RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NKAPP1Q8N9T2 125 aa10.68□□□□□ -0.7
VIM-205ENST00000485947 TAX1BP3O14907 124 aa10.67□□□□□ -0.7
VIM-205ENST00000485947 RPL13AP40429 203 aaKnown RBP10.67□□□□□ -0.7
VIM-205ENST00000485947 SERTAD4-AS1Q5TG53 156 aa10.67□□□□□ -0.7
VIM-205ENST00000485947 TMEM126AQ9H061 195 aa10.67□□□□□ -0.7
VIM-205ENST00000485947 PRR3P79522 188 aaKnown RBP10.65□□□□□ -0.7
VIM-205ENST00000485947 S100A7L2Q5SY68 101 aa10.65□□□□□ -0.7
VIM-205ENST00000485947 OR13C6PQ8NH95 151 aa10.65□□□□□ -0.7
VIM-205ENST00000485947 CBY1Q9Y3M2 126 aa10.65□□□□□ -0.7
VIM-205ENST00000485947 TSPAN13O95857 204 aa10.64□□□□□ -0.71
VIM-205ENST00000485947 FAM19A5Q7Z5A7 132 aaPredicted RBP10.64□□□□□ -0.71
VIM-205ENST00000485947 FAM168BA1KXE4 195 aa10.63□□□□□ -0.71
VIM-205ENST00000485947 C9orf118A6NHY6 69 aa10.63□□□□□ -0.71
VIM-205ENST00000485947 IGLV6-57P01721 117 aa10.63□□□□□ -0.71
VIM-205ENST00000485947 Q1RN00 199 aa10.63□□□□□ -0.71
VIM-205ENST00000485947 KRTAP7-1Q8IUC3 87 aa10.62□□□□□ -0.71
VIM-205ENST00000485947 C22orf24Q9Y442 160 aa10.62□□□□□ -0.71
VIM-205ENST00000485947 A0A1W2PNN7 141 aa10.61□□□□□ -0.71
VIM-205ENST00000485947 H7C2G1 150 aa10.61□□□□□ -0.71
VIM-205ENST00000485947 M0QXV9 152 aa10.61□□□□□ -0.71
VIM-205ENST00000485947 MRPL55Q7Z7F7 128 aaKnown RBP10.61□□□□□ -0.71
VIM-205ENST00000485947 TRBV10-3A0A0K0K1G6 114 aa10.6□□□□□ -0.71
VIM-205ENST00000485947 RPL28P46779 137 aaKnown RBP10.6□□□□□ -0.71
VIM-205ENST00000485947 H3BUT2 72 aa10.58□□□□□ -0.72
VIM-205ENST00000485947 LYRM7Q5U5X0 104 aa10.58□□□□□ -0.72
VIM-205ENST00000485947 SMIM11BQ8TCY0 68 aa10.58□□□□□ -0.72
VIM-205ENST00000485947 PSMB2P49721 201 aa10.57□□□□□ -0.72
VIM-205ENST00000485947 LINC00167Q96N53 147 aa10.57□□□□□ -0.72
VIM-205ENST00000485947 IGLV1-50A0A075B6I6 118 aa10.56□□□□□ -0.72
VIM-205ENST00000485947 TRAV23DV6A0A075B6W5 121 aa10.56□□□□□ -0.72
VIM-205ENST00000485947 COX6CP09669 75 aa10.56□□□□□ -0.72
VIM-205ENST00000485947 A0A1W2PPM0 123 aa10.55□□□□□ -0.72
VIM-205ENST00000485947 GAGE10A6NGK3 116 aa10.55□□□□□ -0.72
VIM-205ENST00000485947 PRYO14603 147 aa10.55□□□□□ -0.72
VIM-205ENST00000485947 TRIAP1O43715 76 aa10.55□□□□□ -0.72
VIM-205ENST00000485947 NAA38Q9BRA0 125 aaKnown RBP10.55□□□□□ -0.72
VIM-205ENST00000485947 KCNQ1DNQ9H478 68 aa10.55□□□□□ -0.72
VIM-205ENST00000485947 LRP1Q07954 4544 aaKnown RBP10.55□□□□□ -0.72
VIM-205ENST00000485947 FABP2P12104 132 aa10.53□□□□□ -0.72
VIM-205ENST00000485947 SPINK6Q6UWN8 80 aa10.52□□□□□ -0.73
VIM-205ENST00000485947 PHF5AQ7RTV0 110 aaKnown RBP10.52□□□□□ -0.73
VIM-205ENST00000485947 DIRC1Q969H9 104 aa10.52□□□□□ -0.73
VIM-205ENST00000485947 RPL37AP8A6NKH3 93 aa10.51□□□□□ -0.73
VIM-205ENST00000485947 H0YGX0 51 aa10.51□□□□□ -0.73
VIM-205ENST00000485947 ZNF73O43830 326 aaPredicted RBP10.51□□□□□ -0.73
VIM-205ENST00000485947 SCGB1C2P0DMR2 95 aa10.51□□□□□ -0.73
VIM-205ENST00000485947 UBE2BP63146 152 aa10.51□□□□□ -0.73
VIM-205ENST00000485947 VAMP3Q15836 100 aa10.51□□□□□ -0.73
VIM-205ENST00000485947 C6orf99Q4VX62 202 aa10.51□□□□□ -0.73
VIM-205ENST00000485947 TRBV7-6A0A0J9YX20 115 aa10.5□□□□□ -0.73
VIM-205ENST00000485947 SPRR1AP35321 89 aa10.49□□□□□ -0.73
VIM-205ENST00000485947 TRBV20-1A0A075B6N2 111 aa10.48□□□□□ -0.73
VIM-205ENST00000485947 PKHD1L1Q86WI1 4243 aa10.47□□□□□ -0.73
VIM-205ENST00000485947 MT1HL1P0DM35 61 aa10.47□□□□□ -0.73
VIM-205ENST00000485947 REG3GQ6UW15 175 aa10.47□□□□□ -0.73
VIM-205ENST00000485947 A0A1B0GV90 55 aa10.46□□□□□ -0.73
VIM-205ENST00000485947 LINC01600Q96MT4 127 aa10.46□□□□□ -0.73
VIM-205ENST00000485947 SPCS1Q9Y6A9 102 aa10.46□□□□□ -0.73
VIM-205ENST00000485947 FAT3Q8TDW7 4589 aa10.46□□□□□ -0.74
VIM-205ENST00000485947 COX7BP24311 80 aa10.45□□□□□ -0.74
VIM-205ENST00000485947 ELOF1P60002 83 aaKnown RBP10.45□□□□□ -0.74
VIM-205ENST00000485947 ETDCA0A1B0GVM5 59 aa10.44□□□□□ -0.74
VIM-205ENST00000485947 A0A1B0GX51 115 aa10.44□□□□□ -0.74
VIM-205ENST00000485947 KRTAP4-16G5E9R7 235 aaPredicted RBP10.44□□□□□ -0.74
VIM-205ENST00000485947 GTF2H5Q6ZYL4 71 aa10.44□□□□□ -0.74
VIM-205ENST00000485947 K7EP34 96 aa10.43□□□□□ -0.74
VIM-205ENST00000485947 TCL1BO95988 128 aa10.43□□□□□ -0.74
VIM-205ENST00000485947 ATXN8Q156A1 80 aa10.43□□□□□ -0.74
VIM-205ENST00000485947 LST1O00453 97 aa10.42□□□□□ -0.74
VIM-205ENST00000485947 CLEC2BQ92478 149 aa10.42□□□□□ -0.74
VIM-205ENST00000485947 PSORS1C2Q9UIG4 136 aa10.42□□□□□ -0.74
VIM-205ENST00000485947 SNCGO76070 127 aa10.41□□□□□ -0.74
VIM-205ENST00000485947 KRTAP11-1Q8IUC1 163 aa10.41□□□□□ -0.74
VIM-205ENST00000485947 RNF213Q63HN8 5207 aa10.4□□□□□ -0.74
VIM-205ENST00000485947 B5MCH6 92 aa10.4□□□□□ -0.74
VIM-205ENST00000485947 TRACP01848 142 aa10.4□□□□□ -0.74
VIM-205ENST00000485947 LINC00575Q6W349 94 aa10.4□□□□□ -0.74
VIM-205ENST00000485947 Q6ZRX8 168 aa10.4□□□□□ -0.74
VIM-205ENST00000485947 SLC25A20O43772 301 aa10.39□□□□□ -0.75
VIM-205ENST00000485947 FAM218AQ96MZ4 157 aa10.39□□□□□ -0.75
VIM-205ENST00000485947 H0Y9J4 135 aa10.38□□□□□ -0.75
VIM-205ENST00000485947 BCE1O60756 84 aa10.38□□□□□ -0.75
VIM-205ENST00000485947 FAM19A1Q7Z5A9 133 aa10.38□□□□□ -0.75
VIM-205ENST00000485947 C1orf137Q5JT78 98 aa10.37□□□□□ -0.75
VIM-205ENST00000485947 DHRS4-AS1Q9P1J3 65 aa10.37□□□□□ -0.75
VIM-205ENST00000485947 hADV29S1A0JD25 119 aa10.36□□□□□ -0.75
VIM-205ENST00000485947 DNAL4O96015 105 aa10.36□□□□□ -0.75
VIM-205ENST00000485947 H3BMG7 143 aa10.35□□□□□ -0.75
VIM-205ENST00000485947 KRTAP10-8P60410 259 aa10.35□□□□□ -0.75
VIM-205ENST00000485947 UBE2V1Q13404 147 aa10.35□□□□□ -0.75
VIM-205ENST00000485947 LRP2P98164 4655 aa10.35□□□□□ -0.75
VIM-205ENST00000485947 IGLV7-43P04211 117 aa10.34□□□□□ -0.75
VIM-205ENST00000485947 UBE2AP49459 152 aa10.34□□□□□ -0.75
VIM-205ENST00000485947 Q9BRP9 147 aa10.32□□□□□ -0.76
VIM-205ENST00000485947 PRLHP81277 87 aa10.31□□□□□ -0.76
VIM-205ENST00000485947 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.31□□□□□ -0.76
VIM-205ENST00000485947 KRTAP13-1Q8IUC0 172 aa10.31□□□□□ -0.76
VIM-205ENST00000485947 C9JAW5 83 aa10.3□□□□□ -0.76
VIM-205ENST00000485947 GHRHP01286 108 aa10.3□□□□□ -0.76
VIM-205ENST00000485947 OCIAD2Q56VL3 154 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 164.4 ms