RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 LINC00308Q8TCZ7 52 aa12.53□□□□□ -0.4
COL9A3-211ENST00000477612 TRAV23DV6A0A075B6W5 121 aa12.52□□□□□ -0.41
COL9A3-211ENST00000477612 ZNF815PA8K554 130 aa12.52□□□□□ -0.41
COL9A3-211ENST00000477612 ERC2-IT1O76042 136 aa12.52□□□□□ -0.41
COL9A3-211ENST00000477612 SPANXCQ9NY87 97 aa12.52□□□□□ -0.41
COL9A3-211ENST00000477612 KRTDAPP60985 99 aa12.51□□□□□ -0.41
COL9A3-211ENST00000477612 CBY1Q9Y3M2 126 aa12.5□□□□□ -0.41
COL9A3-211ENST00000477612 RETNLBQ9BQ08 111 aa12.49□□□□□ -0.41
COL9A3-211ENST00000477612 TTTY13Q9BZ97 58 aa12.49□□□□□ -0.41
COL9A3-211ENST00000477612 PPDPFQ9H3Y8 114 aa12.49□□□□□ -0.41
COL9A3-211ENST00000477612 ZNF73O43830 326 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-211ENST00000477612 JOSD1Q15040 202 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-211ENST00000477612 GAGE2AQ6NT46 116 aa12.47□□□□□ -0.41
COL9A3-211ENST00000477612 C20orf202A1L168 122 aa12.46□□□□□ -0.41
COL9A3-211ENST00000477612 Q8NBF4 154 aa12.45□□□□□ -0.42
COL9A3-211ENST00000477612 C5orf52A6NGY3 159 aa12.44□□□□□ -0.42
COL9A3-211ENST00000477612 AKR1D1P51857 326 aa12.44□□□□□ -0.42
COL9A3-211ENST00000477612 C4orf48Q5BLP8 95 aa12.44□□□□□ -0.42
COL9A3-211ENST00000477612 TPRXLQ17RH7 258 aa12.43□□□□□ -0.42
COL9A3-211ENST00000477612 ANKRD39Q53RE8 183 aa12.43□□□□□ -0.42
COL9A3-211ENST00000477612 SSBP3-AS1Q7Z2R9 100 aa12.43□□□□□ -0.42
COL9A3-211ENST00000477612 LINC00518Q8N0U6 118 aa12.43□□□□□ -0.42
COL9A3-211ENST00000477612 SPANXDQ9BXN6 97 aa12.43□□□□□ -0.42
COL9A3-211ENST00000477612 HINT1P49773 126 aaPredicted RBP12.42□□□□□ -0.42
COL9A3-211ENST00000477612 SPINK1P00995 79 aa12.41□□□□□ -0.42
COL9A3-211ENST00000477612 IGLV7-46A0A075B6I9 117 aa12.4□□□□□ -0.42
COL9A3-211ENST00000477612 OR13C6PQ8NH95 151 aa12.4□□□□□ -0.42
COL9A3-211ENST00000477612 MUC2Q02817 5179 aa12.39□□□□□ -0.43
COL9A3-211ENST00000477612 SCGB1D4Q6XE38 83 aa12.38□□□□□ -0.43
COL9A3-211ENST00000477612 Q6ZVH6 145 aa12.38□□□□□ -0.43
COL9A3-211ENST00000477612 IFITM1P13164 125 aa12.37□□□□□ -0.43
COL9A3-211ENST00000477612 RPS29P62273 56 aaKnown RBP12.37□□□□□ -0.43
COL9A3-211ENST00000477612 SNRPEP62304 92 aaKnown RBP12.37□□□□□ -0.43
COL9A3-211ENST00000477612 MOBPQ13875 183 aa12.37□□□□□ -0.43
COL9A3-211ENST00000477612 FP248Q71RG6 208 aaPredicted RBP12.37□□□□□ -0.43
COL9A3-211ENST00000477612 ATOH7Q8N100 152 aa12.37□□□□□ -0.43
COL9A3-211ENST00000477612 IGLV9-49A0A0B4J1Y8 123 aa12.36□□□□□ -0.43
COL9A3-211ENST00000477612 HIST3H2BBQ8N257 126 aa12.36□□□□□ -0.43
COL9A3-211ENST00000477612 COPS9Q8WXC6 57 aa12.35□□□□□ -0.43
COL9A3-211ENST00000477612 MUC17Q685J3 4493 aa12.34□□□□□ -0.43
COL9A3-211ENST00000477612 SPRR1BP22528 89 aa12.34□□□□□ -0.43
COL9A3-211ENST00000477612 PCP2Q8IVA1 136 aa12.34□□□□□ -0.43
COL9A3-211ENST00000477612 ST20-AS1Q8NBB2 130 aa12.34□□□□□ -0.43
COL9A3-211ENST00000477612 DHRS4-AS1Q9P1J3 65 aa12.34□□□□□ -0.43
COL9A3-211ENST00000477612 ELOF1P60002 83 aaKnown RBP12.33□□□□□ -0.44
COL9A3-211ENST00000477612 HIST1H2BLQ99880 126 aa12.33□□□□□ -0.44
COL9A3-211ENST00000477612 CDIP1Q9H305 208 aa12.32□□□□□ -0.44
COL9A3-211ENST00000477612 C6orf99Q4VX62 202 aa12.31□□□□□ -0.44
COL9A3-211ENST00000477612 TRBV7-6A0A0J9YX20 115 aa12.3□□□□□ -0.44
COL9A3-211ENST00000477612 MUSTN1Q8IVN3 82 aa12.3□□□□□ -0.44
COL9A3-211ENST00000477612 COX7BP24311 80 aa12.29□□□□□ -0.44
COL9A3-211ENST00000477612 S100A2P29034 98 aa12.29□□□□□ -0.44
COL9A3-211ENST00000477612 Q8N377 158 aa12.28□□□□□ -0.44
COL9A3-211ENST00000477612 C9orf153Q5TBE3 101 aa12.26□□□□□ -0.45
COL9A3-211ENST00000477612 SLC25A34Q6PIV7 304 aa12.25□□□□□ -0.45
COL9A3-211ENST00000477612 KRTAP13-3Q3SY46 172 aa12.24□□□□□ -0.45
COL9A3-211ENST00000477612 A0A1B0GWB2 263 aa12.23□□□□□ -0.45
COL9A3-211ENST00000477612 A6NDN8 102 aa12.22□□□□□ -0.45
COL9A3-211ENST00000477612 SLC25A20O43772 301 aa12.22□□□□□ -0.45
COL9A3-211ENST00000477612 S100A6P06703 90 aa12.22□□□□□ -0.45
COL9A3-211ENST00000477612 TRAV13-2A0A0B4J235 113 aa12.21□□□□□ -0.45
COL9A3-211ENST00000477612 HSBP1L1C9JCN9 74 aa12.2□□□□□ -0.46
COL9A3-211ENST00000477612 LAMTOR3Q9UHA4 124 aa12.2□□□□□ -0.46
COL9A3-211ENST00000477612 A4D1N5 150 aa12.18□□□□□ -0.46
COL9A3-211ENST00000477612 A0A0U1RQV1 116 aa12.17□□□□□ -0.46
COL9A3-211ENST00000477612 TEX49A0A1B0GTD5 131 aa12.17□□□□□ -0.46
COL9A3-211ENST00000477612 TAL2Q16559 108 aa12.17□□□□□ -0.46
COL9A3-211ENST00000477612 IGLV5-48A0A075B6I7 105 aa12.15□□□□□ -0.46
COL9A3-211ENST00000477612 LINC01547P58512 204 aaPredicted RBP12.15□□□□□ -0.46
COL9A3-211ENST00000477612 SMIM11BQ8TCY0 68 aa12.15□□□□□ -0.46
COL9A3-211ENST00000477612 SMIM29Q86T20 159 aa12.14□□□□□ -0.47
COL9A3-211ENST00000477612 DEFB105AQ8NG35 78 aa12.12□□□□□ -0.47
COL9A3-211ENST00000477612 CD164Q04900 197 aa12.11□□□□□ -0.47
COL9A3-211ENST00000477612 FAT4Q6V0I7 4981 aa12.1□□□□□ -0.47
COL9A3-211ENST00000477612 Q1RN00 199 aa12.1□□□□□ -0.47
COL9A3-211ENST00000477612 LIMD2Q9BT23 127 aa12.1□□□□□ -0.47
COL9A3-211ENST00000477612 NHP2Q9NX24 153 aaKnown RBP12.1□□□□□ -0.47
COL9A3-211ENST00000477612 SCGB1D1O95968 90 aa12.09□□□□□ -0.47
COL9A3-211ENST00000477612 PRO1933Q9H354 126 aa12.09□□□□□ -0.47
COL9A3-211ENST00000477612 ASB16-AS1Q495Z4 193 aa12.08□□□□□ -0.48
COL9A3-211ENST00000477612 COX8AP10176 69 aa12.06□□□□□ -0.48
COL9A3-211ENST00000477612 DLEU1O43261 78 aa12.05□□□□□ -0.48
COL9A3-211ENST00000477612 VAMP3Q15836 100 aa12.05□□□□□ -0.48
COL9A3-211ENST00000477612 HRCT1Q6UXD1 115 aa12.05□□□□□ -0.48
COL9A3-211ENST00000477612 Q5XG85 94 aa12.04□□□□□ -0.48
COL9A3-211ENST00000477612 LINC00575Q6W349 94 aa12.03□□□□□ -0.48
COL9A3-211ENST00000477612 XP32Q5T750 250 aa12.02□□□□□ -0.49
COL9A3-211ENST00000477612 LCE2AQ5TA79 106 aaPredicted RBP12.01□□□□□ -0.49
COL9A3-211ENST00000477612 H7C2G1 150 aa12□□□□□ -0.49
COL9A3-211ENST00000477612 SEC61BP60468 96 aaKnown RBP12□□□□□ -0.49
COL9A3-211ENST00000477612 HIST1H4GQ99525 98 aa12□□□□□ -0.49
COL9A3-211ENST00000477612 hADV29S1A0JD25 119 aa11.96□□□□□ -0.49
COL9A3-211ENST00000477612 HIGD1BQ9P298 99 aa11.95□□□□□ -0.5
COL9A3-211ENST00000477612 Q6ZQY7 126 aa11.94□□□□□ -0.5
COL9A3-211ENST00000477612 A0A0G2JQZ4 141 aa11.93□□□□□ -0.5
COL9A3-211ENST00000477612 BVES-AS1Q5T3Y7 98 aa11.93□□□□□ -0.5
COL9A3-211ENST00000477612 C14orf144Q96I85 54 aa11.93□□□□□ -0.5
COL9A3-211ENST00000477612 C12orf57Q99622 126 aa11.93□□□□□ -0.5
COL9A3-211ENST00000477612 KRTAP4-1Q9BYQ7 146 aa11.93□□□□□ -0.5
COL9A3-211ENST00000477612 SPATA45Q537H7 98 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms