RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 H0Y9J4 135 aa9.57□□□□□ -0.88
C9orf3-219ENST00000488186 J3QL48 77 aa9.57□□□□□ -0.88
C9orf3-219ENST00000488186 HINT1P49773 126 aaPredicted RBP9.56□□□□□ -0.88
C9orf3-219ENST00000488186 PRLHP81277 87 aa9.56□□□□□ -0.88
C9orf3-219ENST00000488186 HIGD1BQ9P298 99 aa9.56□□□□□ -0.88
C9orf3-219ENST00000488186 LRP1Q07954 4544 aaKnown RBP9.56□□□□□ -0.88
C9orf3-219ENST00000488186 FAT3Q8TDW7 4589 aa9.55□□□□□ -0.88
C9orf3-219ENST00000488186 TRAV13-2A0A0B4J235 113 aa9.55□□□□□ -0.88
C9orf3-219ENST00000488186 LINC00337Q8N6G1 96 aa9.55□□□□□ -0.88
C9orf3-219ENST00000488186 HIGD2AQ9BW72 106 aa9.54□□□□□ -0.88
C9orf3-219ENST00000488186 ZNF73O43830 326 aaPredicted RBP9.53□□□□□ -0.88
C9orf3-219ENST00000488186 SPRR1AP35321 89 aa9.53□□□□□ -0.88
C9orf3-219ENST00000488186 A4D1N5 150 aa9.52□□□□□ -0.89
C9orf3-219ENST00000488186 C2orf91Q6ZV80 131 aa9.51□□□□□ -0.89
C9orf3-219ENST00000488186 KRTAP13-1Q8IUC0 172 aa9.51□□□□□ -0.89
C9orf3-219ENST00000488186 UQCR10Q9UDW1 63 aa9.51□□□□□ -0.89
C9orf3-219ENST00000488186 SMIM6P0DI80 62 aa9.5□□□□□ -0.89
C9orf3-219ENST00000488186 B5MCH6 92 aa9.49□□□□□ -0.89
C9orf3-219ENST00000488186 TAL2Q16559 108 aa9.49□□□□□ -0.89
C9orf3-219ENST00000488186 LINC01600Q96MT4 127 aa9.49□□□□□ -0.89
C9orf3-219ENST00000488186 C12orf57Q99622 126 aa9.49□□□□□ -0.89
C9orf3-219ENST00000488186 KRTAP4-16G5E9R7 235 aaPredicted RBP9.48□□□□□ -0.89
C9orf3-219ENST00000488186 LOC105371267A0A1B0GV96 52 aa9.47□□□□□ -0.89
C9orf3-219ENST00000488186 CEND1Q8N111 149 aa9.47□□□□□ -0.89
C9orf3-219ENST00000488186 SMCR5Q8TEV8 140 aa9.47□□□□□ -0.89
C9orf3-219ENST00000488186 TMEM238LA0A1B0GVL6 79 aa9.46□□□□□ -0.9
C9orf3-219ENST00000488186 A6NJY4 79 aa9.46□□□□□ -0.9
C9orf3-219ENST00000488186 C6orf99Q4VX62 202 aa9.46□□□□□ -0.9
C9orf3-219ENST00000488186 Q6ZRX8 168 aa9.46□□□□□ -0.9
C9orf3-219ENST00000488186 RAB37Q96AX2 223 aa9.46□□□□□ -0.9
C9orf3-219ENST00000488186 ZNF706Q9Y5V0 76 aaPredicted RBP9.46□□□□□ -0.9
C9orf3-219ENST00000488186 HERC1Q15751 4861 aa9.46□□□□□ -0.9
C9orf3-219ENST00000488186 COX7BP24311 80 aa9.45□□□□□ -0.9
C9orf3-219ENST00000488186 PRO1933Q9H354 126 aa9.45□□□□□ -0.9
C9orf3-219ENST00000488186 RPL13AP40429 203 aaKnown RBP9.44□□□□□ -0.9
C9orf3-219ENST00000488186 HSD52Q0P140 79 aa9.44□□□□□ -0.9
C9orf3-219ENST00000488186 VAMP3Q15836 100 aa9.44□□□□□ -0.9
C9orf3-219ENST00000488186 SMIM11BQ8TCY0 68 aa9.43□□□□□ -0.9
C9orf3-219ENST00000488186 TRBV7-6A0A0J9YX20 115 aa9.42□□□□□ -0.9
C9orf3-219ENST00000488186 KRTAP1-4P0C5Y4 121 aa9.42□□□□□ -0.9
C9orf3-219ENST00000488186 CFC1BP0CG36 223 aa9.42□□□□□ -0.9
C9orf3-219ENST00000488186 CFC1P0CG37 223 aa9.42□□□□□ -0.9
C9orf3-219ENST00000488186 PRR26Q8N8Z3 221 aa9.42□□□□□ -0.9
C9orf3-219ENST00000488186 DHRS4-AS1Q9P1J3 65 aa9.42□□□□□ -0.9
C9orf3-219ENST00000488186 MT1HL1P0DM35 61 aa9.41□□□□□ -0.9
C9orf3-219ENST00000488186 CRYGAP11844 174 aa9.41□□□□□ -0.9
C9orf3-219ENST00000488186 Q9BRP9 147 aa9.41□□□□□ -0.9
C9orf3-219ENST00000488186 ANAPC11Q9NYG5 84 aa9.41□□□□□ -0.9
C9orf3-219ENST00000488186 A0A1B0GWB2 263 aa9.4□□□□□ -0.9
C9orf3-219ENST00000488186 H7C2G1 150 aa9.4□□□□□ -0.9
C9orf3-219ENST00000488186 ELOF1P60002 83 aaKnown RBP9.4□□□□□ -0.9
C9orf3-219ENST00000488186 TNXBP22105 4242 aa9.4□□□□□ -0.91
C9orf3-219ENST00000488186 A0A0B4J2C4 111 aa9.39□□□□□ -0.91
C9orf3-219ENST00000488186 KRTAP10-8P60410 259 aa9.39□□□□□ -0.91
C9orf3-219ENST00000488186 SPRR4Q96PI1 79 aa9.39□□□□□ -0.91
C9orf3-219ENST00000488186 ERC2-IT1O76042 136 aa9.38□□□□□ -0.91
C9orf3-219ENST00000488186 FXYD2P54710 66 aa9.38□□□□□ -0.91
C9orf3-219ENST00000488186 Q1RN00 199 aa9.38□□□□□ -0.91
C9orf3-219ENST00000488186 FAM229BQ4G0N7 80 aa9.38□□□□□ -0.91
C9orf3-219ENST00000488186 TSTD3H0UI37 97 aa9.37□□□□□ -0.91
C9orf3-219ENST00000488186 SLC25A20O43772 301 aa9.37□□□□□ -0.91
C9orf3-219ENST00000488186 GAGE2AQ6NT46 116 aa9.37□□□□□ -0.91
C9orf3-219ENST00000488186 PRO1854Q9UHT4 67 aa9.37□□□□□ -0.91
C9orf3-219ENST00000488186 NHP2Q9NX24 153 aaKnown RBP9.36□□□□□ -0.91
C9orf3-219ENST00000488186 BVES-AS1Q5T3Y7 98 aa9.35□□□□□ -0.91
C9orf3-219ENST00000488186 TYMSOSQ8TAI1 123 aa9.35□□□□□ -0.91
C9orf3-219ENST00000488186 A0A087X002 238 aa9.34□□□□□ -0.91
C9orf3-219ENST00000488186 CTAG1AP78358 180 aa9.33□□□□□ -0.92
C9orf3-219ENST00000488186 ST20-AS1Q8NBB2 130 aa9.33□□□□□ -0.92
C9orf3-219ENST00000488186 SNCGO76070 127 aa9.32□□□□□ -0.92
C9orf3-219ENST00000488186 M0R143 59 aa9.31□□□□□ -0.92
C9orf3-219ENST00000488186 DEFB105AQ8NG35 78 aa9.31□□□□□ -0.92
C9orf3-219ENST00000488186 LINC00483Q53H64 154 aa9.3□□□□□ -0.92
C9orf3-219ENST00000488186 hADV29S1A0JD25 119 aa9.29□□□□□ -0.92
C9orf3-219ENST00000488186 PSMB2P49721 201 aa9.29□□□□□ -0.92
C9orf3-219ENST00000488186 LINC00575Q6W349 94 aa9.29□□□□□ -0.92
C9orf3-219ENST00000488186 IGLV9-49A0A0B4J1Y8 123 aa9.28□□□□□ -0.92
C9orf3-219ENST00000488186 H0YGX0 51 aa9.28□□□□□ -0.92
C9orf3-219ENST00000488186 K7ERJ3 54 aa9.28□□□□□ -0.92
C9orf3-219ENST00000488186 KRTAP13-2Q52LG2 175 aa9.28□□□□□ -0.92
C9orf3-219ENST00000488186 C3orf22Q8N5N4 141 aa9.27□□□□□ -0.93
C9orf3-219ENST00000488186 KRTAP3-3Q9BYR6 98 aa9.27□□□□□ -0.93
C9orf3-219ENST00000488186 KRTAP3-2Q9BYR7 98 aa9.27□□□□□ -0.93
C9orf3-219ENST00000488186 TEX49A0A1B0GTD5 131 aa9.26□□□□□ -0.93
C9orf3-219ENST00000488186 LAMTOR3Q9UHA4 124 aa9.26□□□□□ -0.93
C9orf3-219ENST00000488186 COX6CP09669 75 aa9.25□□□□□ -0.93
C9orf3-219ENST00000488186 C4orf48Q5BLP8 95 aa9.24□□□□□ -0.93
C9orf3-219ENST00000488186 C9orf153Q5TBE3 101 aa9.24□□□□□ -0.93
C9orf3-219ENST00000488186 SPRR1BP22528 89 aa9.23□□□□□ -0.93
C9orf3-219ENST00000488186 MOBPQ13875 183 aa9.23□□□□□ -0.93
C9orf3-219ENST00000488186 LINC00304Q8N9R0 145 aa9.23□□□□□ -0.93
C9orf3-219ENST00000488186 TRIAP1O43715 76 aa9.22□□□□□ -0.93
C9orf3-219ENST00000488186 Q6ZQY7 126 aa9.22□□□□□ -0.93
C9orf3-219ENST00000488186 TSPAN13O95857 204 aa9.21□□□□□ -0.94
C9orf3-219ENST00000488186 SCGB1C2P0DMR2 95 aa9.21□□□□□ -0.94
C9orf3-219ENST00000488186 BATFQ16520 125 aa9.21□□□□□ -0.94
C9orf3-219ENST00000488186 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.21□□□□□ -0.94
C9orf3-219ENST00000488186 SSBP3-AS1Q7Z2R9 100 aa9.21□□□□□ -0.94
C9orf3-219ENST00000488186 Q8NBF4 154 aa9.2□□□□□ -0.94
C9orf3-219ENST00000488186 IGLV5-48A0A075B6I7 105 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms