RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 LINC00304Q8N9R0 145 aa9.48□□□□□ -0.89
VIM-208ENST00000497849 LITAFQ99732 161 aa9.48□□□□□ -0.89
VIM-208ENST00000497849 SPANXDQ9BXN6 97 aa9.47□□□□□ -0.89
VIM-208ENST00000497849 PPDPFQ9H3Y8 114 aa9.47□□□□□ -0.89
VIM-208ENST00000497849 SPANXCQ9NY87 97 aa9.47□□□□□ -0.89
VIM-208ENST00000497849 C22orf24Q9Y442 160 aa9.47□□□□□ -0.89
VIM-208ENST00000497849 M0R143 59 aa9.46□□□□□ -0.9
VIM-208ENST00000497849 RPL28P46779 137 aaKnown RBP9.46□□□□□ -0.9
VIM-208ENST00000497849 ADAMTSL4-AS1Q5T5F5 129 aa9.46□□□□□ -0.9
VIM-208ENST00000497849 Q6ZVH6 145 aa9.46□□□□□ -0.9
VIM-208ENST00000497849 HINT1P49773 126 aaPredicted RBP9.45□□□□□ -0.9
VIM-208ENST00000497849 COX17Q14061 63 aa9.45□□□□□ -0.9
VIM-208ENST00000497849 BCE1O60756 84 aa9.44□□□□□ -0.9
VIM-208ENST00000497849 CEND1Q8N111 149 aa9.44□□□□□ -0.9
VIM-208ENST00000497849 SND1-IT1Q9HBX3 110 aa9.44□□□□□ -0.9
VIM-208ENST00000497849 IFITM1P13164 125 aa9.43□□□□□ -0.9
VIM-208ENST00000497849 ASB16-AS1Q495Z4 193 aa9.43□□□□□ -0.9
VIM-208ENST00000497849 BVES-AS1Q5T3Y7 98 aa9.43□□□□□ -0.9
VIM-208ENST00000497849 MIR7-3HGQ8N6C7 128 aa9.43□□□□□ -0.9
VIM-208ENST00000497849 DAND5Q8N907 189 aa9.43□□□□□ -0.9
VIM-208ENST00000497849 COPS9Q8WXC6 57 aa9.43□□□□□ -0.9
VIM-208ENST00000497849 BATFQ16520 125 aa9.42□□□□□ -0.9
VIM-208ENST00000497849 MUSTN1Q8IVN3 82 aa9.42□□□□□ -0.9
VIM-208ENST00000497849 LBHQ53QV2 105 aaPredicted RBP9.41□□□□□ -0.9
VIM-208ENST00000497849 NPC2P61916 151 aa9.4□□□□□ -0.9
VIM-208ENST00000497849 RPL24P83731 157 aaKnown RBP9.4□□□□□ -0.9
VIM-208ENST00000497849 FAM229BQ4G0N7 80 aa9.4□□□□□ -0.9
VIM-208ENST00000497849 Q8NDZ9 215 aa9.4□□□□□ -0.9
VIM-208ENST00000497849 LINC00308Q8TCZ7 52 aa9.4□□□□□ -0.9
VIM-208ENST00000497849 SNHG12Q9BXW3 62 aa9.4□□□□□ -0.9
VIM-208ENST00000497849 TMEM238LA0A1B0GVL6 79 aa9.39□□□□□ -0.91
VIM-208ENST00000497849 A6NJY4 79 aa9.39□□□□□ -0.91
VIM-208ENST00000497849 FXYD2P54710 66 aa9.39□□□□□ -0.91
VIM-208ENST00000497849 MRPL55Q7Z7F7 128 aaKnown RBP9.38□□□□□ -0.91
VIM-208ENST00000497849 KRTAP13-1Q8IUC0 172 aa9.38□□□□□ -0.91
VIM-208ENST00000497849 A6NDN8 102 aa9.37□□□□□ -0.91
VIM-208ENST00000497849 EIF4EBP3O60516 100 aaPredicted RBP9.37□□□□□ -0.91
VIM-208ENST00000497849 LCE2CQ5TA81 110 aa9.37□□□□□ -0.91
VIM-208ENST00000497849 SOSTDC1Q6X4U4 206 aa9.37□□□□□ -0.91
VIM-208ENST00000497849 A4D1N5 150 aa9.36□□□□□ -0.91
VIM-208ENST00000497849 KRTAP13-3Q3SY46 172 aa9.36□□□□□ -0.91
VIM-208ENST00000497849 VPREB1P12018 145 aa9.35□□□□□ -0.91
VIM-208ENST00000497849 LOC107984156A0A0G2JMH3 177 aa9.34□□□□□ -0.91
VIM-208ENST00000497849 GAGE10A6NGK3 116 aa9.34□□□□□ -0.91
VIM-208ENST00000497849 RPL37AP8A6NKH3 93 aa9.34□□□□□ -0.91
VIM-208ENST00000497849 ARL17AQ8IVW1 177 aa9.34□□□□□ -0.91
VIM-208ENST00000497849 LINC00337Q8N6G1 96 aa9.34□□□□□ -0.91
VIM-208ENST00000497849 LINC00167Q96N53 147 aa9.34□□□□□ -0.91
VIM-208ENST00000497849 NHP2Q9NX24 153 aaKnown RBP9.34□□□□□ -0.91
VIM-208ENST00000497849 COL5A1-AS1Q5SY13 56 aa9.33□□□□□ -0.92
VIM-208ENST00000497849 FP248Q71RG6 208 aaPredicted RBP9.32□□□□□ -0.92
VIM-208ENST00000497849 IGLV5-37A0A075B6J1 123 aa9.31□□□□□ -0.92
VIM-208ENST00000497849 A0A1B0GWB2 263 aa9.31□□□□□ -0.92
VIM-208ENST00000497849 CFC1BP0CG36 223 aa9.31□□□□□ -0.92
VIM-208ENST00000497849 CFC1P0CG37 223 aa9.31□□□□□ -0.92
VIM-208ENST00000497849 NKAPP1Q8N9T2 125 aa9.31□□□□□ -0.92
VIM-208ENST00000497849 RAB37Q96AX2 223 aa9.31□□□□□ -0.92
VIM-208ENST00000497849 A0A0B4J2C4 111 aa9.3□□□□□ -0.92
VIM-208ENST00000497849 K7ERJ3 54 aa9.3□□□□□ -0.92
VIM-208ENST00000497849 NCR3O14931 201 aa9.3□□□□□ -0.92
VIM-208ENST00000497849 UBE2AP49459 152 aa9.3□□□□□ -0.92
VIM-208ENST00000497849 SEC61BP60468 96 aaKnown RBP9.3□□□□□ -0.92
VIM-208ENST00000497849 NDUFC2O95298 119 aa9.29□□□□□ -0.92
VIM-208ENST00000497849 KRTAP19-2Q3LHN2 52 aa9.28□□□□□ -0.92
VIM-208ENST00000497849 C3orf22Q8N5N4 141 aa9.28□□□□□ -0.92
VIM-208ENST00000497849 MT1HP80294 61 aa9.27□□□□□ -0.93
VIM-208ENST00000497849 PRO1854Q9UHT4 67 aa9.27□□□□□ -0.93
VIM-208ENST00000497849 M0R378 163 aa9.26□□□□□ -0.93
VIM-208ENST00000497849 IGKV2-28A0A075B6P5 120 aa9.25□□□□□ -0.93
VIM-208ENST00000497849 TRAV13-2A0A0B4J235 113 aa9.25□□□□□ -0.93
VIM-208ENST00000497849 IGKV2D-28P01615 120 aa9.25□□□□□ -0.93
VIM-208ENST00000497849 KRTAP9-7A8MTY7 169 aa9.24□□□□□ -0.93
VIM-208ENST00000497849 TAX1BP3O14907 124 aa9.24□□□□□ -0.93
VIM-208ENST00000497849 SPAG11AQ6PDA7 123 aa9.24□□□□□ -0.93
VIM-208ENST00000497849 TRBV10-2A0A0K0K1G8 114 aa9.23□□□□□ -0.93
VIM-208ENST00000497849 LORP23490 312 aaPredicted RBP9.23□□□□□ -0.93
VIM-208ENST00000497849 PRLHP81277 87 aa9.23□□□□□ -0.93
VIM-208ENST00000497849 H7C2G1 150 aa9.22□□□□□ -0.93
VIM-208ENST00000497849 OR13C6PQ8NH95 151 aa9.22□□□□□ -0.93
VIM-208ENST00000497849 TRBV10-3A0A0K0K1G6 114 aa9.21□□□□□ -0.94
VIM-208ENST00000497849 C9orf118A6NHY6 69 aa9.21□□□□□ -0.94
VIM-208ENST00000497849 Q1RN00 199 aa9.21□□□□□ -0.94
VIM-208ENST00000497849 S100A7L2Q5SY68 101 aa9.2□□□□□ -0.94
VIM-208ENST00000497849 TMEM126AQ9H061 195 aa9.19□□□□□ -0.94
VIM-208ENST00000497849 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.18□□□□□ -0.94
VIM-208ENST00000497849 H3BUT2 72 aa9.18□□□□□ -0.94
VIM-208ENST00000497849 KRTAP10-6P60371 365 aaPredicted RBP9.18□□□□□ -0.94
VIM-208ENST00000497849 NAA38Q9BRA0 125 aaKnown RBP9.18□□□□□ -0.94
VIM-208ENST00000497849 PSMB2P49721 201 aa9.17□□□□□ -0.94
VIM-208ENST00000497849 FAM19A1Q7Z5A9 133 aa9.17□□□□□ -0.94
VIM-208ENST00000497849 IGLV6-57P01721 117 aa9.16□□□□□ -0.94
VIM-208ENST00000497849 C4orf48Q5BLP8 95 aa9.15□□□□□ -0.94
VIM-208ENST00000497849 XP32Q5T750 250 aa9.15□□□□□ -0.94
VIM-208ENST00000497849 SMIM11BQ8TCY0 68 aa9.14□□□□□ -0.95
VIM-208ENST00000497849 KCNQ1DNQ9H478 68 aa9.14□□□□□ -0.95
VIM-208ENST00000497849 CBY1Q9Y3M2 126 aa9.14□□□□□ -0.95
VIM-208ENST00000497849 A0A1W2PPM0 123 aa9.13□□□□□ -0.95
VIM-208ENST00000497849 PRYO14603 147 aa9.13□□□□□ -0.95
VIM-208ENST00000497849 FABP2P12104 132 aa9.13□□□□□ -0.95
VIM-208ENST00000497849 TRIAP1O43715 76 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms