RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 TSPAN13O95857 204 aa11.98□□□□□ -0.49
USP39-218ENST00000493829 C6orf99Q4VX62 202 aa11.98□□□□□ -0.49
USP39-218ENST00000493829 C1orf137Q5JT78 98 aa11.98□□□□□ -0.49
USP39-218ENST00000493829 DIRC1Q969H9 104 aa11.97□□□□□ -0.49
USP39-218ENST00000493829 NAA38Q9BRA0 125 aaKnown RBP11.97□□□□□ -0.49
USP39-218ENST00000493829 ETDCA0A1B0GVM5 59 aa11.95□□□□□ -0.5
USP39-218ENST00000493829 RPL37AP61513 92 aaKnown RBP11.95□□□□□ -0.5
USP39-218ENST00000493829 FAM19A1Q7Z5A9 133 aa11.95□□□□□ -0.5
USP39-218ENST00000493829 PRLHP81277 87 aa11.94□□□□□ -0.5
USP39-218ENST00000493829 CBY1Q9Y3M2 126 aa11.94□□□□□ -0.5
USP39-218ENST00000493829 KIAA1109Q2LD37 5005 aa11.94□□□□□ -0.5
USP39-218ENST00000493829 BCE1O60756 84 aa11.94□□□□□ -0.5
USP39-218ENST00000493829 PSMB2P49721 201 aa11.94□□□□□ -0.5
USP39-218ENST00000493829 HSPG2P98160 4391 aa11.93□□□□□ -0.5
USP39-218ENST00000493829 SPRR1AP35321 89 aa11.93□□□□□ -0.5
USP39-218ENST00000493829 TRIAP1O43715 76 aa11.92□□□□□ -0.5
USP39-218ENST00000493829 RPL28P46779 137 aaKnown RBP11.92□□□□□ -0.5
USP39-218ENST00000493829 UBE2AP49459 152 aa11.92□□□□□ -0.5
USP39-218ENST00000493829 KRTAP4-16G5E9R7 235 aaPredicted RBP11.91□□□□□ -0.5
USP39-218ENST00000493829 RYR1P21817 5038 aa11.91□□□□□ -0.5
USP39-218ENST00000493829 COL5A1-AS1Q5SY13 56 aa11.91□□□□□ -0.5
USP39-218ENST00000493829 TAX1BP3O14907 124 aa11.9□□□□□ -0.5
USP39-218ENST00000493829 COX7BP24311 80 aa11.9□□□□□ -0.5
USP39-218ENST00000493829 B5MCH6 92 aa11.89□□□□□ -0.51
USP39-218ENST00000493829 Q5VSD8 79 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 Q6ZRX8 168 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 KRTAP17-1Q9BYP8 105 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 BIRC6Q9NR09 4857 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 FAM229AH3BQW9 127 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 H3BUT2 72 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 IGLV7-43P04211 117 aa11.87□□□□□ -0.51
USP39-218ENST00000493829 ELOF1P60002 83 aaKnown RBP11.87□□□□□ -0.51
USP39-218ENST00000493829 VAMP3Q15836 100 aa11.86□□□□□ -0.51
USP39-218ENST00000493829 HIGD2AQ9BW72 106 aa11.86□□□□□ -0.51
USP39-218ENST00000493829 FAT1Q14517 4588 aa11.86□□□□□ -0.51
USP39-218ENST00000493829 C9orf118A6NHY6 69 aa11.84□□□□□ -0.51
USP39-218ENST00000493829 KRTAP13-1Q8IUC0 172 aa11.84□□□□□ -0.51
USP39-218ENST00000493829 CLEC2BQ92478 149 aa11.84□□□□□ -0.51
USP39-218ENST00000493829 Q9BRP9 147 aa11.84□□□□□ -0.51
USP39-218ENST00000493829 TRBV7-6A0A0J9YX20 115 aa11.83□□□□□ -0.52
USP39-218ENST00000493829 SCGB1C2P0DMR2 95 aa11.83□□□□□ -0.52
USP39-218ENST00000493829 PLA2G1BP04054 148 aaKnown RBP11.82□□□□□ -0.52
USP39-218ENST00000493829 KRTAP10-4P60372 401 aaPredicted RBP11.82□□□□□ -0.52
USP39-218ENST00000493829 COX6CP09669 75 aa11.81□□□□□ -0.52
USP39-218ENST00000493829 SMCR5Q8TEV8 140 aa11.81□□□□□ -0.52
USP39-218ENST00000493829 FAM218AQ96MZ4 157 aa11.81□□□□□ -0.52
USP39-218ENST00000493829 VPS13BQ7Z7G8 4022 aa11.81□□□□□ -0.52
USP39-218ENST00000493829 ZNF861PO60384 105 aa11.81□□□□□ -0.52
USP39-218ENST00000493829 Q8N1X5 172 aa11.81□□□□□ -0.52
USP39-218ENST00000493829 ERC2-IT1O76042 136 aa11.79□□□□□ -0.52
USP39-218ENST00000493829 H0Y9J4 135 aa11.78□□□□□ -0.52
USP39-218ENST00000493829 H0YGX0 51 aa11.78□□□□□ -0.52
USP39-218ENST00000493829 LINC00575Q6W349 94 aa11.78□□□□□ -0.52
USP39-218ENST00000493829 A0A1W2PPM0 123 aa11.77□□□□□ -0.53
USP39-218ENST00000493829 DHRS4-AS1Q9P1J3 65 aa11.77□□□□□ -0.53
USP39-218ENST00000493829 SLC25A20O43772 301 aa11.76□□□□□ -0.53
USP39-218ENST00000493829 hADV29S1A0JD25 119 aa11.75□□□□□ -0.53
USP39-218ENST00000493829 SRRM2Q9UQ35 2752 aaKnown RBP11.74□□□□□ -0.53
USP39-218ENST00000493829 ST20-AS1Q8NBB2 130 aa11.74□□□□□ -0.53
USP39-218ENST00000493829 TCL1BO95988 128 aa11.73□□□□□ -0.53
USP39-218ENST00000493829 FABP2P12104 132 aa11.73□□□□□ -0.53
USP39-218ENST00000493829 LYRM7Q5U5X0 104 aa11.73□□□□□ -0.53
USP39-218ENST00000493829 INAFM2P0DMQ5 153 aa11.71□□□□□ -0.53
USP39-218ENST00000493829 Q6ZQY7 126 aa11.71□□□□□ -0.54
USP39-218ENST00000493829 LST1O00453 97 aa11.7□□□□□ -0.54
USP39-218ENST00000493829 SPINK6Q6UWN8 80 aa11.7□□□□□ -0.54
USP39-218ENST00000493829 DEFB105AQ8NG35 78 aa11.69□□□□□ -0.54
USP39-218ENST00000493829 ATXN8Q156A1 80 aa11.68□□□□□ -0.54
USP39-218ENST00000493829 KRTAP4-5Q9BYR2 181 aa11.68□□□□□ -0.54
USP39-218ENST00000493829 SNCGO76070 127 aa11.68□□□□□ -0.54
USP39-218ENST00000493829 DNAL4O96015 105 aa11.68□□□□□ -0.54
USP39-218ENST00000493829 SPCS1Q9Y6A9 102 aa11.68□□□□□ -0.54
USP39-218ENST00000493829 GAGE2AQ6NT46 116 aa11.66□□□□□ -0.54
USP39-218ENST00000493829 ANAPC11Q9NYG5 84 aa11.66□□□□□ -0.54
USP39-218ENST00000493829 SPRR4Q96PI1 79 aa11.65□□□□□ -0.54
USP39-218ENST00000493829 TRBV20-1A0A075B6N2 111 aa11.65□□□□□ -0.55
USP39-218ENST00000493829 A0A1B0GX51 115 aa11.65□□□□□ -0.55
USP39-218ENST00000493829 TRACP01848 142 aa11.64□□□□□ -0.55
USP39-218ENST00000493829 ZNF706Q9Y5V0 76 aaPredicted RBP11.64□□□□□ -0.55
USP39-218ENST00000493829 HERC2O95714 4834 aa11.64□□□□□ -0.55
USP39-218ENST00000493829 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.63□□□□□ -0.55
USP39-218ENST00000493829 H3BMG7 143 aa11.62□□□□□ -0.55
USP39-218ENST00000493829 PKHD1L1Q86WI1 4243 aa11.61□□□□□ -0.55
USP39-218ENST00000493829 K7EP34 96 aa11.61□□□□□ -0.55
USP39-218ENST00000493829 LINC01547P58512 204 aaPredicted RBP11.61□□□□□ -0.55
USP39-218ENST00000493829 MTURNQ8N3F0 131 aa11.61□□□□□ -0.55
USP39-218ENST00000493829 A0A1B0GV90 55 aa11.59□□□□□ -0.55
USP39-218ENST00000493829 ORMDL1Q9P0S3 153 aa11.59□□□□□ -0.55
USP39-218ENST00000493829 C9JAW5 83 aa11.59□□□□□ -0.55
USP39-218ENST00000493829 KRTAP1-4P0C5Y4 121 aa11.59□□□□□ -0.55
USP39-218ENST00000493829 C3orf22Q8N5N4 141 aa11.59□□□□□ -0.55
USP39-218ENST00000493829 IGLV5-48A0A075B6I7 105 aa11.58□□□□□ -0.56
USP39-218ENST00000493829 Q8N377 158 aa11.58□□□□□ -0.56
USP39-218ENST00000493829 TEX49A0A1B0GTD5 131 aa11.57□□□□□ -0.56
USP39-218ENST00000493829 LINC00483Q53H64 154 aa11.55□□□□□ -0.56
USP39-218ENST00000493829 OCIAD2Q56VL3 154 aa11.54□□□□□ -0.56
USP39-218ENST00000493829 GTF2H5Q6ZYL4 71 aa11.54□□□□□ -0.56
USP39-218ENST00000493829 A0A087X002 238 aa11.53□□□□□ -0.56
USP39-218ENST00000493829 A0A1B0GV72 72 aa11.53□□□□□ -0.56
USP39-218ENST00000493829 IGLV9-49A0A0B4J1Y8 123 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms