RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 RPL28P46779 137 aaKnown RBP8.91□□□□□ -0.98
BRCA1-223ENST00000494123 TMEM238LA0A1B0GVL6 79 aa8.91□□□□□ -0.98
BRCA1-223ENST00000494123 ETDCA0A1B0GVM5 59 aa8.91□□□□□ -0.98
BRCA1-223ENST00000494123 A6NJY4 79 aa8.91□□□□□ -0.98
BRCA1-223ENST00000494123 SPINK6Q6UWN8 80 aa8.91□□□□□ -0.98
BRCA1-223ENST00000494123 ZNF861PO60384 105 aa8.9□□□□□ -0.99
BRCA1-223ENST00000494123 ZNF73O43830 326 aaPredicted RBP8.89□□□□□ -0.99
BRCA1-223ENST00000494123 SPRR1AP35321 89 aa8.89□□□□□ -0.99
BRCA1-223ENST00000494123 PRLHP81277 87 aa8.89□□□□□ -0.99
BRCA1-223ENST00000494123 RAB37Q96AX2 223 aa8.88□□□□□ -0.99
BRCA1-223ENST00000494123 HINT1P49773 126 aaPredicted RBP8.87□□□□□ -0.99
BRCA1-223ENST00000494123 FXYD2P54710 66 aa8.87□□□□□ -0.99
BRCA1-223ENST00000494123 DIRC1Q969H9 104 aa8.87□□□□□ -0.99
BRCA1-223ENST00000494123 KRTAP4-16G5E9R7 235 aaPredicted RBP8.86□□□□□ -0.99
BRCA1-223ENST00000494123 CFC1BP0CG36 223 aa8.86□□□□□ -0.99
BRCA1-223ENST00000494123 CFC1P0CG37 223 aa8.86□□□□□ -0.99
BRCA1-223ENST00000494123 RPL13AP40429 203 aaKnown RBP8.86□□□□□ -0.99
BRCA1-223ENST00000494123 KRTAP13-1Q8IUC0 172 aa8.86□□□□□ -0.99
BRCA1-223ENST00000494123 A0A0B4J2C4 111 aa8.85□□□□□ -0.99
BRCA1-223ENST00000494123 H0Y9J4 135 aa8.85□□□□□ -0.99
BRCA1-223ENST00000494123 C6orf99Q4VX62 202 aa8.85□□□□□ -0.99
BRCA1-223ENST00000494123 HIGD2AQ9BW72 106 aa8.85□□□□□ -0.99
BRCA1-223ENST00000494123 B5MCH6 92 aa8.84□□□□□ -0.99
BRCA1-223ENST00000494123 CTAG1AP78358 180 aa8.83□□□□□ -1
BRCA1-223ENST00000494123 SMIM11BQ8TCY0 68 aa8.83□□□□□ -1
BRCA1-223ENST00000494123 NHP2Q9NX24 153 aaKnown RBP8.83□□□□□ -1
BRCA1-223ENST00000494123 H7C2G1 150 aa8.83□□□□□ -1
BRCA1-223ENST00000494123 Q6ZRX8 168 aa8.83□□□□□ -1
BRCA1-223ENST00000494123 ABCA13Q86UQ4 5058 aa8.83□□□□□ -1
BRCA1-223ENST00000494123 COX7BP24311 80 aa8.82□□□□□ -1
BRCA1-223ENST00000494123 PRO1854Q9UHT4 67 aa8.81□□□□□ -1
BRCA1-223ENST00000494123 M0R143 59 aa8.8□□□□□ -1
BRCA1-223ENST00000494123 Q1RN00 199 aa8.8□□□□□ -1
BRCA1-223ENST00000494123 BVES-AS1Q5T3Y7 98 aa8.8□□□□□ -1
BRCA1-223ENST00000494123 FLG2Q5D862 2391 aaPredicted RBP8.8□□□□□ -1
BRCA1-223ENST00000494123 TRBV7-6A0A0J9YX20 115 aa8.8□□□□□ -1
BRCA1-223ENST00000494123 ELOF1P60002 83 aaKnown RBP8.8□□□□□ -1
BRCA1-223ENST00000494123 A0A1B0GWB2 263 aa8.79□□□□□ -1
BRCA1-223ENST00000494123 VAMP3Q15836 100 aa8.79□□□□□ -1
BRCA1-223ENST00000494123 SMCR5Q8TEV8 140 aa8.79□□□□□ -1
BRCA1-223ENST00000494123 K7ERJ3 54 aa8.78□□□□□ -1
BRCA1-223ENST00000494123 Q9BRP9 147 aa8.78□□□□□ -1
BRCA1-223ENST00000494123 DHRS4-AS1Q9P1J3 65 aa8.76□□□□□ -1.01
BRCA1-223ENST00000494123 ZNF706Q9Y5V0 76 aaPredicted RBP8.76□□□□□ -1.01
BRCA1-223ENST00000494123 PKHD1L1Q86WI1 4243 aa8.76□□□□□ -1.01
BRCA1-223ENST00000494123 ERC2-IT1O76042 136 aa8.74□□□□□ -1.01
BRCA1-223ENST00000494123 OXTP01178 125 aa8.74□□□□□ -1.01
BRCA1-223ENST00000494123 SLC25A20O43772 301 aa8.72□□□□□ -1.01
BRCA1-223ENST00000494123 KRTAP1-4P0C5Y4 121 aa8.72□□□□□ -1.01
BRCA1-223ENST00000494123 BATFQ16520 125 aa8.72□□□□□ -1.01
BRCA1-223ENST00000494123 LINC01600Q96MT4 127 aa8.72□□□□□ -1.01
BRCA1-223ENST00000494123 SPRR4Q96PI1 79 aa8.72□□□□□ -1.01
BRCA1-223ENST00000494123 KRTAP29-1A8MX34 341 aaPredicted RBP8.71□□□□□ -1.02
BRCA1-223ENST00000494123 PSMB2P49721 201 aa8.71□□□□□ -1.02
BRCA1-223ENST00000494123 PCLOQ9Y6V0 5065 aa8.71□□□□□ -1.02
BRCA1-223ENST00000494123 TSPAN13O95857 204 aa8.7□□□□□ -1.02
BRCA1-223ENST00000494123 GAGE2AQ6NT46 116 aa8.7□□□□□ -1.02
BRCA1-223ENST00000494123 MYCBP2O75592 4640 aa8.7□□□□□ -1.02
BRCA1-223ENST00000494123 H0YGX0 51 aa8.69□□□□□ -1.02
BRCA1-223ENST00000494123 J3QL48 77 aa8.69□□□□□ -1.02
BRCA1-223ENST00000494123 LINC00575Q6W349 94 aa8.69□□□□□ -1.02
BRCA1-223ENST00000494123 ANAPC11Q9NYG5 84 aa8.69□□□□□ -1.02
BRCA1-223ENST00000494123 TRIAP1O43715 76 aa8.69□□□□□ -1.02
BRCA1-223ENST00000494123 ST20-AS1Q8NBB2 130 aa8.69□□□□□ -1.02
BRCA1-223ENST00000494123 hADV29S1A0JD25 119 aa8.68□□□□□ -1.02
BRCA1-223ENST00000494123 COX6CP09669 75 aa8.68□□□□□ -1.02
BRCA1-223ENST00000494123 CRYGAP11844 174 aa8.68□□□□□ -1.02
BRCA1-223ENST00000494123 FAM229BQ4G0N7 80 aa8.68□□□□□ -1.02
BRCA1-223ENST00000494123 PRR26Q8N8Z3 221 aa8.68□□□□□ -1.02
BRCA1-223ENST00000494123 SNCGO76070 127 aa8.67□□□□□ -1.02
BRCA1-223ENST00000494123 PCP4L1A6NKN8 68 aa8.66□□□□□ -1.02
BRCA1-223ENST00000494123 A0A087X002 238 aa8.65□□□□□ -1.02
BRCA1-223ENST00000494123 LRP1Q07954 4544 aaKnown RBP8.65□□□□□ -1.02
BRCA1-223ENST00000494123 LINC00483Q53H64 154 aa8.65□□□□□ -1.03
BRCA1-223ENST00000494123 DEFB105AQ8NG35 78 aa8.65□□□□□ -1.03
BRCA1-223ENST00000494123 SCGB1C2P0DMR2 95 aa8.64□□□□□ -1.03
BRCA1-223ENST00000494123 Q6ZQY7 126 aa8.63□□□□□ -1.03
BRCA1-223ENST00000494123 FAT3Q8TDW7 4589 aa8.63□□□□□ -1.03
BRCA1-223ENST00000494123 CLEC2BQ92478 149 aa8.62□□□□□ -1.03
BRCA1-223ENST00000494123 FAM218AQ96MZ4 157 aa8.62□□□□□ -1.03
BRCA1-223ENST00000494123 TEX49A0A1B0GTD5 131 aa8.62□□□□□ -1.03
BRCA1-223ENST00000494123 MT1HL1P0DM35 61 aa8.62□□□□□ -1.03
BRCA1-223ENST00000494123 KRTAP10-8P60410 259 aa8.62□□□□□ -1.03
BRCA1-223ENST00000494123 TYMSOSQ8TAI1 123 aa8.62□□□□□ -1.03
BRCA1-223ENST00000494123 A0A1B0GX51 115 aa8.61□□□□□ -1.03
BRCA1-223ENST00000494123 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.61□□□□□ -1.03
BRCA1-223ENST00000494123 DMBT1Q9UGM3 2413 aaPredicted RBP8.6□□□□□ -1.03
BRCA1-223ENST00000494123 IGLV5-48A0A075B6I7 105 aa8.6□□□□□ -1.03
BRCA1-223ENST00000494123 IGLV9-49A0A0B4J1Y8 123 aa8.6□□□□□ -1.03
BRCA1-223ENST00000494123 SPRR1BP22528 89 aa8.6□□□□□ -1.03
BRCA1-223ENST00000494123 KRTAP13-2Q52LG2 175 aa8.6□□□□□ -1.03
BRCA1-223ENST00000494123 NAA38Q9BRA0 125 aaKnown RBP8.6□□□□□ -1.03
BRCA1-223ENST00000494123 SNHG12Q9BXW3 62 aa8.6□□□□□ -1.03
BRCA1-223ENST00000494123 C3orf22Q8N5N4 141 aa8.59□□□□□ -1.03
BRCA1-223ENST00000494123 LAMTOR3Q9UHA4 124 aa8.59□□□□□ -1.03
BRCA1-223ENST00000494123 DNAL4O96015 105 aa8.58□□□□□ -1.04
BRCA1-223ENST00000494123 LINC01547P58512 204 aaPredicted RBP8.58□□□□□ -1.04
BRCA1-223ENST00000494123 C9orf153Q5TBE3 101 aa8.58□□□□□ -1.04
BRCA1-223ENST00000494123 OCIAD2Q56VL3 154 aa8.57□□□□□ -1.04
BRCA1-223ENST00000494123 LYRM7Q5U5X0 104 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms