000515562 SEC61BP60468 96 aaKnown RBP9.76□□□□□ -0.85
DDX41-217ENST00000515562 SCGB1D4Q6XE38 83 aa9.76□□□□□ -0.85
DDX41-217ENST00000515562 COPS9Q8WXC6 57 aa9.76□□□□□ -0.85
DDX41-217ENST00000515562 COX7BP24311 80 aa9.75□□□□□ -0.85
DDX41-217ENST00000515562 C6orf99Q4VX62 202 aa9.75□□□□□ -0.85
DDX41-217ENST00000515562 LIMD2Q9BT23 127 aa9.73□□□□□ -0.85
DDX41-217ENST00000515562 LAMTOR3Q9UHA4 124 aa9.73□□□□□ -0.85
DDX41-217ENST00000515562 AKR1D1P51857 326 aa9.72□□□□□ -0.85
DDX41-217ENST00000515562 TRBV7-6A0A0J9YX20 115 aa9.71□□□□□ -0.86
DDX41-217ENST00000515562 IFITM1P13164 125 aa9.71□□□□□ -0.86
DDX41-217ENST00000515562 Q6ZVH6 145 aa9.7□□□□□ -0.86
DDX41-217ENST00000515562 ANKRD39Q53RE8 183 aa9.69□□□□□ -0.86
DDX41-217ENST00000515562 XP32Q5T750 250 aa9.69□□□□□ -0.86
DDX41-217ENST00000515562 TAL2Q16559 108 aa9.68□□□□□ -0.86
DDX41-217ENST00000515562 TEX49A0A1B0GTD5 131 aa9.67□□□□□ -0.86
DDX41-217ENST00000515562 A0A1B0GWB2 263 aa9.67□□□□□ -0.86
DDX41-217ENST00000515562 ATOH7Q8N100 152 aa9.67□□□□□ -0.86
DDX41-217ENST00000515562 A6NDN8 102 aa9.66□□□□□ -0.86
DDX41-217ENST00000515562 Q1RN00 199 aa9.66□□□□□ -0.86
DDX41-217ENST00000515562 HRCT1Q6UXD1 115 aa9.66□□□□□ -0.86
DDX41-217ENST00000515562 CD164Q04900 197 aa9.65□□□□□ -0.86
DDX41-217ENST00000515562 DEFB105AQ8NG35 78 aa9.65□□□□□ -0.86
DDX41-217ENST00000515562 PCP2Q8IVA1 136 aa9.64□□□□□ -0.87
DDX41-217ENST00000515562 PRO1933Q9H354 126 aa9.64□□□□□ -0.87
DDX41-217ENST00000515562 A4D1N5 150 aa9.63□□□□□ -0.87
DDX41-217ENST00000515562 SNRPEP62304 92 aaKnown RBP9.63□□□□□ -0.87
DDX41-217ENST00000515562 MUSTN1Q8IVN3 82 aa9.63□□□□□ -0.87
DDX41-217ENST00000515562 KRTAP4-1Q9BYQ7 146 aa9.63□□□□□ -0.87
DDX41-217ENST00000515562 TRAV13-2A0A0B4J235 113 aa9.62□□□□□ -0.87
DDX41-217ENST00000515562 LINC01547P58512 204 aaPredicted RBP9.62□□□□□ -0.87
DDX41-217ENST00000515562 IGLV5-48A0A075B6I7 105 aa9.61□□□□□ -0.87
DDX41-217ENST00000515562 KRTAP9-6A0A140TA67 174 aa9.61□□□□□ -0.87
DDX41-217ENST00000515562 NHP2Q9NX24 153 aaKnown RBP9.61□□□□□ -0.87
DDX41-217ENST00000515562 H7C2G1 150 aa9.6□□□□□ -0.87
DDX41-217ENST00000515562 SMIM29Q86T20 159 aa9.59□□□□□ -0.87
DDX41-217ENST00000515562 Q5XG85 94 aa9.58□□□□□ -0.88
DDX41-217ENST00000515562 SMIM11BQ8TCY0 68 aa9.57□□□□□ -0.88
DDX41-217ENST00000515562 C9orf92A6NGG3 77 aa9.54□□□□□ -0.88
DDX41-217ENST00000515562 HSBP1L1C9JCN9 74 aa9.54□□□□□ -0.88
DDX41-217ENST00000515562 S100A2P29034 98 aa9.54□□□□□ -0.88
DDX41-217ENST00000515562 HIST3H2BBQ8N257 126 aa9.53□□□□□ -0.88
DDX41-217ENST00000515562 HIST1H2BLQ99880 126 aa9.53□□□□□ -0.88
DDX41-217ENST00000515562 VAMP3Q15836 100 aa9.52□□□□□ -0.89
DDX41-217ENST00000515562 F8WEM9 126 aa9.5□□□□□ -0.89
DDX41-217ENST00000515562 C1orf195Q5TG92 126 aa9.5□□□□□ -0.89
DDX41-217ENST00000515562 PCOTHQ58A44 107 aa9.49□□□□□ -0.89
DDX41-217ENST00000515562 A0A0G2JQZ4 141 aa9.48□□□□□ -0.89
DDX41-217ENST00000515562 IGLV8-61A0A075B6I0 122 aa9.47□□□□□ -0.89
DDX41-217ENST00000515562 TCL1BO95988 128 aa9.47□□□□□ -0.89
DDX41-217ENST00000515562 LINC00575Q6W349 94 aa9.47□□□□□ -0.89
DDX41-217ENST00000515562 S100A6P06703 90 aa9.46□□□□□ -0.9
DDX41-217ENST00000515562 hADV29S1A0JD25 119 aa9.45□□□□□ -0.9
DDX41-217ENST00000515562 Q6ZQY7 126 aa9.45□□□□□ -0.9
DDX41-217ENST00000515562 LCE2CQ5TA81 110 aa9.42□□□□□ -0.9
DDX41-217ENST00000515562 Q6JHZ5 121 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms