RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SFTA2Q6UW10 78 aa9.49□□□□□ -0.89
VIM-204ENST00000478746 SMCR5Q8TEV8 140 aa9.49□□□□□ -0.89
VIM-204ENST00000478746 J3QQQ9 107 aa9.48□□□□□ -0.89
VIM-204ENST00000478746 SLC25A20O43772 301 aa9.48□□□□□ -0.89
VIM-204ENST00000478746 HSBP1L1C9JCN9 74 aa9.47□□□□□ -0.89
VIM-204ENST00000478746 RPS29P62273 56 aaKnown RBP9.47□□□□□ -0.89
VIM-204ENST00000478746 LORP23490 312 aaPredicted RBP9.46□□□□□ -0.9
VIM-204ENST00000478746 TSPEAR-AS2P59090 65 aa9.46□□□□□ -0.9
VIM-204ENST00000478746 MYMXA0A1B0GTQ4 84 aa9.45□□□□□ -0.9
VIM-204ENST00000478746 NMUP48645 174 aa9.45□□□□□ -0.9
VIM-204ENST00000478746 LINC00158P58513 81 aa9.45□□□□□ -0.9
VIM-204ENST00000478746 KRTAP10-6P60371 365 aaPredicted RBP9.45□□□□□ -0.9
VIM-204ENST00000478746 JOSD1Q15040 202 aaPredicted RBP9.45□□□□□ -0.9
VIM-204ENST00000478746 SSBP3-AS1Q7Z2R9 100 aa9.45□□□□□ -0.9
VIM-204ENST00000478746 HERV-K104P63124 156 aa9.44□□□□□ -0.9
VIM-204ENST00000478746 MOBPQ13875 183 aa9.44□□□□□ -0.9
VIM-204ENST00000478746 LINC00483Q53H64 154 aa9.44□□□□□ -0.9
VIM-204ENST00000478746 ANKRD39Q53RE8 183 aa9.44□□□□□ -0.9
VIM-204ENST00000478746 IGLV9-49A0A0B4J1Y8 123 aa9.43□□□□□ -0.9
VIM-204ENST00000478746 PRYO14603 147 aa9.43□□□□□ -0.9
VIM-204ENST00000478746 GAGE2AQ6NT46 116 aa9.43□□□□□ -0.9
VIM-204ENST00000478746 IGLV8-61A0A075B6I0 122 aa9.41□□□□□ -0.9
VIM-204ENST00000478746 A0A0U1RRA0 63 aa9.41□□□□□ -0.9
VIM-204ENST00000478746 PCOTHQ58A44 107 aa9.41□□□□□ -0.9
VIM-204ENST00000478746 MEIG1Q5JSS6 88 aa9.41□□□□□ -0.9
VIM-204ENST00000478746 ETDCA0A1B0GVM5 59 aa9.4□□□□□ -0.9
VIM-204ENST00000478746 ZNF815PA8K554 130 aa9.4□□□□□ -0.9
VIM-204ENST00000478746 LINC00587B1AMM8 73 aa9.4□□□□□ -0.9
VIM-204ENST00000478746 SPRR1AP35321 89 aa9.4□□□□□ -0.9
VIM-204ENST00000478746 PYY3Q5JQD4 70 aa9.4□□□□□ -0.9
VIM-204ENST00000478746 BOD1L2Q8IYS8 172 aa9.39□□□□□ -0.91
VIM-204ENST00000478746 VAMP8Q9BV40 100 aa9.39□□□□□ -0.91
VIM-204ENST00000478746 KCNQ1DNQ9H478 68 aa9.39□□□□□ -0.91
VIM-204ENST00000478746 TTTY13Q9BZ97 58 aa9.38□□□□□ -0.91
VIM-204ENST00000478746 KRTAP4-16G5E9R7 235 aaPredicted RBP9.37□□□□□ -0.91
VIM-204ENST00000478746 M0R2T5 61 aa9.37□□□□□ -0.91
VIM-204ENST00000478746 SMIM13P0DJ93 91 aa9.37□□□□□ -0.91
VIM-204ENST00000478746 A0A0J9YXY3 114 aa9.36□□□□□ -0.91
VIM-204ENST00000478746 NCR3O14931 201 aa9.36□□□□□ -0.91
VIM-204ENST00000478746 PCP2Q8IVA1 136 aa9.36□□□□□ -0.91
VIM-204ENST00000478746 PAM16Q9Y3D7 125 aa9.36□□□□□ -0.91
VIM-204ENST00000478746 KRTAP9-7A8MTY7 169 aa9.35□□□□□ -0.91
VIM-204ENST00000478746 SPATA45Q537H7 98 aa9.35□□□□□ -0.91
VIM-204ENST00000478746 SCGB1D4Q6XE38 83 aa9.35□□□□□ -0.91
VIM-204ENST00000478746 ERC2-IT1O76042 136 aa9.34□□□□□ -0.91
VIM-204ENST00000478746 TRBV10-3A0A0K0K1G6 114 aa9.33□□□□□ -0.92
VIM-204ENST00000478746 MIR7-3HGQ8N6C7 128 aa9.33□□□□□ -0.92
VIM-204ENST00000478746 LOC105371267A0A1B0GV96 52 aa9.32□□□□□ -0.92
VIM-204ENST00000478746 TIMM17BO60830 172 aa9.32□□□□□ -0.92
VIM-204ENST00000478746 S100A12P80511 92 aa9.32□□□□□ -0.92
VIM-204ENST00000478746 B5MCH6 92 aa9.31□□□□□ -0.92
VIM-204ENST00000478746 COX8AP10176 69 aa9.31□□□□□ -0.92
VIM-204ENST00000478746 C9orf92A6NGG3 77 aa9.29□□□□□ -0.92
VIM-204ENST00000478746 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.29□□□□□ -0.92
VIM-204ENST00000478746 SMIM6P0DI80 62 aa9.29□□□□□ -0.92
VIM-204ENST00000478746 C9orf153Q5TBE3 101 aa9.29□□□□□ -0.92
VIM-204ENST00000478746 C14orf144Q96I85 54 aa9.29□□□□□ -0.92
VIM-204ENST00000478746 MIEN1Q9BRT3 115 aa9.29□□□□□ -0.92
VIM-204ENST00000478746 ADAMTSL4-AS1Q5T5F5 129 aa9.28□□□□□ -0.92
VIM-204ENST00000478746 LITAFQ99732 161 aa9.28□□□□□ -0.92
VIM-204ENST00000478746 DLEU1O43261 78 aa9.27□□□□□ -0.93
VIM-204ENST00000478746 SLC25A34Q6PIV7 304 aa9.27□□□□□ -0.93
VIM-204ENST00000478746 Q9BRP9 147 aa9.27□□□□□ -0.93
VIM-204ENST00000478746 NPC2P61916 151 aa9.26□□□□□ -0.93
VIM-204ENST00000478746 DDTP30046 118 aa9.25□□□□□ -0.93
VIM-204ENST00000478746 COX6B2Q6YFQ2 88 aa9.25□□□□□ -0.93
VIM-204ENST00000478746 SPANXDQ9BXN6 97 aa9.25□□□□□ -0.93
VIM-204ENST00000478746 SPANXCQ9NY87 97 aa9.25□□□□□ -0.93
VIM-204ENST00000478746 Q6ZRX8 168 aa9.24□□□□□ -0.93
VIM-204ENST00000478746 Q6ZVH6 145 aa9.24□□□□□ -0.93
VIM-204ENST00000478746 LINC00308Q8TCZ7 52 aa9.24□□□□□ -0.93
VIM-204ENST00000478746 COPS9Q8WXC6 57 aa9.24□□□□□ -0.93
VIM-204ENST00000478746 LOC107984156A0A0G2JMH3 177 aa9.23□□□□□ -0.93
VIM-204ENST00000478746 ARL17AQ8IVW1 177 aa9.23□□□□□ -0.93
VIM-204ENST00000478746 FLGP20930 4061 aaPredicted RBP9.23□□□□□ -0.93
VIM-204ENST00000478746 TRBV10-2A0A0K0K1G8 114 aa9.22□□□□□ -0.93
VIM-204ENST00000478746 IFITM1P13164 125 aa9.22□□□□□ -0.93
VIM-204ENST00000478746 SOSTDC1Q6X4U4 206 aa9.22□□□□□ -0.93
VIM-204ENST00000478746 LIMD2Q9BT23 127 aa9.22□□□□□ -0.93
VIM-204ENST00000478746 SPANXB1Q9NS25 103 aaPredicted RBP9.22□□□□□ -0.93
VIM-204ENST00000478746 EIF4EBP3O60516 100 aaPredicted RBP9.2□□□□□ -0.94
VIM-204ENST00000478746 IGLV6-57P01721 117 aa9.2□□□□□ -0.94
VIM-204ENST00000478746 HIGD1BQ9P298 99 aa9.2□□□□□ -0.94
VIM-204ENST00000478746 NDUFC2O95298 119 aa9.19□□□□□ -0.94
VIM-204ENST00000478746 HRCT1Q6UXD1 115 aa9.19□□□□□ -0.94
VIM-204ENST00000478746 MUSTN1Q8IVN3 82 aa9.19□□□□□ -0.94
VIM-204ENST00000478746 HIST1H4GQ99525 98 aa9.19□□□□□ -0.94
VIM-204ENST00000478746 C12orf57Q99622 126 aa9.19□□□□□ -0.94
VIM-204ENST00000478746 UQCR10Q9UDW1 63 aa9.19□□□□□ -0.94
VIM-204ENST00000478746 S100A7L2Q5SY68 101 aa9.18□□□□□ -0.94
VIM-204ENST00000478746 C2orf91Q6ZV80 131 aa9.18□□□□□ -0.94
VIM-204ENST00000478746 PRO1933Q9H354 126 aa9.17□□□□□ -0.94
VIM-204ENST00000478746 ST20-AS1Q8NBB2 130 aa9.16□□□□□ -0.94
VIM-204ENST00000478746 TRAV23DV6A0A075B6W5 121 aa9.14□□□□□ -0.95
VIM-204ENST00000478746 LINC00518Q8N0U6 118 aa9.14□□□□□ -0.95
VIM-204ENST00000478746 TAL2Q16559 108 aa9.13□□□□□ -0.95
VIM-204ENST00000478746 TSTD3H0UI37 97 aa9.12□□□□□ -0.95
VIM-204ENST00000478746 ZNF73O43830 326 aaPredicted RBP9.12□□□□□ -0.95
VIM-204ENST00000478746 A4D1N5 150 aa9.11□□□□□ -0.95
VIM-204ENST00000478746 OR13C6PQ8NH95 151 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms