RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PPDPFQ9H3Y8 114 aa14.32□□□□□ -0.12
UPF3A-209ENST00000492270 TRAV23DV6A0A075B6W5 121 aa14.31□□□□□ -0.12
UPF3A-209ENST00000492270 ERC2-IT1O76042 136 aa14.31□□□□□ -0.12
UPF3A-209ENST00000492270 Q9BRP9 147 aa14.31□□□□□ -0.12
UPF3A-209ENST00000492270 S100A1P23297 94 aa14.3□□□□□ -0.12
UPF3A-209ENST00000492270 Q6ZRX8 168 aa14.29□□□□□ -0.12
UPF3A-209ENST00000492270 SPANXCQ9NY87 97 aa14.29□□□□□ -0.12
UPF3A-209ENST00000492270 RETNLBQ9BQ08 111 aa14.28□□□□□ -0.12
UPF3A-209ENST00000492270 ZNF73O43830 326 aaPredicted RBP14.26□□□□□ -0.13
UPF3A-209ENST00000492270 GAGE2AQ6NT46 116 aa14.25□□□□□ -0.13
UPF3A-209ENST00000492270 HIST3H2BBQ8N257 126 aa14.25□□□□□ -0.13
UPF3A-209ENST00000492270 LINC00483Q53H64 154 aa14.24□□□□□ -0.13
UPF3A-209ENST00000492270 SCGB1D4Q6XE38 83 aa14.23□□□□□ -0.13
UPF3A-209ENST00000492270 PCP2Q8IVA1 136 aa14.22□□□□□ -0.13
UPF3A-209ENST00000492270 OR13C6PQ8NH95 151 aa14.22□□□□□ -0.13
UPF3A-209ENST00000492270 HIST1H2BLQ99880 126 aa14.22□□□□□ -0.13
UPF3A-209ENST00000492270 SPANXDQ9BXN6 97 aa14.21□□□□□ -0.13
UPF3A-209ENST00000492270 JOSD1Q15040 202 aaPredicted RBP14.19□□□□□ -0.14
UPF3A-209ENST00000492270 Q8NBF4 154 aa14.19□□□□□ -0.14
UPF3A-209ENST00000492270 S100A2P29034 98 aa14.18□□□□□ -0.14
UPF3A-209ENST00000492270 AKR1D1P51857 326 aa14.16□□□□□ -0.14
UPF3A-209ENST00000492270 IGLV9-49A0A0B4J1Y8 123 aa14.15□□□□□ -0.14
UPF3A-209ENST00000492270 CBY1Q9Y3M2 126 aa14.15□□□□□ -0.14
UPF3A-209ENST00000492270 CTAG1AP78358 180 aa14.14□□□□□ -0.15
UPF3A-209ENST00000492270 MOBPQ13875 183 aa14.14□□□□□ -0.15
UPF3A-209ENST00000492270 SPAG11AQ6PDA7 123 aa14.14□□□□□ -0.15
UPF3A-209ENST00000492270 ST20-AS1Q8NBB2 130 aa14.14□□□□□ -0.15
UPF3A-209ENST00000492270 LINC00518Q8N0U6 118 aa14.13□□□□□ -0.15
UPF3A-209ENST00000492270 S100A6P06703 90 aa14.12□□□□□ -0.15
UPF3A-209ENST00000492270 HINT1P49773 126 aaPredicted RBP14.12□□□□□ -0.15
UPF3A-209ENST00000492270 C4orf48Q5BLP8 95 aa14.11□□□□□ -0.15
UPF3A-209ENST00000492270 IFITM1P13164 125 aa14.1□□□□□ -0.15
UPF3A-209ENST00000492270 SNRPEP62304 92 aaKnown RBP14.1□□□□□ -0.15
UPF3A-209ENST00000492270 MUSTN1Q8IVN3 82 aa14.1□□□□□ -0.15
UPF3A-209ENST00000492270 C6orf99Q4VX62 202 aa14.08□□□□□ -0.16
UPF3A-209ENST00000492270 Q6ZVH6 145 aa14.07□□□□□ -0.16
UPF3A-209ENST00000492270 COPS9Q8WXC6 57 aa14.07□□□□□ -0.16
UPF3A-209ENST00000492270 IGLV7-46A0A075B6I9 117 aa14.06□□□□□ -0.16
UPF3A-209ENST00000492270 COX7BP24311 80 aa14.06□□□□□ -0.16
UPF3A-209ENST00000492270 ELOF1P60002 83 aaKnown RBP14.06□□□□□ -0.16
UPF3A-209ENST00000492270 SSBP3-AS1Q7Z2R9 100 aa14.04□□□□□ -0.16
UPF3A-209ENST00000492270 DHRS4-AS1Q9P1J3 65 aa14.04□□□□□ -0.16
UPF3A-209ENST00000492270 SPINK1P00995 79 aa14.03□□□□□ -0.16
UPF3A-209ENST00000492270 C9orf153Q5TBE3 101 aa14.03□□□□□ -0.16
UPF3A-209ENST00000492270 A6NDN8 102 aa14.02□□□□□ -0.17
UPF3A-209ENST00000492270 C5orf52A6NGY3 159 aa14.02□□□□□ -0.17
UPF3A-209ENST00000492270 HSBP1L1C9JCN9 74 aa14.02□□□□□ -0.17
UPF3A-209ENST00000492270 TPRXLQ17RH7 258 aa14.01□□□□□ -0.17
UPF3A-209ENST00000492270 SPRR1BP22528 89 aa13.99□□□□□ -0.17
UPF3A-209ENST00000492270 SCGB1D1O95968 90 aa13.97□□□□□ -0.17
UPF3A-209ENST00000492270 TRBV7-6A0A0J9YX20 115 aa13.96□□□□□ -0.17
UPF3A-209ENST00000492270 CDIP1Q9H305 208 aa13.95□□□□□ -0.18
UPF3A-209ENST00000492270 FP248Q71RG6 208 aaPredicted RBP13.94□□□□□ -0.18
UPF3A-209ENST00000492270 Q8N377 158 aa13.94□□□□□ -0.18
UPF3A-209ENST00000492270 TRAV13-2A0A0B4J235 113 aa13.93□□□□□ -0.18
UPF3A-209ENST00000492270 A0A1B0GWB2 263 aa13.93□□□□□ -0.18
UPF3A-209ENST00000492270 RPS29P62273 56 aaKnown RBP13.93□□□□□ -0.18
UPF3A-209ENST00000492270 DEFB105AQ8NG35 78 aa13.92□□□□□ -0.18
UPF3A-209ENST00000492270 SMIM11BQ8TCY0 68 aa13.92□□□□□ -0.18
UPF3A-209ENST00000492270 MUC2Q02817 5179 aa13.91□□□□□ -0.18
UPF3A-209ENST00000492270 TAL2Q16559 108 aa13.9□□□□□ -0.18
UPF3A-209ENST00000492270 A4D1N5 150 aa13.89□□□□□ -0.19
UPF3A-209ENST00000492270 SLC25A34Q6PIV7 304 aa13.89□□□□□ -0.19
UPF3A-209ENST00000492270 Q1RN00 199 aa13.88□□□□□ -0.19
UPF3A-209ENST00000492270 LAMTOR3Q9UHA4 124 aa13.88□□□□□ -0.19
UPF3A-209ENST00000492270 LINC01547P58512 204 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-209ENST00000492270 TEX49A0A1B0GTD5 131 aa13.85□□□□□ -0.19
UPF3A-209ENST00000492270 COX8AP10176 69 aa13.85□□□□□ -0.19
UPF3A-209ENST00000492270 KRTAP13-3Q3SY46 172 aa13.85□□□□□ -0.19
UPF3A-209ENST00000492270 SLC25A20O43772 301 aa13.84□□□□□ -0.19
UPF3A-209ENST00000492270 HRCT1Q6UXD1 115 aa13.84□□□□□ -0.19
UPF3A-209ENST00000492270 MUC17Q685J3 4493 aa13.84□□□□□ -0.19
UPF3A-209ENST00000492270 SMIM29Q86T20 159 aa13.83□□□□□ -0.2
UPF3A-209ENST00000492270 IGLV5-48A0A075B6I7 105 aa13.82□□□□□ -0.2
UPF3A-209ENST00000492270 C12orf57Q99622 126 aa13.82□□□□□ -0.2
UPF3A-209ENST00000492270 HIST1H4GQ99525 98 aa13.81□□□□□ -0.2
UPF3A-209ENST00000492270 C14orf144Q96I85 54 aa13.79□□□□□ -0.2
UPF3A-209ENST00000492270 PAM16Q9Y3D7 125 aa13.79□□□□□ -0.2
UPF3A-209ENST00000492270 DLEU1O43261 78 aa13.78□□□□□ -0.2
UPF3A-209ENST00000492270 NHP2Q9NX24 153 aaKnown RBP13.78□□□□□ -0.2
UPF3A-209ENST00000492270 SPATA45Q537H7 98 aa13.76□□□□□ -0.21
UPF3A-209ENST00000492270 PRO1933Q9H354 126 aa13.75□□□□□ -0.21
UPF3A-209ENST00000492270 VAMP3Q15836 100 aa13.74□□□□□ -0.21
UPF3A-209ENST00000492270 LINC00575Q6W349 94 aa13.74□□□□□ -0.21
UPF3A-209ENST00000492270 A0A0G2JQZ4 141 aa13.73□□□□□ -0.21
UPF3A-209ENST00000492270 LIMD2Q9BT23 127 aa13.73□□□□□ -0.21
UPF3A-209ENST00000492270 VAMP8Q9BV40 100 aa13.72□□□□□ -0.21
UPF3A-209ENST00000492270 H7C2G1 150 aa13.69□□□□□ -0.22
UPF3A-209ENST00000492270 CD164Q04900 197 aa13.69□□□□□ -0.22
UPF3A-209ENST00000492270 C2orf91Q6ZV80 131 aa13.69□□□□□ -0.22
UPF3A-209ENST00000492270 Q6ZQY7 126 aa13.68□□□□□ -0.22
UPF3A-209ENST00000492270 HIGD1BQ9P298 99 aa13.68□□□□□ -0.22
UPF3A-209ENST00000492270 hADV29S1A0JD25 119 aa13.67□□□□□ -0.22
UPF3A-209ENST00000492270 CFC1BP0CG36 223 aa13.65□□□□□ -0.22
UPF3A-209ENST00000492270 CFC1P0CG37 223 aa13.65□□□□□ -0.22
UPF3A-209ENST00000492270 A0A0U1RQV1 116 aa13.64□□□□□ -0.23
UPF3A-209ENST00000492270 ASB16-AS1Q495Z4 193 aa13.62□□□□□ -0.23
UPF3A-209ENST00000492270 BVES-AS1Q5T3Y7 98 aa13.62□□□□□ -0.23
UPF3A-209ENST00000492270 XP32Q5T750 250 aa13.61□□□□□ -0.23
UPF3A-209ENST00000492270 RAB37Q96AX2 223 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms